Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A11 F256 I0 R1
|
328 |
102.7 |
5123138 |
93.4% |
4785010 |
99.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
3,350,648 |
T→A |
100% |
intergenic (‑189/+41) |
elbB ← / ← arcB |
isoprenoid biosynthesis protein with amidotransferase‑like domain/aerobic respiration control sensor histidine protein kinase, cognate to two‑component response regulators ArcA and RssB |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,350,648 | 0 | T | A | 96.2%
| 340.3
/ 1.9
| 105 | intergenic (‑189/+41) | elbB/arcB | isoprenoid biosynthesis protein with amidotransferase‑like domain/aerobic respiration control sensor histidine protein kinase, cognate to two‑component response regulators ArcA and RssB |
| Reads supporting (aligned to +/- strand): ref base T (3/1); new base A (49/52); total (52/53) |
| Fisher's exact test for biased strand distribution p-value = 3.63e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.81e-01 |
Only 100 of 105 total aligned reads displayed.
ATTTAAGTTTTGCTATCTTAACTGCGTGCGGCCTGAAAAACAGTGCTGTGCCCTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCTGGTGTTGGCGCAGTATTCGCGCACCCCGGTCTAG‑CCGGGGTCATTTTTTAGTGGCTTTTGCCACCCACGCTTTCAGCACTTCTACGTCGTGACGCC > NC_000913/3350552‑3350744
|
aTTTAAGTTTTGCTATCTTAACTGCGTGCGGCCTGAAAAACAGTGCTGTGCCCTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCAGgt > 1:721353/1‑100 (MQ=255)
aTTTAAGTTTTGCTATCTTAACTGCGTGCGGCCTGAAAAACAGTGCTGTGCCCTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCAGgt > 1:745525/1‑100 (MQ=255)
aTTTAAGTTTTGCTATCTTAACTGCGTGCGGCCTGAAAAACAGTGCTGTGCCCTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCAGgt > 2:1105702/1‑100 (MQ=255)
tttAAGTTTTGCTATCTTAACTGCGTGCGGCCTGAAAAACAGTGCTGTGCCCTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCAGgtg < 1:1039817/100‑1 (MQ=255)
tttAAGTTTTGCTATCTTAACTGCGTGCGGCCTGAAAAACAGTGCTGTGCCCTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCAGgtg > 2:422054/1‑100 (MQ=255)
ttAAGTTTTGCTATCTTAACTGCGTGCGGCCTGAAAAACAGTGCTGTGCCCTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCAGgtgt < 1:226507/100‑1 (MQ=255)
ttAAGTTTTGCTATCTTAACTGCGTGCGGCCTGAAAAACAGTGCTGTGCCCATGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCAGgtgt < 2:2303939/100‑1 (MQ=255)
aGTTTTGCTATCTTAACTGCGTGCGGCCTGAAAAACAGTGCTGTGCCCTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCAGGTGTTgg < 2:378610/100‑1 (MQ=255)
aGTTTTGCTATCTTAACTGCGTGCGGCCTGAAAAACAGTGCTGTGCCCTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCAGGTGTTgg > 2:2447316/1‑100 (MQ=255)
tttGCTATCTTAACTGCGTGCGGCCTGAAAAACAGTGCTGTGCCCTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCAGGTGTTGgcgc < 1:2056722/100‑1 (MQ=255)
tttGCTATCTTAACTGCGTGCGGCCTGAAAAACAGTGCTGTGCCCTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCAGGTGTTGgcgc < 1:1388293/100‑1 (MQ=255)
ttGCTATCTTAACTGCGTGCGGCCTGAAAAACAGTGCTGTGCCCTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCAGGTGTTGGCGCa < 1:582359/100‑1 (MQ=255)
ttGCTATCTTAACTGCGTGCGGCCTGAAAAACAGTGCTGTGCCCTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCAGGTGTTGGCGCa < 1:1881092/100‑1 (MQ=255)
ttGCTATCTTAACTGCGTGCGGCCTGAAAAACAGTGCTGTGCCCTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCAGGTGTTGGCGCa < 1:171104/100‑1 (MQ=255)
tGCTATCTTAACTGCGTGCGGCCTGAAAAACAGTGCTGTGCCCTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCAGGTGTTGGCGCAg < 1:882415/100‑1 (MQ=255)
gCTATCTTAACTGCGTGCGGCCTGAAAAACAGTGCTGTGCCCTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCAGGTGTTGGCGCAGt > 1:406879/1‑100 (MQ=255)
tATCTTAACTGCGTGCGGCCTGAAAAACAGTGCTGTGCCCTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCAGGTGTTGGCGCAGTAt > 2:1608054/1‑100 (MQ=255)
tgtttatagcgtgcgGCCTTAAAAATAGTGCTTTTCCCTTGTAACTCACCCTATTAATTTACGGCTCAGCCCCGCTTTCCCAAGTGTTGGCGCAGTa < 2:2078812/89‑1 (MQ=255)
tCTTAACTGCGTGCGGCCTGAAAAACAGTGCTGTGCCCTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCAGGTGTTGGCGCAGTATTc > 1:1751074/1‑100 (MQ=255)
tAACTGCGTGCGGCCTGAAAAACAGTGCTGTGCCCTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCAGGTGTTGGCGCAGTATTcgcg < 1:469597/100‑1 (MQ=255)
aaCTGCGTGCGGCCTGAAAAACAGTGCTGTGCCCTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCAGGTGTTGGCGCAGTATTCgcgc < 1:498/100‑1 (MQ=255)
tgcgtgcgGCCTGAAAAACAGTGCTGTGCCCTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCAGGTGTTGGCGCAGTATTCGCGCAcc < 2:1504591/100‑1 (MQ=255)
gcgtgcgGCCTGAAAAACAGTGCTGTGCCCTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCTGGTGTTGGCGCAGTATTCGCGCAccc > 1:1098846/1‑100 (MQ=255)
gcgtgcgGCCTGAAAAACAGTGCTGTGCCCTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCAGGTGTTGGCGCAGTATTCGCGCAccc > 1:1693179/1‑100 (MQ=255)
cgtgcgGACTGAAAAACAGTGCTGTGCCCTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCAGGTGTTGGCGCAGTATTCGCGCAcccc > 1:1340704/1‑100 (MQ=255)
gcgGCCTGAAAAACAGTGCTGTGCCCTTGTAACTCATCATAATAATTTACGGCGCAGCCACGATTTCCCAGGTGTTGGCGCAGTATTCGCGCACCCCGGt > 2:1817470/1‑100 (MQ=255)
gCCTGAAAAACAGTGCTGTGCCCTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCAGGTGTTGGCGCAGTATTCGCGCACCCCGGTCTa > 1:1193688/1‑100 (MQ=255)
gCCTGAAAAACAGTGCTGTGCCCTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCAGGTGTTGGCGCAGTATTCGCGCACCCCGGTCTa > 1:2262338/1‑100 (MQ=255)
ccTGAAAAACAGTGCTGTGCCCTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCAGGTGTTGGCGCAGTATTCGCGCACCCCGGTCTAg < 1:1653981/100‑1 (MQ=255)
cTGAAAAACAGTGCTGTGCCCTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCTGGTGTTGGCGCAGTATTCGCGCACCCCGGTCTAG‑c > 2:2520642/1‑100 (MQ=255)
cTGAAAAACAGTGCTGTGCCCTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCTGATGTTGGCGCAGTATTCGCGCACCCCGGTCTAG‑c < 2:1693174/100‑1 (MQ=255)
cTGAAAAACAGTGCTGTGCCCTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCAGGTGTTGGCGCAGTATTCGCGCACCCCGGTCTAG‑c < 1:102446/100‑1 (MQ=255)
cTGAAAAACAGTGCTGTGCCCTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCAGGTGTTGGCGCAGTATTCGCGCACCCCGGTCTAG‑c > 2:1840458/1‑100 (MQ=255)
tGAAAAACAGTGCTGTGCCCTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCAGGTGTTGGCGCAGTATTCGCGCACCCCGGTCTAG‑cc > 2:830177/1‑100 (MQ=255)
gAAAAACAGTGCTGTGCCCTTGTAACTCATCATCATAATTTACGGCGCAGCCAAGATTTCCCAGGTGTTGGCGCAGTATTCGCGCACCCCGGTCTAG‑CCg > 2:1688541/1‑100 (MQ=255)
gAAAAACAGTGCTGTGCCCTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCAGGTGTTGGCGCAGTATTCGCGCACCCCGGTCTAG‑CCg > 1:1403253/1‑100 (MQ=255)
gAAAAACAGTGCTGTGCCCTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCAGGTGTTGGCGCAGTATTCGCGCACCCCGGTCTAG‑CCg > 1:980977/1‑100 (MQ=255)
aaaaaCAGTGCTGTGCCCTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCAGGTGTTGGCGCAGTATTCGCGCACCCCGGTCTAG‑cc < 2:1551082/98‑1 (MQ=255)
aaaaaCAGTGCTGTGCCCTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCAGGTGTTGGCGCAGTATTCGCGCACCCCGGTCTAG‑CCgg < 1:993011/100‑1 (MQ=255)
aaaaaCAGTGCTGTGCCCTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCAGGTGTTGGCGCAGTATTCGCGCACCCCGGTCTAG‑CCg < 2:1642040/99‑1 (MQ=255)
aaaaaCAGTGCTGTGCCCTTGTAACTCATCAGAATAATTTACGGCGCAGCCAAGATTTCCCAGGTGTGGGCGCAGTATTCGCGCACCCCGGTCTAG‑CCgg < 2:637819/100‑1 (MQ=255)
aaaaCAGTGCTGTGCCCTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCAGGTGTTGGCGCAGTATTCGCGCACCCCGGTCTAG‑CCggg > 2:2411221/1‑100 (MQ=255)
aaaaCAGTGCTGTGCCCTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCAGGTGTTGGCGCAGTATTCGCGCACCCCGGTCTAG‑CCggg < 1:2076104/100‑1 (MQ=255)
aaaCAGTGCTGTGCCCTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCAGGTGTTGGCGCAGTATTCGCGCACCCCGGTCTAG‑CCgggg > 1:370848/1‑100 (MQ=255)
aaaCAGTGCTGTGCCCTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCAGGTGTTGGCGCAGTATTCGCGCACCCCGGTCTAG‑CCgggg < 1:453146/100‑1 (MQ=255)
aaaCAGTGCTGTGCCCTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCAGGTGTTGGCGCAGTATTCGCGCACCCCGGTCTAG‑CCgggg > 1:1469535/1‑100 (MQ=255)
aaCAGTGCTGTGCCCTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCAGGTGTTGGCGCAGTATTCGCGCACCCCGGTCTAG‑CCGGGGt < 1:2180570/100‑1 (MQ=255)
aCAGTGCTGTGCCCTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCAGGTGTTGGCGCAGTATTCGCGCACCCCGGTCTAG‑CCGGGGTc > 1:717008/1‑100 (MQ=255)
cAGTGCTGTGCCCTTGTAACTCATCAGAATAATTTACGGCGCAGCCAAGATTTCCCAGGTGTTGGCGCAGTATTCGCGCACCCC‑GTCTAGACCGGGGtg < 2:1587011/99‑2 (MQ=255)
aGTGCTGTGCCCTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCAGGTGTTGGCGCAGTATTCGCGCACCCCGG‑CTAGACCGGGGtgcg < 1:1767827/100‑4 (MQ=255)
aGTGCTGTGCCCTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCAGGTGTTGGCGCAGTATTCGCGCACCCCGG‑CTAGACCGGGGtgcg < 1:1379255/100‑4 (MQ=255)
tGCTGTGCCCTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCAGGTGTTGGCGCAGTATTCGCGCACCCCGG‑CTAGACCGGGGtgcgcg < 1:1608065/100‑6 (MQ=255)
atctcccTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCAGGTGTTGGCGCAGTATTCGCGCACCCCGGTCTAG‑CCGGGGTCAtttttt < 2:554092/96‑1 (MQ=255)
gtgCCCTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCAGGTGTTGGCGCAGTATTCGCGCACCCCGGTCTAG‑CCGGGGTCATTTTTTa > 2:1649372/1‑100 (MQ=255)
gtgCCCTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCAGGTGTTGGCGCAGTATTCGCGCACCCCGGTCTAG‑CCGGGGTCATTTTTTa > 2:1942951/1‑100 (MQ=255)
tgCCCTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCAGGTGTTGGCGCAGTATTCGCGCACCCCGGTCTAG‑CCGGGGTCATTTTTTAg < 1:488997/100‑1 (MQ=255)
tgCCCTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCAGGTGTTGGCGCAGTATTCGCGCACCCCGGTCTAG‑CCGGGGTCATTTTTTAg < 2:1403242/100‑1 (MQ=255)
cccTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCAGGTGTTGGCGCAGTATTCGCGCACCCCGGTCTAG‑CCGGGGTCATTTTTTAgat > 1:554099/1‑98 (MQ=255)
cccTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCAGGTGTTGGCGCAGTATTCGCGCACCCCGGTCTAG‑CCGGGGTCATTTTTTAGTg > 1:1471504/1‑100 (MQ=255)
tAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCAGGTGTTGGCGCAGTATTCGCGCACCCCGGTCTAG‑CCGGGGTCATTTTTTAGTGGCtttt < 1:544555/100‑1 (MQ=255)
aCTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCAGGTGTTGGCGCAGTATTCGCGCACCCCGGTCTAG‑CCGGGGTCATTTTTTAGTGGCTTTTGc < 2:804737/100‑1 (MQ=255)
aCTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCAGGTGTTGGCGCAGTATTCGCGCACCCCGGTCTAG‑CCGGGGTCATTTTTTAGTGGCTTTTGc < 1:26401/100‑1 (MQ=255)
aCTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCAGGTGTTGGCGCAGTATTCGCGCACCCCGGTCTAG‑CCGGGGTCATTTTTTAGTGGCTTTTGc > 2:1872419/1‑100 (MQ=255)
aCTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCAGGTGTTGGCGCAGTATTCGCGCACCCCGGTCTAG‑CCGGGGTCATTTTTTAGTGGCTTTTGc < 1:1942965/100‑1 (MQ=255)
cTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCAGGTGTTGGCGCAGTATTCGCGCACCCCGGTCTAG‑CCGGGGTCATTTTTTAGTGGCtttagat > 2:348790/1‑96 (MQ=255)
cTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCAGGTGTTGGCGCAGTATTCGCGCACCCCGGTCTAG‑CCGGGGTCATTTTTTAGTGGCTTTTGcc < 1:224275/100‑1 (MQ=255)
cTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCAGGTGTTGGCGAAGTATTCGCGCACCCCGGTCTAG‑CCGGGGTCATTTTTTAGTGGCTTTTg < 2:191632/98‑1 (MQ=255)
catcatAATAATTTACGGCGCAGCCAAGCTTTCCCAGGTGTTGGCGCAGTATTCGCGCACACCGGTCTAG‑CCGGGGACATTGTTTAGTGGCTTTTGcc > 2:1298925/1‑98 (MQ=255)
atcatAATAATTTACGGCGCAGCCAAGATTTCCCAGGTGTTGGCGCAGTATTCGCGCACCCCGGTCTAG‑CCGGGGTCATTTTTTAGTGGCTTTTGccacc < 2:1132308/100‑1 (MQ=255)
atcatAATAATTTACGGCGCAGCCAAGATTTCCCAGGTGTTGGCGCAGTATTCGCGCACCCCGGTCTAG‑CCGGGGTCATTTTTTAGTGGCTTTTGccacc > 2:1087233/1‑100 (MQ=255)
tcatAATAATTTACGGCGCAGCCAAGATTTCCCAGGTGTTGGCGCAGTATTCGCGCACCCCGGTCTAG‑CCGGGGTCATTTTTTAGTGGCTTTTGccaccc > 2:505123/1‑100 (MQ=255)
tcatAATAATTTACGGCGCAGCCAAGATTTCCCAGGTGTTGGCGCAGTATTCGCGCACCCCGGTCTAG‑CCGGGGTCATTTTTTAGTGGCTTTTGccaccc > 2:965608/1‑100 (MQ=255)
tcatAATAATTTACGGCGCAGCCAAGATTTCCCAGGTGTTGGCGCAGTATTCGCGCACCCCGGTCTAG‑CCGGGGTCATTTTTTAGTGGCTTTTGccaccc > 1:1782511/1‑100 (MQ=255)
catAATAATTTACGGCGCAGCCAAGATTTCCCAGGTGTTGGCTCAGTATTCGCGCACCCCGGTCTAG‑CCGGGGTCATTTTTTAGTGGCTTTTGccaccca < 1:620063/100‑1 (MQ=255)
catAATAATTTACGGCGCAGCCAAGATTTCCCAGGTGTTGGCGCAGTATTCGCGCACCCCGGTCTAG‑CCGGGGTCATTTTTTAGTGGCTTTTGccaccc > 2:1503343/1‑99 (MQ=255)
taataaTTTACGGCGCAGCCAAGATTTCCCTGGTGTTGGCGCAGTATTCGCGCACCCCGGTCTAG‑CCGGGGTCATTTTTTAGTGGCTTTTGCCACCCACg > 1:2437860/1‑100 (MQ=255)
taataaTTTACGGCGCAGCCAAGATTTCCCAGGTGTTGGCGCAGTATTCGCGCACCCCGGTCTAG‑CCGGGGTCATTTTTTAGTGGCTTTTGCCACCCACg > 1:1818716/1‑100 (MQ=255)
taataaTTTACGGCGCAGCCAAGATTTCCCAGGTGTTGGCGCAGTATTCGCGCACCCCGGTCTAG‑CCGGGGTCATTTTTTAGTGGCTTTTGCCACCCACg > 2:1613761/1‑100 (MQ=255)
aataatTTACGGCGCAGCCAAGATTTCCCAGGTGTTGGCGCAGTATTCGCGCACCCCGGTCTAG‑CCGGGGTCATTTTTTAGTGGCTTTTGCCACCCACGc > 1:1366462/1‑100 (MQ=255)
ataatTTACGGCGCAGCCAAGATTTCCCAGGTGTTGGCGCAGTATTCGCGCACCCCGGTCTAG‑CCGGGGTCATTTTTTAGTGGCTTTTGCCACCCACGCt > 1:2005174/1‑100 (MQ=255)
ataatTTACGGCGCAGCCAAGATTTCCCAGGTGTTGGCGCAGTATTCGCGCACCCCGGTCTAG‑CCGGGGTCATTTTTTAGTGGCTTTTGCCACCCACGCt > 1:1460874/1‑100 (MQ=255)
ataatTTACGGCGCAGCCAAGATTTCCCAGGTGTTGGCGCAGTATTCGCGCACCCCGGTCTAG‑CCGGGGTCATTTTTTAGTGGCTTTTGCCACCCACGCt > 2:2436909/1‑100 (MQ=255)
atTTGCGGCGCAGCCAAGATTTCCCAGGTGTTGGCGCAGTATTCGCGCACCCCGGTCTAG‑CCGGGGTCATTTTTTAGTGGCTTTTGCCACCCACGCTTTc < 1:210218/100‑1 (MQ=255)
atTTACGGCGCAGCCAAGATTTCCCAGGTGTTGGCGCAGTATTCGCGCACCCCGGTCTAG‑CCGGGGTCATTTTTTAGTGGCTTTTGCCACCCACGCTTTc < 2:643411/100‑1 (MQ=255)
atTTACGGCGCAGCCAAGATTTCCCAGGTGTTGGCGCAGTATTCGCGCACCCCGGTCTAG‑CCGGGGTCATTTTTTAGTGGCTTTTGCCACCCACGCTTTc > 1:2285523/1‑100 (MQ=255)
tttACGGCGCAGCCAAGATTTCCCAGGTGTTGGCGCAGTATTCGCGCACCCCGGTCTAG‑CCGGGGTCATTTTTTAGTGGCTTTTGCCACCCACGCTTTCa < 1:1131886/100‑1 (MQ=255)
aCGGCGCAGCCAAGATTTCCCAGGTGTTGGCGCAGTATTCGCGCACCCCGGTCTAG‑CCGGGGTCATTTTTTAGTGGCTTTTGCCACCCACGCTTTCAGc < 1:2456630/99‑1 (MQ=255)
aCGGCGCAGCCAAGATTTCCCAGGTGTTGGCGCAGTATTCGCGCACCCCGGTCTAG‑CCGGGGTCATTTTTTAGTGGCTTTTGCCACCCACGCTTTCAGCa < 2:751124/100‑1 (MQ=255)
cGGCGCAGCCAAGATTTCCCAGGTGTTGGCGCAGTATTCGCGCACCCCGGTCTAG‑CCGGGGTCATTTTTTAGTGGCTTTTGCCACCCACGCTTTCAGCAc < 1:1094927/100‑1 (MQ=255)
ccAAGATTTCCCAGGTGTTGGCGCAGTATTCGCGCACCCCGGTCTAG‑CCGGGGTCATTTTTTAGTGGCTTTTGCCACCCACGCTTTCAGCACTTCTAcgt > 1:1193624/1‑100 (MQ=255)
naaGATTTCCCAGGTGTTGGCGCAGTATTCGCGCACCCCGGTCTAG‑CCGGGGTCATTTTTTAGTGGCTTTTGCCACCCACGCTTTCAGCACTTCTAcgtc > 2:1829064/2‑100 (MQ=255)
cAAGATTTCCCAGGTGTTGGCGCAGTATTCGCGCACCCCGGTCTAG‑CCGGGGTCATTTTTTAGTGGCTTTTGCCACCCACGCTTTCAGCACTTCTAcgtc > 1:2387620/1‑100 (MQ=255)
cAAGATTTCCCAGGTGTTGGCGCAGTATTCGCGCACCCCGGTCTAG‑CCGGGGTCATTTTTTAGTGGCTTTTGCCACCCACGCTTTCAGCACTTCTAcgtc > 1:1951/1‑100 (MQ=255)
aTTTCCCAGGTGTTGGCGCAGTATTCGCGCACCCCGGTCTAG‑CCGGGGTCATTTTTTAGTGGCTTTTGCCAGCCACGCTTTCAGCACTTCTACGTCGTg < 2:1378936/99‑1 (MQ=255)
aTTTCCCAGGTGTTGGCGCAGTATTCGCGCACCCCGGTCTAG‑CCGGGGTCATTTTTTAGTGGCTTTTGCCACCCACGCTTTCAGCACTTCTACGTCGTGa < 2:2100985/100‑1 (MQ=255)
tttCCCAGGTGTTGGCGCAGTATTCGCGCACCCCGGTCTAG‑CCGGGGTCATTTTTTAGTGGCTTTTGCCACCCACGCTTTCAGCACTTCTACGTCGTGAc < 2:1189357/100‑1 (MQ=255)
tCCCAGGTGTTGGCGCAGTATTCGCGCACCCCGGTCTAG‑CCGGGGTCATTTTTTAGTGGCTTTTGCCACCCACGCTTTCAGCACTTCTACGTCGTGACGc > 1:2102111/1‑100 (MQ=255)
cccAGGTGTTGGCGCAGTATTCGCGCACCCCGGTCTAG‑CCGGGGTCATTTTTTAGTGGCTTTTGCCACCCACGCTTTCAGCACTTCTACGTCGTGACGcc > 2:1591445/1‑100 (MQ=255)
cccAGGTGTTGGCGCAGTATTCGCGCACCCCGGTCTAG‑CCGGGGTCATTTTTTAGTGGCTTTTGCCACCCACGCTTTCAGCACTTCTACGTCGTGACGcc < 2:1690904/100‑1 (MQ=255)
cccAGGTGTTGGCGCAGTATTCGCGCACCCCGGACTAG‑CCGGGGTCATTTTTTAGTGGCTTTTGCCACCCCCGCTTTCAGCACTTCTACGTCGTGACGcc > 2:1540379/1‑100 (MQ=255)
|
ATTTAAGTTTTGCTATCTTAACTGCGTGCGGCCTGAAAAACAGTGCTGTGCCCTTGTAACTCATCATAATAATTTACGGCGCAGCCAAGATTTCCCTGGTGTTGGCGCAGTATTCGCGCACCCCGGTCTAG‑CCGGGGTCATTTTTTAGTGGCTTTTGCCACCCACGCTTTCAGCACTTCTACGTCGTGACGCC > NC_000913/3350552‑3350744
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
