Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A11 F256 I1 R1
|
186 |
136.5 |
6958264 |
92.1% |
6408561 |
99.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,350,648 |
T→A |
intergenic (‑189/+41) |
elbB ← / ← arcB |
isoprenoid biosynthesis protein with amidotransferase‑like domain/aerobic respiration control sensor histidine protein kinase, cognate to two‑component response regulators ArcA and RssB |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,350,648 | 0 | T | A | 97.9%
| 465.8
/ ‑0.6
| 142 | intergenic (‑189/+41) | elbB/arcB | isoprenoid biosynthesis protein with amidotransferase‑like domain/aerobic respiration control sensor histidine protein kinase, cognate to two‑component response regulators ArcA and RssB |
| Reads supporting (aligned to +/- strand): ref base T (0/3); new base A (68/69); total (68/74) |
| Fisher's exact test for biased strand distribution p-value = 2.45e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.63e-01 |
Only 100 of 142 total aligned reads displayed.
CATTTAAGTTTTGCTATCTTAACTGCGTGCGGCCTGAAAAACAGTGCTGTGCCCTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCTGGTGT‑TGGCGCAGTATTCGCGCACCCCGGTCTAG‑CCGGGGTCATTTTTTAGTGGCTTTTGCCACCCACGCTTTCAGCACTTCTACGTCGTGACGCC > NC_000913/3350551‑3350744
|
cATTTAAGTTTTGCTATCTTAACTGCGTGCGGCCTGAAAAACAGTGCTGTGCCCTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCAgg < 2:1318881/100‑1 (MQ=255)
aTTTAAGTTTTGCTATCTTAACTGCGTGCGGCCTGAAAAACAGTGCTGTGCCCTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCAGgt > 2:1711533/1‑100 (MQ=255)
tttAAGTTTTGCTATCTTAACTGCGTGCGGCCTGAAAAACAGTGCTGTGCCCTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCAGgtg < 2:423218/100‑1 (MQ=255)
ttAAGTTTTGCTATCTTAACTGCGTGCGGCCTGAAAAACAGTGCTGTGCCCTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCAGgtgt > 1:292042/1‑100 (MQ=255)
tAAGTTTTGCTATCTTAACTGCGTGCGGCCTGAAAAACAGTGCTGTGCCCTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCAGGTGt‑t < 1:1235090/100‑1 (MQ=255)
aGTTTTGCTATCTTAACTGCGTGCGGCCTGAAAAACAGTGCTGTGCCCTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCAGGTGT‑Tgg < 1:1032854/100‑1 (MQ=255)
aGTTTTGCTATCTTAACTGCGTGCGGCCTGAAAAACAGTGCTGTGCCCTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCAGGTGT‑Tgg < 2:328501/100‑1 (MQ=255)
tttGCTATCTTAACTGCGTGCGGCCTGAAAAACAGTGCTGTGCCCTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCTGGTGT‑TGgcgc < 2:2222785/100‑1 (MQ=255)
tttGCTATCTTAACTGCGTGCGGCCTGAAAAACAGTGCTGTGCCCTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCAGGTGT‑TGgcgc < 1:420393/100‑1 (MQ=255)
tGCTATCTTAACTGCGTGCGGCCTGAAAAACAGTGCTGTGCCCTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCAGGTGT‑TGGCGCAg < 2:3202931/100‑1 (MQ=255)
tGCTATCTTAACTGCGTGCGGCCTGAAAAACAGTGCTGTGCCCTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCAGGTGT‑TGGCGCAg > 1:3274801/1‑100 (MQ=255)
gCTATCTTAACTGCGTGCGGCCTGAAAAACAGTGCTGTGCCCTTGTAAATCATCATAATAATTTACGGCGCAGCCAAGATTTCCCAGGTGT‑TGACGCAGt > 1:141653/1‑100 (MQ=255)
cTATCTTAACTGCGTGCGGCCTGAAAAACAGTGCTGTGCCCTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCAGGTGT‑TGGCGCAGTa > 2:2174748/1‑100 (MQ=255)
tATCTTAACTGCGTGCGGCCTGAAAAACAGTGCTGTGCCCTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCAGGTGT‑TGGCGCAGTAt > 2:948860/1‑100 (MQ=255)
aTCTTAACTGCGTGCGGCCTGAAAAACAGTGCTGTGCCCTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCAGGTGT‑TGGCGCAGTAtt > 1:2895134/1‑100 (MQ=255)
tCTTAACTGCGTGCGGCCTGAAAAACAGTGCTGTGCCCTTGTAACTCATCATAATAATTTACGGCGCAACCAAGATTTCCCAGGTGT‑TGGCGCAGTATTc > 2:121583/1‑100 (MQ=255)
ttAACTGCGTGCGGCCTGAAAAACAGTGCTGTGCCCTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCAGGTGT‑TGGCGCAGTATTcgc < 1:2587256/100‑1 (MQ=255)
tAACTGCGTGCGGCCTGAAAAACAGTGCTGTGCCCTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCAGGTGT‑TGGCGCAGTATTcgcg > 2:1309965/1‑100 (MQ=255)
tAACTGCGTGCGGCCTGAAAAACAGTGCTGTGCCCTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCAGGTGT‑TGGCGCAGTATTcgcg < 2:1730788/100‑1 (MQ=255)
tAACTGCGTGCGGCCTGAAAAACAGTGCTGTGCCCTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCAGGTGT‑TGGCGCAGTATTcgcg < 1:1524998/100‑1 (MQ=255)
cTGCGTGCGGCCTGAAAAACAGTGCTGTGCCCTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCAGGTGT‑TGGCGCAGTATTCGCGCAc > 2:192057/1‑100 (MQ=255)
gtgcgGCCTGAAAAACAGTGCTGTGCCCTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCAGGTGT‑TGGCGCAGTATTCGCGCACCCCg > 2:1346842/1‑100 (MQ=255)
cgGCCTGAAAAACAGTGCTGTGCCCTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCAGGTGT‑TGGCGCAGTATTCGCGCACCCCGGTc < 1:2327079/100‑1 (MQ=255)
cgGCCTGAAAAACAGTGCTGTGCCCTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCAGGTGT‑TGGCGCAGTATTCGCGCACCCCGGTc < 1:3012239/100‑1 (MQ=255)
ccTGAAAAACAGTGCTGTGCCCTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCAGGTGT‑TGGCGCAGTATTCGCGCACCCCGGTCTAg < 2:3063898/100‑1 (MQ=255)
cTGAAAAACAGTGCTGTGCCCTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCAGGTGT‑TGGCGCAGTATTCGCGCACCCCGGTCTAG‑c > 1:2705707/1‑100 (MQ=255)
tGAAAAACAGTGCTGTGCCCTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCAGGTGT‑TGGCGCAGTATTCGCGCACCCCGGTCTAG‑cc > 1:1318469/1‑100 (MQ=255)
tGAAAAACAGTGCTGTGCCCTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCAGGTGT‑TGGCGCAGTATTCGCGCACCCCGGTCTAG‑cc > 2:757850/1‑100 (MQ=255)
gAAAAACAGTGCTGTGCCCTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCAGGTGT‑TGGCGCAGTATTCGCGCACCCCGGTCTAG‑CCg > 2:1531064/1‑100 (MQ=255)
aaaaaCAGTGCTGTGCCCTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCAGGTGT‑TGGCGCAGTATTCGCGCACCCCGGTCTAG‑CCgg < 1:50856/100‑1 (MQ=255)
aaaaaCAGTGCTGTGCCCTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCAGGTGT‑TGGCGCAGTATTCGCGCACCCCGGTCTAG‑CCgg < 1:2391332/100‑1 (MQ=255)
aaaaaCAGTGCTGTGCCCTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCAGGTGT‑TGGCGCAGTATTCGCGCACCCCGGTCTAG‑CCgg > 1:519132/1‑100 (MQ=255)
aaaaaCAGTGCTGTGCCCTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCAGGTGT‑CGGCGCAGTATTCGCGCACCCCGGTCTAG‑CCgg < 2:2234523/100‑1 (MQ=255)
aaaaCAGTGCTGTGCCCTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCAGGTGT‑TGGCGCAGTATTCGCGCACCCCGGTCTAG‑CCggg > 1:1025019/1‑100 (MQ=255)
aaaaCAGTGCTGTGCCCTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCAGGTGT‑TGGCGCAGTATTCGCGCACCCCGGTCTAG‑CCggg < 2:1279066/100‑1 (MQ=255)
aaaaCAGTGCTGTGCCCTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCAGGTGT‑TGGCGCAGTATTCGCGCACCCCGGTCTAG‑CCggg > 2:3454455/1‑100 (MQ=255)
aaaCAGTGCTGTGCCCTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCAGGTGT‑TGGCGCAGTACTCGCGCACCCCGGTCTAG‑CCgggg > 1:2862893/1‑100 (MQ=255)
cAGTGCTGTGCCCTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCAGGTGT‑TGGCGCAGTATTCGCGCACCCCGG‑CTAGACCGGGGtgc < 2:2030969/100‑3 (MQ=255)
aGTGCTGTGCCCTTGTAACTCATCATAATAATTTACGGCGCCGCCAAGATTTCCCAGGTGT‑TGGCGCAGTATTCGCGCACCCCGG‑CTAGACCGGGGtgcg < 1:1407230/100‑4 (MQ=255)
aGTGCTGTGCCCTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCAGGTGT‑TGGCGCAGTATTCGCGCACCCCGG‑CTAGACCGGGGtgcg < 1:2538916/100‑4 (MQ=255)
aGTGCTGTGCCCTTGTAACTCATCATAAGAATTTACGGCGCAGCCAAGATTTCCCTGGTGT‑TGGCGCAGTATTCGCGCACCCCGG‑CTAGACCGGGGtgcg < 2:1156284/100‑4 (MQ=255)
tGCTGTGCCCTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCAGGTGT‑TGGCGCAGTATTCGCGCACCCCGGTCTTG‑CCGGGGtgcgcg < 2:2356110/100‑6 (MQ=255)
gCTGTGCCCTTGTAACTCATCATAATATTTTACGGCGCAGCCAAGATTTCCCAGGTGT‑TGGCGCAGTATTCGCGCACCCCGGTCTAG‑CCGGGGTCAtttt < 2:1189548/100‑1 (MQ=255)
gCTGTGCCCTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCAGGTGT‑TGGCGCAGTATTCGCGCACCCCGGTCTAG‑CCGGGGTCAtttt > 1:3472974/1‑100 (MQ=255)
gCTGTGCCCTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCAGGTGT‑TGGCGCAGTATTCGCGCACCCCGGTCTAG‑CCGGGGTCAtttt > 1:196328/1‑100 (MQ=255)
cTGTGCCCTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGCTCTCCCAGGTGT‑TGGCGCAGTATTCGCGCACCCCGG‑CTAGACCGGGGtgcgcgaa < 1:3309785/100‑8 (MQ=37)
cTGTGCCCTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCAGGTGT‑TGGCGCAGTATTCGCGCACCCCGG‑CTAGACCGGGGtgcgcgaa < 2:2151223/100‑8 (MQ=38)
tgtgCCCTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCAGGTGT‑TGGCGCAGTATTCGCGCACCCCGGTCTAG‑CCGGGGTCAtttttt < 2:2787978/100‑1 (MQ=255)
tgtgCCCTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTGCCCAGGTGT‑TGGCGCAGTATTCGCGCACCCCGGTCTAG‑CCGGGGTCAtttttt < 2:2831192/100‑1 (MQ=255)
gtgCCCTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCAGGTGT‑TGGCGCAGTATTCGCGCACCCCGGTCTAG‑CCGGGGTCATTTTTTa < 2:1193233/100‑1 (MQ=255)
gtgCCCTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCAGGTGT‑TGGCGCAGTATTCGCGCACCCCGGTCTAG‑CCGGGGTCATTTTTTa < 1:1844089/100‑1 (MQ=255)
gtgCCCTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCAGGTGT‑TGGCGCAGTATTCGCGCACCCCGGTCTAG‑CCGGGGTCATTTTTTa < 2:1608297/100‑1 (MQ=255)
tgCCCTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCAGGTGT‑TGGCGCAGTATTCGCGCACCCCGGTCTAG‑CCGGGGTCATTTTTTAg < 2:188203/100‑1 (MQ=255)
gCCCTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCAGGTGT‑TGGCGCAGTATTCGCGCACCCCGGTCTAG‑CCGGGGTCATTTTTTAGt < 2:977177/100‑1 (MQ=255)
gCCCTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCAGGTGT‑TGGCGCAGTATTCGCGCACCCCGGTCTAG‑CCGGGGTCATTTTTTAGt > 1:2491594/1‑100 (MQ=255)
ccTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCAGGTGT‑TGGCGCAGTATTCGCGCACCCCGGTCTAG‑CCGGGGTCATTTTTTAGTgg > 1:3081312/1‑100 (MQ=255)
ccTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCAGGTGT‑TGGCGCAGTATTCGCGCACCCCGGTCTAG‑CCGGGGTCATTTTTTAGTgg > 2:602379/1‑100 (MQ=255)
tGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCAGGTGT‑TGGCGCAGTATTCGCGCACCCCGGTCTAG‑CCGGGGTCATTTTTTAGTGGCtt < 1:1961139/100‑1 (MQ=255)
tGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCAGGTGT‑TGGCGCAGTATTCGCGCACCCCGGTCTAG‑CCGGGGTCATTTTTTAGTGGCtt > 2:2953532/1‑100 (MQ=255)
aaCTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCAGGTGT‑TGGCGCAGTATTCGCGCACCCCGGTCTAG‑CCGGGGTCATTTTTTAGTGGCTTTTg > 2:251370/1‑100 (MQ=255)
aaCTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCAGGTGT‑TGGCGCAGTATTCGCGCACCCCGGTCTAG‑CCGGGGTCATTTTTTAGTGGCTTTTg < 1:102400/100‑1 (MQ=255)
aCTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCAGGTGT‑TGGCGCAGTATTCGCGCACCCCGGTCTAG‑CCGGGGTCATTTTTTAGTGGCTTTTGc < 1:1811650/100‑1 (MQ=255)
aCTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCAGGTGT‑TGGCGCAGTATTCGCGCACCCCGGTCTAG‑CCGGGGTCATTTTTTAGTGGCTTTTGc > 2:672123/1‑100 (MQ=255)
cTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCAGGTGT‑TGGCGCAGTATTCGCGCACCCCGGTCTAG‑CCGGGGTCATTTTTTAGTGGCTTTTGcc < 2:2041652/100‑1 (MQ=255)
tcatcaTAATAATTTACGGCGCAGCCAAGATTTCCCAGGTGT‑TGGCGCAGTATTCGCGCACCCCGGTCTAG‑CCGGGGTCATTTTTTAGTGGCTTTTGcca < 2:3177115/100‑1 (MQ=255)
catcatAATAATTTACGGCGCAGCCAAGATTTCCCAGGTGT‑TGGCGCAGTATTCGCGCACCCCGGTCTAG‑CCGGGGTCATTTTTTAGTGGCTTTTGccac > 2:2575278/1‑100 (MQ=255)
catcatAATAATTTACGGCGCAGCCAAGATTTCCCAGGTGT‑TGGCGCAGTATTCGCGCACCCCGGTCTAG‑CCGGGGTCATTTTTTAGTGGCTTTTGccac < 1:17649/100‑1 (MQ=255)
atcatAATAATTTACGGCGCAGCCAAGATTTCCCAGGTGT‑TGGCGCAGTATTCGCGCACCCCGGTCTAG‑CCGGGGTCATTTTTTAGTGGCTTTTGccacc > 1:2213028/1‑100 (MQ=255)
atcatAATAATTTACGGCGCAGCCAAGATTTCCCAGGTGT‑TGGCGCAGTATTCGCGCACCCCGGTCTAG‑CCGGGGTCATTTTTTAGTGGCTTTTGccacc > 1:2212929/1‑100 (MQ=255)
atcatAATAATTTACGGCGCAGCCAAGATTTCCCAGGTGT‑TGGCGCAGTATTCGCGCACCCCGGTCTAG‑CCGGGGTCATTTTTTAGTGGCTTTTGccacc < 1:173780/100‑1 (MQ=255)
tcatAATAATTTACGGCGCAGCCAAGATTTCCCAGGTGT‑TGGCGCAGTATTCGCGCACCCCGGTCTAG‑CCGGGGTCATTTTTTAGTGGCTTTTGccaccc > 2:3144777/1‑100 (MQ=255)
tcatAATAATTTACGGCGCAGCCAAGATTTCCCAGGTGT‑TGGCGCAGTATTCGCGCACCCCGGTCTAG‑CCGGGGTCATTTTTTAGTGGCTTTTGccaccc < 1:2184326/100‑1 (MQ=255)
ataataATTTACGGCGCAGCCAAGATTTCCCAGGTGT‑TGGCGCAGTATTCGCGCACCCCGGTCTAG‑CCGGGGTCATTTTTTAGTGGCTTTTGccacccac > 1:2532250/1‑100 (MQ=255)
taataaTTTACGGCGCAGCCAAGATTTCCCAGGTGT‑TGGCGCAGTATTCGCGCACCCCGGTCTAG‑CCGGGGTCATTTTTTAGTGGCTTTTGCCACCCACg < 1:3209679/100‑1 (MQ=255)
taataaTTTACGGCGCAGCCAAGATTTCCCAGGTGT‑TGGCGCAGTATTCGCGCACCCCGGTCTAG‑CCGGGGTCATTTTTTAGTGGCTTTTGCCACCCACg > 1:3068587/1‑100 (MQ=255)
atTTACGGCGCAGCCAAGATTTCCCTGGTGT‑TGGCGCAGTATTCGCGCACCCCGGTCTAG‑CCGGGGTCATTTTTTAGTGGCTTTTGCCACCCACGCTTTc < 1:968486/100‑1 (MQ=255)
atTTACGGCGCAGCCAAGATTTCCCAGGTGT‑TGGCGCAGTATTCGCGCACCCCGGTCTAG‑CCGGGGTCATTTTTTAGTGGCTTTTGCCACCCACGCTTTc > 2:399317/1‑100 (MQ=255)
tttACGGCGCAGCCAAGATTTCCCAGGTGT‑TGGCGCAGTATTCGCGCACCCCGGTCTAG‑CCGGGGTCATTTTTTAGTGGCTTTTGCCACCCACGCTTTCa < 1:2953485/100‑1 (MQ=255)
tttACGGCGCAGCCAAGATTTCCCAGGTGT‑TGGCGCAGTATTCGCGCACCCCGGTCTAG‑CCGGGGTCATTTTTTAGTGGCTTTTGCCACCCACGCTTTCa > 2:184051/1‑100 (MQ=255)
ttACGGCGCAGCCAAGATTTCCCAGGTGT‑TGGCGCAGTATTCGCGCACCCCGGTCTAG‑CCGGGGTCATTTTTTAGTGGCTTTTGCCACCCACGCTTTCAg < 2:1086956/100‑1 (MQ=255)
ttACGGCGCAGCCAAGATTTCCCAGGTGT‑TGGCGCAGTATTCGCGCACCCCGGTCTAG‑CCGGGGTCATTTTTTAGTGGCTTTTGCCACCCACGCTTTCAg < 2:3473030/100‑1 (MQ=255)
cGGGGCAGCCAAGATTTCCCAGGTGT‑TGGCGCAGTATTCGCGCACCCCGGTCTAG‑CCGGGGTCATTTTTTAGTGGCTTTTGACATCCACGCTTTCAGCAc < 1:831915/100‑1 (MQ=255)
ggCGCAGCCAAGATTTCCCAGGTGT‑TGGCGCAGTATTCGCGCACCCCGGTCTAG‑CCGGGGTCATTTTTTAGTGGCTTTTGCCACCCACGCTTTCAGCACt > 2:3444685/1‑100 (MQ=255)
ggCGCAGCCAAGATTTCCCAGGTGT‑TGGCGCAGTATTCGCGCACCCCGGTCTAG‑CCGGGGTCATTTTTTAGTGGCTTTTGCCACCCACGCTTTCAGCACt > 2:3020009/1‑100 (MQ=255)
ggCGCAGCCAAGATTTCCCAGGTGT‑TGGCGCAGTATTCGCGCACCCCGGTCTAG‑CCGGGGTCATTTTTTAGTGGCTTTTGCCACCCACGCTTTCAGCACt < 2:3068637/100‑1 (MQ=255)
ggCGCAGCCAAGATTTCCCAGGTGT‑TGGCGCAGTATTCGCGCACCCCGGTCTAG‑CCGGGGTCATTTTTTAGTGGCTTTTGCCACACACGCTTTCAGCACt > 2:582859/1‑100 (MQ=255)
cgcAGCCAAGATTTCCCAGGTGT‑TGGCGCAGTATTCGCGCACCCCGGTCTAG‑CCGGGGTCATTTTTTAGTGGCTTTTGCCACCCACGCTTTCAGCACTTc < 1:3237917/100‑1 (MQ=255)
gcAGCTAAGACTTCCC‑AGTGTGTGGCGCAGTATTCGCTCTCCCCGGTCTAG‑CCGGGGTCATTTTTTAGTGGCTTTTGCCACCCACGCTTTCAGc < 1:3224445/94‑1 (MQ=255)
aGCCAAGATTTCCCAGGTGT‑TGGCGCAGTATTCGCGCACCCCGGTCTAG‑CCGGGGTCATTTTTTAGTGGCTTTTGCCACCCACGCTTTCAGCACTTCTAc > 1:1896633/1‑100 (MQ=255)
aGCCAAGATTTCCCAGGTGT‑TGGCGCAGTATTCGCGCACCCCGGTCTAG‑CCGGGGTCACTTTTTAGTGGCTTTTGCCACCCACGCTTTCAGCACTTCTAc > 1:771908/1‑100 (MQ=255)
gCCAAGATTTCCCCGGTGT‑GGGCGCTGTATTCGCGCACCCCGGTCTAG‑CCGGGGTCATTTTTTAGTGGCTTTTGCCACCCACGCTTTCAGCACTTc < 1:2274789/96‑1 (MQ=255)
gCCAAGATTTCCCAGGTGT‑TGGCGCAGTATTCGCGCACCCCGGTCTAG‑CCGGGGTCATTTTTTAGTGGCTTTTGCCACCCACGCTTTCAGCACTTCTAcg > 2:605606/1‑100 (MQ=255)
cAAGATTTCCCAGGTGT‑TGGCGCAGTATTCGCGCACCCCGGTCTAG‑CCGGGGTCATTTTTTAGTGGCTTTTGCCACCCACGCTTTCAGCACTTCTAcgtc > 2:1303151/1‑100 (MQ=255)
aaGATTTCCCAGGTGT‑TGGCGCAGTATTCGCGCACCCCGGTCTAG‑CCGGGGTCATTTTTTAGTGGCTTTTGCCACCCACGCTTTCAGCACTTCTAcgtcg < 1:2248204/100‑1 (MQ=255)
aaGATTTCCCAGGTGT‑TGGCGCAGTATTCGCGCACCCCGGTCTAG‑CCGGGGTCATTTTTTAGTGGCTTTTGCCACCCACGCTTTCAGCACTTCTAcgtcg < 2:2543538/100‑1 (MQ=255)
aaGATTTCCCAGGTGT‑TGGCGCAGTATTCGCGCACCCCGGTCTAG‑CCGGGGTCATTTTTTAGTGGCTTTTGCCACCCACGCTTTCAGCACTTCTAcgtcg < 2:295725/100‑1 (MQ=255)
aGATTTCCCAGGTGT‑TGGCGCAGTATTCGCGCACCCCGGTCTAG‑CCGGGGTCATTTTTTAGTGGCTTTTGCCACCCACGCTTTCAGCACTTCTAcgtcgt > 1:1626447/1‑100 (MQ=255)
gATTTCCCAGGTGT‑TGGCGCAGTATTCGCGCACCCCGGTCTAG‑CCGGGGTCATTTTTTAGTGGCTTTTGCCACCCACGCTTTCAGCACTTCTACGTCGTg < 2:2375871/100‑1 (MQ=255)
cccAGGTGT‑TGGCGCAGTATTCGCGCACCCCGGTCTAG‑CCGGGGTCATTTTTTAGTGGCTTTTGCCACCCACGCTTTCAGCACTTCTACGTCGTGACGcc > 2:2133531/1‑100 (MQ=255)
cccAGGTGT‑TGGCGCAGTATTCGCGCACCCCGGTCTAG‑CCGGGGTCATTTTTTAGTAGCTTTTGCCACCCACGCTTTCAGCACTTCTACGTCGTGACGcc < 1:157516/100‑1 (MQ=255)
|
CATTTAAGTTTTGCTATCTTAACTGCGTGCGGCCTGAAAAACAGTGCTGTGCCCTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCTGGTGT‑TGGCGCAGTATTCGCGCACCCCGGTCTAG‑CCGGGGTCATTTTTTAGTGGCTTTTGCCACCCACGCTTTCAGCACTTCTACGTCGTGACGCC > NC_000913/3350551‑3350744
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
