Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A8 F183 I0 R1 119 96.4 4778198 94.0% 4491506 99.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 3,277,706 (A)7→6 100% coding (370/465 nt) yhaV → toxin of the SohB(PrlF)‑YhaV toxin‑antitoxin system

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,277,7000A.93.8% 389.0 / 14.0 96coding (364/465 nt)yhaVtoxin of the SohB(PrlF)‑YhaV toxin‑antitoxin system
Reads supporting (aligned to +/- strand):  ref base A (1/3);  new base . (35/55);  total (37/59)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 112 total aligned reads displayed.

GTGCTGGTCGTTATCGTCTCTTCTTTCGTTATAGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGTAAAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACC  >  NC_000913/3277602‑3277795
                                                                                                  |                                                                                               
gTGCTTGTCGTTATCGTCACTTCTTGCGTTATAGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGTaa                                                                                                <  2:575341/100‑1 (MQ=255)
gTGCTGGTCGTTATCGTCTCTTCTTTCGTTATAGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGTaa                                                                                                >  1:1050801/1‑100 (MQ=255)
  gCTGGTCGTTATCGTCTCTTCTTTCGTTAGAGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGTaaaa                                                                                              <  1:795742/100‑1 (MQ=255)
    tGGTCGTTATCGTCTCTTCTTTCGTTATAGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGTaaaaaa                                                                                            >  1:2364428/1‑100 (MQ=255)
    tGGTCGTTATCGTCTCTTCTTTCGTTATAGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGTaaaaaa                                                                                            >  1:1160437/1‑100 (MQ=255)
    tGGTCGTTATCGTCTCTTCTTTCGTTATAGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGTaaaaaa                                                                                            >  2:878341/1‑100 (MQ=255)
     ggTCGTTATCGTCTCTTCTTTCGTTATAGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGTaaaaaac                                                                                           >  2:1205519/1‑99 (MQ=255)
     ggTCGTTATCGTCTCTTCTTTCGTTATAGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGTaaaaaac                                                                                           <  1:1234695/100‑2 (MQ=255)
     ggTCGTTATCGTCTCTTCTTTCGTTATAGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGTaaaaaac                                                                                           <  2:1704777/100‑2 (MQ=255)
     ggTCGTTATCGTCTCTTCTTTCGTTATAGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGTaaaaaac                                                                                           <  1:1925979/100‑2 (MQ=255)
      gtggTTATCGTCGCTGCTTTTGTGATATTGAAAAAGAGAAAGTGTTCATTCTTTGATGGATGAACGATGAAAGCAGTTTGCGTATTTATGTTaaaaaa                                                                                            <  2:1893254/95‑1 (MQ=255)
      gTCGTTATCGTCTCTTCTTTCGTTATAGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGTaaaaaac                                                                                           <  1:801750/99‑2 (MQ=255)
      gTCGTTATCGGCTCTTCTTTCGTTATAGCGAAATAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGTaaaaaa                                                                                            <  2:1171278/98‑1 (MQ=255)
       tCGTTATCGTCTCTTCTTTCGTTATAGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGTaaaaaacag                                                                                         <  2:1509217/100‑4 (MQ=255)
          ttATCGTCTCTTCTTTCGTTATAGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATg                                                                                     >  2:224606/1‑100 (MQ=255)
           tATCGTCTCTTCTTTCGTTATAGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGc                                                                                    <  1:600527/100‑1 (MQ=255)
            aTCGTCTCTTCTTTCGTTATAGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGTGCACCTACGGT‑AAAAAACAGATGcc                                                                                   >  2:893316/1‑100 (MQ=255)
            aTCGTCTCTTCTTTCGTTATAGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGcn                                                                                   <  1:2186875/100‑2 (MQ=255)
            aTCGTCTCTTCTTTCGTTATAGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGcc                                                                                   <  1:1461664/100‑1 (MQ=255)
             tCGTCTCTTCTTTCGTTATAGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCt                                                                                  <  1:701104/100‑1 (MQ=255)
               gTCTCTTCTTTCGTTATAGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCtat                                                                                <  2:1664186/100‑1 (MQ=255)
               gTCTCTTCTTTCGTTATAGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCtat                                                                                >  1:48681/1‑100 (MQ=255)
                tctcTTCTTTCGTTATAGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCtata                                                                               <  1:957061/100‑1 (MQ=255)
                 ctctTCTTTCGTTATAGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATAc                                                                              <  2:1227306/100‑1 (MQ=255)
                 ctctTCTTTCGTTATAGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATAc                                                                              >  1:2275383/1‑100 (MQ=255)
                  tcttctTTCGTTATAGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATAcc                                                                             >  2:898180/1‑100 (MQ=255)
                  tcttctTTCGTTATAGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATAcc                                                                             <  2:1160431/100‑1 (MQ=255)
                  tcttctTTCGTTATAGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATAcc                                                                             <  2:2364407/100‑1 (MQ=255)
                    ttcttTCGTTATAGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGt                                                                           <  1:1529748/100‑1 (MQ=255)
                     tcttTCGTTATAGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCtan                                                                                <  2:964161/94‑2 (MQ=255)
                     tcttTCGTTATAGTGAAAAAGAGAAAGTCATCATTCTCGGATGGATGAACGATGAAAACACTCTGCGCACCTACGG‑GAAAAAACAGATGCCTATACCGTa                                                                          >  2:1901519/1‑100 (MQ=255)
                      cttTCGTTATAGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTAt                                                                         >  1:1084510/1‑100 (MQ=255)
                         tCGTTAGAGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGAAAATAAAG‑AAAAAAACAGATGCCTATACCGTATTCa                                                                      <  2:19682/100‑1 (MQ=255)
                          cGTTATAGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAg                                                                     >  1:1865144/1‑100 (MQ=255)
                           gTTATAGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAg                                                                     <  2:1840113/99‑1 (MQ=255)
                              ataGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCaaa                                                                 >  2:2363874/1‑100 (MQ=255)
                              aaagaaaaaaaGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGAAAAAAAAGT‑AAAAAACAGATGCCTATACCGTATTCa                                                                      <  2:194052/89‑1 (MQ=255)
                                aGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAAt                                                               >  1:1537351/1‑100 (MQ=255)
                                aGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCACCaaaa                                                                >  2:1012301/1‑99 (MQ=255)
                                 gTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAAGACTCTGCGCACCTACGGT‑AAAACACAGATGCCTATACCGTATTCAGCAAAATg                                                              >  2:111081/1‑100 (MQ=255)
                                 gTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATg                                                              >  2:393950/1‑100 (MQ=255)
                                 gTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATg                                                              <  1:1079511/100‑1 (MQ=255)
                                  tGAAAAAGAGAAAGTCATCATACTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAAt                                                               >  2:2316168/1‑98 (MQ=255)
                                    aaaaaGAGAAATTCATCATTCTGGGATGGATGAACGATGAAAACACTCTTCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTa                                                           <  1:1389029/100‑1 (MQ=255)
                                        agagAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTaaaaa                                                       >  1:1143445/1‑100 (MQ=255)
                                        agagAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTaaaaa                                                       >  1:893867/1‑100 (MQ=255)
                                          agaAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAaga                                                     <  2:160756/100‑1 (MQ=255)
                                           gaAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAagag                                                    <  1:1462523/100‑1 (MQ=255)
                                           gaAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAagag                                                    >  1:1499618/1‑100 (MQ=255)
                                            aaaGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAgg                                                   <  1:995536/100‑1 (MQ=255)
                                            aaaGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAgg                                                   <  1:2141546/100‑1 (MQ=255)
                                            aaaGTCATCATTCTGAGAAGGATGAACAATGAAAACACTCTGCG‑AAAAAAAAAAAAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAgg                                                   <  2:1899507/100‑1 (MQ=255)
                                            aaaGTAATCATTCTGAGATGAATGAACTATGAAAACACTCTGCGCA‑ATAAAGTTAAAAAACAGATGCCTATCCCCGATTCAGCAAAATGTTAAAAagag                                                    <  2:1745787/99‑1 (MQ=255)
                                             aaGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGa                                                  <  1:1623819/100‑1 (MQ=255)
                                             aaGTCAACATTGTTGGAGGGAGGAACGTTGAAGCCACTGTGCTAACCAACGGT‑AAAAAACAGATGCCTATACCTTATTCAGCAAAGTGTTAAAAAGAGGa                                                  <  2:1400946/100‑1 (MQ=255)
                                             aaGTAATCATTCTGGGATGGATGAACAATGAAAACACTCTGAGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGa                                                  <  2:1622845/100‑1 (MQ=255)
                                                 catcatTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGTAAAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGACAt                                               >  2:1454454/1‑100 (MQ=255)
                                                 catcatTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGACAtc                                              <  2:1143440/100‑1 (MQ=255)
                                                  atcatTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGACAtcc                                             <  1:2076093/100‑1 (MQ=255)
                                                    catTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGACAtcctc                                           >  2:1716211/1‑100 (MQ=255)
                                                    catTCTGAAATGAATGAACGATGAAAACACTCTGCGAAAAAA‑AAAAAAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGACAt                                               <  2:1397871/96‑1 (MQ=255)
                                                       tCTGGGATGGATGAACGAAGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCGAGACCGTATTCAGCAAAATGTTAAAATGAGGACAtcctcc                                          <  2:1470400/98‑1 (MQ=255)
                                                        cTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAACATGTTAAAAAGAGGACATCCTCCTGc                                       >  2:1292223/1‑100 (MQ=255)
                                                            gatggatgAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGAc                                   <  1:847090/100‑1 (MQ=255)
                                                              tggatgAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTg                                 <  2:1891567/100‑1 (MQ=255)
                                                               ggatgAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTgg                                <  2:1643145/100‑1 (MQ=255)
                                                               ggatgAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTg                                 <  1:2259397/99‑1 (MQ=255)
                                                                gatgAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTggg                               <  1:1948300/100‑1 (MQ=255)
                                                                   gAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTGGGaaa                            >  1:919086/1‑100 (MQ=255)
                                                                   gAACGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTGGGaaa                            <  2:1148538/100‑1 (MQ=255)
                                                                    aaCGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTGGGAAAc                           >  1:1287064/1‑100 (MQ=255)
                                                                     aCGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTGGGAAAcc                          >  1:2083630/1‑100 (MQ=255)
                                                                     aCGATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTGGGAAAcc                          <  1:1943629/100‑1 (MQ=255)
                                                                       gATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTGGGAAACCCt                        <  1:744043/100‑1 (MQ=255)
                                                                       gATGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTGGGAAACCCt                        <  1:1815077/100‑1 (MQ=255)
                                                                         tGAAAACACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACCGGGAAACCCTCa                      >  1:1622934/1‑100 (MQ=255)
                                                                           aaaaCACTCTGCGCACTTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTGGGAAACCCTCAcc                    >  2:1820535/1‑100 (MQ=255)
                                                                           aaaaCACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTGGGAAACCCTCAcc                    <  1:572746/100‑1 (MQ=255)
                                                                           aaaaCACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTGGGAAACCCTCAcc                    >  2:1004217/1‑100 (MQ=255)
                                                                            aaaCACTCTGCGCACCTACGGT‑AAAAAACAGATGCCTACACCGTATTAAGAAAAAAGTCAAAAAGAGGACATCCTCCTGCCGACTGGGAAACCCTCAccc                   <  2:1298210/100‑1 (MQ=255)
                                                                              acacTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTGGGAAACCCTCACCCga                 <  1:568347/100‑1 (MQ=255)
                                                                              acacTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTGGGAAACCCTCACCCga                 >  1:465186/1‑100 (MQ=255)
                                                                                acTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGACATCTTCCTGCCGACTGGGAAACCCTCACCCgaga               >  1:2184785/1‑100 (MQ=255)
                                                                                acTCTGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTGGGAAACCCTCACCCgaga               <  2:683527/100‑1 (MQ=255)
                                                                                 ctctGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTGGGAAACGCTCACCCGAGaa              <  1:1564643/100‑1 (MQ=255)
                                                                                 ctctGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTGGGAAACCCTCACCCgag                <  2:2306275/98‑1 (MQ=255)
                                                                                 ctctGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTGGGAAACCCTCACCCGAGaa              <  2:87114/100‑1 (MQ=255)
                                                                                 ctctGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTGGGAAACCCTCACCCGAGaa              <  2:1199886/100‑1 (MQ=255)
                                                                                   ctGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTGGGAAACCCTCACCCGAGAAAc            >  1:1140689/1‑100 (MQ=255)
                                                                                    tGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTGGGAAACCCTCACCCGAGAAACa           <  2:494943/100‑1 (MQ=255)
                                                                                    tGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTGGGAAACCCTCACCCGAGAAACa           <  2:639534/100‑1 (MQ=255)
                                                                                    tGCGCACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTGGGAAACCCTCACCCGAGAAACa           >  2:1559583/1‑100 (MQ=255)
                                                                                     gcgcACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTGGGAAACCCTCACCCGAGAAACag          <  1:2080783/100‑1 (MQ=255)
                                                                                      cgcACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTGGGAAACCCTCACCCGAGAAACaga         >  2:2061359/1‑100 (MQ=255)
                                                                                       gcACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTGGGAAACCCTCACCCGAGAAACaga         <  2:1050797/99‑1 (MQ=255)
                                                                                        cACCTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTGGGAAACCCTCACCCGAGAAACagaag       <  1:831018/100‑1 (MQ=255)
                                                                                          ccTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTGGGAAACCCTCACCCGAGAAACAgaagaa     <  1:524368/100‑1 (MQ=255)
                                                                                           cTACGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGaaa    <  2:1506011/100‑1 (MQ=255)
                                                                                             aCGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAAcc  <  1:2303475/100‑1 (MQ=255)
                                                                                             aCGGT‑AAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAAc   <  2:856701/99‑1 (MQ=255)
                                                                                                  |                                                                                               
GTGCTGGTCGTTATCGTCTCTTCTTTCGTTATAGTGAAAAAGAGAAAGTCATCATTCTGGGATGGATGAACGATGAAAACACTCTGCGCACCTACGGTAAAAAAACAGATGCCTATACCGTATTCAGCAAAATGTTAAAAAGAGGACATCCTCCTGCCGACTGGGAAACCCTCACCCGAGAAACAGAAGAAACC  >  NC_000913/3277602‑3277795

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A