Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A10 F169 I0 R1 76 156.9 7610945 95.9% 7298896 99.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 4,060,280 (T)9→8 100% intergenic (+50/‑167) typA → / → yihL GTP‑binding protein/putative DNA‑binding transcriptional regulator

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,060,2720T.98.2% 499.5 / 0.9 113intergenic (+42/‑175)typA/yihLGTP‑binding protein/putative DNA‑binding transcriptional regulator
Reads supporting (aligned to +/- strand):  ref base T (1/1);  new base . (53/58);  total (54/59)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 148 total aligned reads displayed.

ACGTCACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGCAGGTTTTTTTTTGCCTGTCGTGAGCGCACACCAATGCGAGTATCTCCCTTATAAGTCTGTGGTTACGTCAATAGAGAGCTTTGTCACAATTATCTGCA  >  NC_000913/4060173‑4060366
                                                                                                   |                                                                                              
aCGTCACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCATCGCTGGCAGGt                                                                                                <  2:2480159/100‑1 (MQ=255)
 cGTCACCTAACGAAAAACGATCGTCACCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGCAGGt                                                                                                <  1:3470902/99‑1 (MQ=255)
   tCACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGCAGGtttt                                                                                             >  2:1659146/1‑100 (MQ=255)
   tCACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGCAGGtttt                                                                                             <  2:3537028/100‑1 (MQ=255)
    cACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGCAGGttttt                                                                                            >  2:116685/1‑100 (MQ=255)
     aCCTGACGGAAAACGATCGTCTCCGCTCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAATACCTGCCATCGCTGGCAGGtttttt                                                                                           <  1:2549523/100‑1 (MQ=38)
     aCCTGACGGAAAACGATCGTCGCCGCGTCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGCAGGttttt                                                                                            <  1:724173/99‑1 (MQ=255)
     aCCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGCAGGtttttt                                                                                           >  2:3050261/1‑100 (MQ=255)
      ccTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGGTTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGCAGGttttttt                                                                                          >  1:2979854/1‑100 (MQ=255)
      ccTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCATCGCTGGCAGGtttttta                                                                                          <  2:2588871/100‑2 (MQ=255)
      ccTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGACAGGttttttt                                                                                          <  2:2899303/100‑1 (MQ=255)
       cTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTCATTTCGTTTTTTAGTCATAAAAAACCTGCCATCGCTGGCAGGtttttt                                                                                           <  2:3451994/98‑1 (MQ=255)
       cTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCATCGCTGGCAGGttttttat                                                                                         <  1:2521170/100‑3 (MQ=255)
       cTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGCAGGtttttttt                                                                                         >  1:224608/1‑100 (MQ=255)
       cTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCAACGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGCAGGtttttttt                                                                                         <  1:1416686/100‑1 (MQ=255)
          aCGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGCAGGttttttttgcc                                                                                      <  1:1429259/100‑4 (MQ=255)
          aCGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGCAGGttttttttgcc                                                                                      <  2:2026149/100‑4 (MQ=255)
          aCGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGCAGGttttttttgcc                                                                                      <  1:1240980/100‑4 (MQ=255)
          aCGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGCAGGttttttttgc                                                                                       <  1:2386199/99‑3 (MQ=255)
           cGGAAAACGATCGTCGTCGCGCAAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTTATAAAAAACCTGCCAGCGATGGCAGGtgttttttgact                                                                                     >  1:439016/1‑96 (MQ=255)
            ggAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGCAGG‑TTTTTTTTGCCTg                                                                                   >  2:3142401/1‑100 (MQ=255)
            ggAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGCAGG‑TTTTTTTTGCCTg                                                                                   >  2:3461212/1‑100 (MQ=255)
               aaaCGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGCAGG‑TTTTTTTTGCCTGTCg                                                                                <  2:898084/100‑1 (MQ=255)
               aaaCGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGCAGG‑TTTTTTTTGCCTGTCg                                                                                >  2:210472/1‑100 (MQ=255)
                aaCGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGCAGG‑TTTTTTTTGCCTGTCGt                                                                               <  1:1058065/100‑1 (MQ=255)
                aaCGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGCAGG‑TTTTTTTTGCCTGTCGt                                                                               <  2:1644660/100‑1 (MQ=255)
                 aCGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGCAGG‑TTTTTTTTGCCTGTCGTg                                                                              <  1:1536218/100‑1 (MQ=255)
                  cGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGCAGG‑TTTTTTTTGCCTGTCGTGa                                                                             >  1:545495/1‑100 (MQ=255)
                  cGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGCAGG‑TTTTTTTTGCCTGTCGTGa                                                                             <  1:369105/100‑1 (MQ=255)
                   gATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGCAGG‑TTTTTTTTGCCTGTCGTGAg                                                                            <  1:199786/100‑1 (MQ=255)
                    aTCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGCAGG‑TTTTTTTTGCCTGTCGTGAgc                                                                           >  2:1869957/1‑100 (MQ=255)
                      cgtcgCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTATTCATAAGAAACCTACCAGCGGTGGCACGttttttttgacggtc                                                                                  >  1:3755111/1‑85 (MQ=255)
                      cgtcgCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGCAGG‑TTTTTTTTGCCTGTCGTGAgcgc                                                                         <  2:864152/100‑1 (MQ=255)
                      cgtcgCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGCAGG‑TTTTTTTTGCCTGTCGTGAgcgc                                                                         <  1:108956/100‑1 (MQ=255)
                       gtcgCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGCAGG‑TTTTTTTTGCCTGTCGTGAGCGca                                                                        <  1:3490806/100‑1 (MQ=255)
                          gccgcGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGCAGG‑TTTTTTTTGCCTGTCGTGAGCGcaca                                                                      <  1:2357205/99‑1 (MQ=255)
                          gccgcGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGCAGG‑TTTTTTTTGCCTGTCGTGAGCGCacac                                                                     >  2:3643353/1‑100 (MQ=255)
                          gccgcGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGCAGG‑TTTTTTTTGCCTGCCGTGAGCGcactc                                                                     <  2:2581579/100‑3 (MQ=255)
                           ccgcGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGCAGG‑TTTTTTTTGCCTGTCGTGAGCGCACAcc                                                                    <  1:638162/100‑1 (MQ=255)
                            cgcaCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGCAGG‑TTTTTTTTGCTTGTCGTTAGCACACACCa                                                                   >  1:1719392/1‑100 (MQ=255)
                                 cAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGCAGG‑TTTTTTTTGCCTGTCGTGAGCGCACACCAATGCg                                                              <  1:3669540/100‑1 (MQ=255)
                                  aaCCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGCAGG‑TTTTTTTTGCCTGTCGTGAGCGCACACCAATGCGa                                                             <  2:1947075/100‑1 (MQ=255)
                                   aCCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGCAGG‑TTTTTTTTGCCTGTCGTGAGCGCACACCAATGCGAg                                                            <  2:1991114/100‑1 (MQ=255)
                                   aCCGCGCACCGAAAGACGATTAATTTCGGTTTTTAGTCATAAAAAACCTGCCACCGCTGGCAGGTTTTTTTTT‑CCTGTCGTGAGCGCACACCAATGCGa                                                             >  1:3153330/1‑99 (MQ=38)
                                     cgcgCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGCAGG‑TTTTTTTTGCCTGTCGTGAGCGCACACCAATGCGAGTa                                                          >  2:705625/1‑100 (MQ=255)
                                          aCCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGCAGG‑TTTTTTTTGCCTGTCGTGAGCGCACACCAATGCGAGTATCTcc                                                     <  2:1477698/100‑1 (MQ=255)
                                           ccGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGCAGG‑TTTTTTTTGCCTGTCGTGAGCGCACACCAATGCGAGTATCTccc                                                    >  2:534298/1‑100 (MQ=255)
                                           ccGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGCAGG‑TTTTTTTTGCCTGTCGTGAGCGCACACCAATGCGAGTATCTccc                                                    <  2:2929053/100‑1 (MQ=255)
                                            cGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGCAGG‑TTTTTTTTGCCTGTCGTGAGCGCACACCAATGCGAGTATCTCCCt                                                   <  2:3649360/100‑1 (MQ=255)
                                             gAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGCAGG‑TTTTTTTTGCCTGTCGTGAGCGCACACCAATGCGAGTATCTCCCtt                                                  <  2:1907225/100‑1 (MQ=255)
                                             gAAAGACGATCAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGCAGG‑TTTTTTTTGCCTTTCCTGAGCGCACACCAATGCGAGTATCTCCCtt                                                  <  1:2492779/100‑1 (MQ=255)
                                               aaGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGCAGG‑TTTTTTTTGCCTGTCGTGAGCGCACACCAATGCGAGTATCTCCCTtat                                                >  2:1793207/1‑100 (MQ=255)
                                                aGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGCAGG‑TTTTTTTTGCCTGTCGTGAGCGCACACCAATGCGAGTATCTCCCTtata                                               <  2:3023678/100‑1 (MQ=255)
                                                   cGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGCAGG‑TTTTTTTTGCCTGTCGTGAGCGCACACCAATGCGAGTATCTCCCTTATAAGt                                            >  1:963189/1‑100 (MQ=255)
                                                   cGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGCAGG‑TTTTTTTTGCCTGTCGTAAGCGAACACCAATGCGAGTATCTCCCTTATaa                                              >  1:3207587/1‑98 (MQ=255)
                                                     aTTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGGAGG‑TTTTTTTTGCCTGTCGTGAGCGCACACCAATGCGAGTATCTCCCTTATAAGTCt                                          <  1:2664998/100‑1 (MQ=255)
                                                     aTTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGCAGG‑TTTTTTTTGCCTGTCGTGAGCGCACACCAATGCGCGTATCTCCCTTATAAGTCt                                          >  1:2414456/1‑100 (MQ=255)
                                                     aTTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGCAGG‑TTTTTTTTGCCTGTCGTGAGCGCACACCAATGCGAGTATCTCCCTTATAAGTCt                                          >  1:1222166/1‑100 (MQ=255)
                                                       tAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGCAGG‑TTTTTTTTGCCTGTCGTGAGCGCACACCAATGCGAGTATCTCCCTTATAAGTCtgt                                        <  1:693390/100‑1 (MQ=255)
                                                        aaTTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGCAGG‑TTTTTTTTGCCTGTCGTGAGCGCACACCAATGCGAGTATCTCCCTTATAAGTCtgtg                                       <  1:3326804/100‑1 (MQ=255)
                                                         aTTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGCAGG‑TTTTTTTTGCCTGTCGTGAGCGCACACCAATGCGAGTATCTCCCTTATAAGTCTGTgg                                      <  2:3060462/100‑1 (MQ=255)
                                                          tggcGTTTGTAAGTAATAAACGACCGGCGAGCGATGGCAGG‑GTTTTTTTGCCTGTCGTGAGCGCACCCCAATGCGCGTATCTCCCTTATAAGTCTGTgg                                      <  1:3276358/96‑1 (MQ=255)
                                                           ttCATTTTTTAGTCATAAAAACCCTGCCAGCGATCCCAGG‑TTTTTTTTGCCTGTCGTGAGCGCACACCAATGCGAGTATCTCCCTTATATGTCTGTgg                                      <  1:839190/98‑1 (MQ=255)
                                                               ttttttAGTCATAAAAAACCTGCCAGCGATGGCAGG‑TTTTTTTTGCCTGTCGTGAGCGCACACCAATGCGAGTATCTCCCTTATAAGTCTGTGGTTACGt                                >  1:977352/1‑100 (MQ=255)
                                                                tttttAGTCATAAAAAACCTGCCAGCGATGGCAGG‑TTTTTTTTGCCTGTCGTGAGCGCACACCAATGCGAGTATCTCCCTTATAAGTCTGTGGTTACGTc                               <  2:374791/100‑1 (MQ=255)
                                                                     aGTCATAAAAAACCTGCCAGCGATGGCAGG‑TTTTTTTTGCCTGTCGTGAGCGCACACCAATGCGAGTATCTCCCTTATAAGTCTGTGGTTACGTCAATag                          >  1:3676477/1‑100 (MQ=255)
                                                                      gTCATAAAAAACCTGCCAGCGATGGCAGG‑TTTTTTTTGCCTGTCGTGAGCGCACACCAATGCGAGTATCTCCCTTATAAGTCTGTGGTTACGTCAATaga                         <  2:2470049/100‑1 (MQ=255)
                                                                      gTCATAAAAAACCTGCCAGCGATGGCAGG‑TTTTTTTTGCCTGTCGTGAGCGCACACCAATGCGAGTATCTCCCTTATAAGTCTGTGGTTACGTCAATaga                         >  2:3314854/1‑100 (MQ=255)
                                                                       tCATAAAAAACCTGCCAGCGATGGCAGG‑TTTTTTTTGCCTGTCGTGAGCGCACACCAATGCGAGTATCTCCCTTATAAGTCTGTGGTTACGTCAATagag                        <  1:2286135/100‑1 (MQ=255)
                                                                       tCATAAAAAACCTGCCAGCGATGGCAGG‑TTTTTTTTGCCTGTCGTGAGCGCACACCAATGCGAGTATCTCCCTTATAAGTCTGTGGTTACGTCAATa                           <  2:2420544/97‑1 (MQ=255)
                                                                       gcaaaaaaaaCCTGCCATCGCTGGCAGG‑TTTTTTTTGCCTGTCGTGAGCGCACACCAATGCGAGTATCTCCCTTATAAGTCTGTGGTTACGTCAATagag                        >  2:2911174/5‑100 (MQ=38)
                                                                        caaaaaaaaCCTGCCATCGCTGGCAGG‑TTTTTTTTGCCTGTCGTGAGCGCACACCAATGCGAGTATCTCCCTTATAAGTCTGTGGTTACGTCAATagaga                       >  2:376436/4‑100 (MQ=38)
                                                                        caaaaaaaaCCTGCCATCGCTGGCAGG‑TTTTTTTTGCCTGTCGTGAGCGCACACCAATGCGAGTATCTCCCTTATAAGTCTGTGGTTACGTCAATagaga                       >  2:449020/4‑100 (MQ=38)
                                                                        cATAAAAAACCTGCCAGCGATGGCAGG‑TTTTTTTTGCCTGTCGTGAGCGCACACCAATGCGAGTATCTCCATTATAAGTCTGCGGTTACGTCAATagaga                       >  1:929086/1‑100 (MQ=255)
                                                                         aaaaaaaaCCTGCCATCGCTGGCAGG‑TTTTTTTTGCCTGTCGTGAGCGCACACCAATGCGAGTATCTCCCTTATAAGTCTGTGGTTACGTCAATagagag                      >  2:2487392/3‑100 (MQ=38)
                                                                         aTAAAAAACCTGCCAGCGATGGCAGG‑TTTTTTTTGCCTGTCGTGAGCGCACACCAATGCGAGTATCTCCCTTATAAGTCTGTGGTTACGTCAATagagag                      >  1:2564543/1‑100 (MQ=255)
                                                                         aTAAAAAACCTGCCAGCGATGGCAGG‑TTTTTTTTGCCTGTCGTGAGCGCACACCAATGCGAGTATCTCCCTTATAAGTCTGTGGTTACGTCAATagagag                      >  1:2960986/1‑100 (MQ=255)
                                                                         aTAAAAAACCTGCCAGCGATGGCAGG‑TTTTTTTTGCCTGTCGTGAGCGCACACCAATGCGAGTATCTCCCTTATAAGTCTGTGGTTACGTCAATagagag                      <  1:1926350/100‑1 (MQ=255)
                                                                         aTAAAAAACCTGCCAGCGATGGCA‑GTTTTTTTTTGCCTGTCGTGAGCGCACACCAATGCGAGTATCTCCCTTATAAGTCTGTGGTTACGTCAATagaga                       <  1:893920/99‑1 (MQ=255)
                                                                          tAAAAAACCTGCCAGCGATGGCAGG‑TTTTTTTTGCCTGTCGTGAGCGCACACCAATGCGAGTATCTCCCTTATAAGTCTGTGGTTACGTCAATAGAGAGc                     >  2:3350259/1‑100 (MQ=255)
                                                                          aaaaaaaCCTGCCATCGCTGGCAGG‑TTTTTTTTGCCTGTCGTGAGCGCACACCAATGCGAGTATCTCCCTTATAAGTCTGTGGTTACGTCAATAGAGAGc                     >  1:2031204/2‑100 (MQ=38)
                                                                          aaaaaaaCCTGCCATCGCGGGCAGG‑TTTTTTTTGCCTGTCGTGAGCGCACACCAATGCGAGTATCTCCCTTATGAGTCTGTGGTTACGTCAATAGAGAGc                     >  2:1384051/2‑100 (MQ=38)
                                                                            aaaaaCCTGCCAGCGATGGCAGG‑TTTTTTTTGCCTGTCGTGAGCGCACACCAATGCGAGTATCTCCCTTATAAGTCTGTGGTTACGTCAATAGAGAGc                     >  1:600818/1‑98 (MQ=255)
                                                                             aaaaCCTGCCAGCGATGGCAGG‑TTTTTTTTGCCTGTCGTGAGCGCACACCAATGCGAGTATCTCCCGTATAAGTCTGTGGTTACGTCAATAGAGAGCt                    >  2:1324735/1‑98 (MQ=255)
                                                                              aaaCCTGCCATCGCTGGCAGG‑TTTTTTTTGTCTGTCGTGAGCGCACACCAATGCGAGTATGTCTCTTTTAAGTCTGTGGTTACGTCAATAGAGAGCTTTg                 >  1:2063805/1‑100 (MQ=37)
                                                                              aaaCCTGCCATCGCTGGCAGG‑TTTTTTTTGCCTGTCGTGAGCGCACACCAATGCGAGTATCTCCCTTATAAGTCTGTGGTTACGTCAATAGAGAGCTTTg                 >  2:1701890/1‑100 (MQ=39)
                                                                                aCCTGCCATCGCTGGCAGG‑TTTTTTTTGCCTGTCGTGAGCGCACACCAATGCGAGTATCTCCCTTATAAGTCTGTGGTTACGTCAATAGAGAGCTTTGTc               >  2:1437924/1‑100 (MQ=255)
                                                                                aCCTGCCAGCGATGGCAGG‑TTTTTTTTGCCTGTCGTGAGCGCACACCAATGCGAGTATCTCCCTTATAAGTCTGTGGTTACGTCAATAGAGAGCTTTGTc               <  2:107449/100‑1 (MQ=255)
                                                                                aCCTGCCAGCGATGGCAGG‑TTTTTTTTGCCTGTCGTGAGCGCACACCAATGCGAGTATCTCCCTTATAAGTCTGTGGTTACGTCAATAGAGAGCTTTGTc               <  1:483109/100‑1 (MQ=255)
                                                                                aCCTGCCAGCGATGGCAGG‑TTTTTTTTGCCTGTCGTGAGCGCACACCAATGCGAGTATCTCCCTTATAAGTCTGTGGTTACGTCAATAGAGAGCTTTGTc               <  2:2961005/100‑1 (MQ=255)
                                                                                    gCCAGCGATGGCAGG‑TTTTTTTTGCCTGTCGTGAGCGCACACCAATGCGAGTATCTCCCTTATAAGTCTGTGGTTACGTCAATAGAGAGCTTTGTcaca            >  2:3222063/1‑99 (MQ=255)
                                                                                    gCCAGCGATGGCAGG‑TTTTTTTTGCCTGTCGTGAGCGCACACCAATGCGAGTATCTCCCTTATAAGTCTGTGGTTACGTCAATAGAGAGCTTTGTCACaa           >  2:3612806/1‑100 (MQ=255)
                                                                                     ccAGCGATGGCAGG‑TTTTTTTTGCCTGTCGTGAGCGCACACCAATGCGAGTATCTCCCTTATAAGTCTGTGGTTACGTCAATAGAGAGCTTTGTCACAAt          <  2:1730968/100‑1 (MQ=255)
                                                                                        gCGATGGCAGG‑TTTTTTTTGCCTGTCGTGAGCGCACACCAATGCGAGTATCTCCCTTATAAGTCTGTGGTTACGTCAATAGAGAGCTTTGTCACAATTAt       <  1:2258287/100‑1 (MQ=255)
                                                                                         cGATGGCAGG‑TTTTTTTTGCCTGTCGTGAGCGCACACCAATGCGAGTATCTCCCTTATAAGTCTGTGGTTACGTCAATAGAGAGCTTTGTCACAATTATc      <  1:2825446/100‑1 (MQ=255)
                                                                                           aTGGCAGG‑TTTTTTTTGCCTGTCGTGAGCGCACACCAATGCGAGTATCTCCCTTATAAGTCTGTGGTTACGTCAATAGAGAGCTTTGTCACAATTATCTg    <  1:1736344/100‑1 (MQ=255)
                                                                                           aTGGCAGG‑TTTTTTTTGCCTGTCGTGAGCGCACACCAATGCGAGTATCTCCCTTATAAGTCTGTGGTTACGTCAATAGAGAGCTTTGTCACAATTATCTg    <  2:600752/100‑1 (MQ=255)
                                                                                            tGGCAGG‑TTTTTTTTGCCTGTCGTGAGCGCACACCAATGCGAGTATCTCCCTTATAAGTCTGTGGTTACGTCAATAGAGAGCTTTGTCACAATTATCTGc   <  2:1773347/100‑1 (MQ=255)
                                                                                            tGGCAGG‑TTTGTTTTGCCTGTCGTGATCTCACACCAATTCTTGTATCTCCCTTATAAGTCTTTTGTGACGTCAATAGAGAGCTTTGTCACAATTATCTg    <  1:2673807/99‑1 (MQ=255)
                                                                                             ggCAGG‑TTTTTTTTGCCTGTCGTGAGCGCACACCAATGCGAGTATCTCCCTTATAAGTCTGTGGTTACGTCAATAGAGAGCTTTGTCACAATTATCTGCa  >  2:1205556/1‑100 (MQ=255)
                                                                                                   |                                                                                              
ACGTCACCTGACGGAAAACGATCGTCGCCGCGCCAACCGCGCACCGAAAGACGATTAATTTCGTTTTTTAGTCATAAAAAACCTGCCAGCGATGGCAGGTTTTTTTTTGCCTGTCGTGAGCGCACACCAATGCGAGTATCTCCCTTATAAGTCTGTGGTTACGTCAATAGAGAGCTTTGTCACAATTATCTGCA  >  NC_000913/4060173‑4060366

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A