Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A11 F256 I1 R1 186 136.5 6958264 92.1% 6408561 99.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,500,814 Δ1 bp intergenic (‑23/‑446) yjgX ← / → yjgZ pseudogene fragment/uncharacterized protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,500,8110T.99.0% 468.9 / ‑2.5 104intergenic (‑20/‑449)yjgX/yjgZpseudogene fragment/uncharacterized protein
Reads supporting (aligned to +/- strand):  ref base T (0/1);  new base . (47/56);  total (47/57)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.35e-01

Only 100 of 117 total aligned reads displayed.

GTCCGCCAGAAAATCACCACGAATACCAGAATCGCGGCACTGACCAGAAAATGATAAACAGGAAACACGGGGCGGTTCACTTTGCTTTCTCCTGTAGTGTTTTCTGTAGGTTCTGAACCGGTTCTAGCGGGGTTGTGAGGCTGATGGCAATCGCCGGGCTCTTCCTGCATGTTACACTGGTACTGCAAGAGGGGG  >  NC_000913/4500712‑4500906
                                                                                                   |                                                                                               
gtCCGCCAGAAAATCACCACGAATACCAGAATCGCGGCACTGACCAGAAAATGATAAACAGGAAACACGGGGCGGTTCACTTTGCTTTCTCCTGTAgtgt                                                                                                 <  2:656097/100‑1 (MQ=255)
gtCCGCCAGAAAATCACCACGAATACCAGAATCGCGGCACTGACCAGAAAATGATAAACAGGAAACACGGGGCGGTTCACTTTGCTTTCTCCTGTAgtgt                                                                                                 <  1:61869/100‑1 (MQ=255)
gtCCGCCAGAAAATCACCACGAATACCAGAATCGCGGCACTGACCAGAAAATGATAAACAGGAAACACGGGGCGGTTCACTTTGCTTTCTCCTGTAgtgt                                                                                                 >  2:2243147/1‑100 (MQ=255)
 tCCGCCAGAAAATCACCACGAATACCAGAATCGCGGCACTGACCAGAAAATGATAAACAGGAAACACGGGGCGGTTCACTTTGCTTTCTCCTGTAGTGtt                                                                                                <  2:2623754/100‑1 (MQ=255)
 tCCGCCAGAAAATCACCACGAATACCAGAATCGCGGCACTGACCAGAAAATGATAAACAGGAAACACGGGGCGGTTCACTTTGCTTTCTCCTGTAGTGtt                                                                                                <  2:1070457/100‑1 (MQ=255)
  ccGCCAGAAAATCACCACGAATACCAGAATCGCGGCACTGACCAGAAAATGATAAACAGGAAACACGGGGCGGTTCACTTTGCTTTCTCCTGTAGTGttt                                                                                               >  2:1317610/1‑100 (MQ=255)
   cGCCAGAAAATCACCACGAATACCGGAATCGCGGCACTGACCAGAAAATGATAAACAGGAAACACGGGGCGGTTCACTTTGCTTTCTCCTGTAGTGtttc                                                                                              <  1:607972/100‑2 (MQ=255)
   cGCCAGAAAATCACCACGAATACCAGAATCGCGGCACTGACCAGAAAATGATAAACAGGAAACACGGGGCGGTTCACTTTGCTTTCTCCTGTAGTGtttc                                                                                              <  1:187105/100‑2 (MQ=255)
   cGCCAGAAAATCACCACGAATACCAGAATCGCGGCACTGACCAGAAAATGATAAACAGGAAACACGGGGCGGTTCACTTTGCTTTCTCCTGTAGTGtttc                                                                                              >  2:1606924/1‑99 (MQ=255)
    gCCAGAAAATCACCACGAATACCAGAATCGCGGCACTGACCAGAAAATGATAAACAGGAAACACGGGGCGGTTCACTTTGCTTTCTCCTGTAGTGtttct                                                                                             >  1:2452474/1‑98 (MQ=255)
    gCCAGAAAATCACCACGAATACCAGAATCGCGGCACTGACCAGAAAATGATAAACAGGAAACACGGGGCGGTTCACTTTGCTTTCTCCTGTAGTGtttct                                                                                             >  1:1849604/1‑98 (MQ=255)
      cAGAAAATCACCACGAATACCAGAATCGCGGCACTGACCAGAAAATGATAAACAGGAAACACGGGGCGGTTCACTTTGCTTTCTCCTGTAGTGtttctgt                                                                                           >  2:3243467/1‑96 (MQ=255)
       aGAAAATCACCACGAATACCAGAATCGCGGCACTGACCAGCAAATGATAAACAGGAAACACGGGGCGGTTCACTTTGCTTTCTCCTGTAGTG‑TTTCTGTa                                                                                         <  1:2028236/100‑1 (MQ=255)
       aGAAAATCACCACGAATACCAGAATCGCGGCACTGACCAGAAAATGATAAACAGGAAACACGGGGCGGTTCACTTTGCTTTCTCCTGTAGTG‑TTTCTGTa                                                                                         <  1:473906/100‑1 (MQ=255)
       aGAAAATCACCACGAATACCAGAATCGCGGCACTGACCAGAAAATGATAAACAGGAAACACGGGGCGGTTAACTTTGCTTTCTCCTGTAGTG‑TTTCTGTa                                                                                         >  2:2028265/1‑100 (MQ=255)
        gAAAATCACCACGAATACCAGAATCGCGGCACTGACCAGAAAATGATAAACAGGAAACACGGGGCGGTTCACTTTGCTTTCTCCTGTAGTG‑TTTCTGTAg                                                                                        <  2:1550377/100‑1 (MQ=255)
            aTCACCACGAATACCAGAATCGCGGCACTGACCAGAAAATGATAAACAGGAAACACGGGGCGGTTCACTTTGCTTTCTCCTGTAGTG‑TTTCTGTAGGTTc                                                                                    >  2:584954/1‑100 (MQ=255)
             tCACCACGAATACCAGAATCGCGGCACTGACCAGAAAATGATAAACAGGAAACACGGGGCGGTTCACTTTGCTTTCTCCTGTAGTG‑TTTCTGTAGGTTCt                                                                                   <  2:2915947/100‑1 (MQ=255)
             tCACCACGAATACCAGAAGCGCGGCACTGACCAGAAAATGATAAACAGGAAACACGGGGCGGTTCACTTTGCTTTCTCCTGTAGTG‑TTTCTGTAGGTTCt                                                                                   <  1:747483/100‑1 (MQ=255)
              cactacGAATACCAGAATCGCGGCACTGACCAGAAAATGATAAACAGGAAACACGGGGCTGTTCACTTTGCTTTCTCCTGTAGTG‑TTTCTGTAGGTTCTg                                                                                  <  1:985551/100‑1 (MQ=255)
              caccacGAATACCAGAATCGCGGCACTGACCAGAAAATGATAAACAGGAAACACGGGGCGGTTCACTTTGCTTTCTCCTGTAGTG‑TTTCTGTAGGTTCTg                                                                                  <  1:805465/100‑1 (MQ=255)
              caccacGAATACCAGAATCGCGGCACTGACCAGAAAATGATAAACAGGAAACACGGGGCGGGTCACTTTGCTTTCTCCTGTAGTG‑TTTCTGTAGGTTCTg                                                                                  >  2:3390030/1‑100 (MQ=255)
               accacGAATACCAGAATCGCGGCACTGACCAGAAAATGATAAACAGGAAACACGGGGCGGTTCACTTTGCTTTCTCCTGTAGTG‑TTTCTGTAGGTTCTGa                                                                                 <  1:825087/100‑1 (MQ=255)
               accacGAATACCAGAATCGCGGCACTGACCAGAAAATGATAAACAGGAAACACGGGGCGGTTCACTTTGCTTTCTCCTGTAGTG‑TTTCTGTAGGTTCTGa                                                                                 >  2:199970/1‑100 (MQ=255)
                  acGAATACCAGAATCGCGGCACTGACCAGAAAATGATAAACAGGAAACACGGGGCGGTTCACTTTGCTTTCTCCTGTAGTG‑TTTCTGTAGGTTCTGAAcc                                                                              <  2:2681768/100‑1 (MQ=255)
                  acGAATACCAGAATCGCGGCACTGACCAGAAAATGATAAACAGGAAACACGGGGCGGTTCACTTTGCTTTCTCCTGTAGTG‑TTTCTGTAGGTTCTGAAcc                                                                              <  2:1990140/100‑1 (MQ=255)
                  acGAAAACCAGAATCGCGGCACTGACCAGAAAATGATAAACAGGAAACACGAGGCGGTTCACTTTGCTTTCTCCTGTAGTG‑TTTCTGTAGGTTCTGAAcc                                                                              <  1:3121862/100‑1 (MQ=255)
                   cGAATACCAGAATCGCGGCACTGACCAGAAAATGATAAACAGGAAACACGGGGCGGTTCACTTTGCTTTCTCCTGTAGTG‑TTTCTGTAGGTTCTGAACCg                                                                             >  2:875624/1‑100 (MQ=255)
                    gAATACCAGAATCGCGGCACTGACCAGAAAATGATAAACAGGAAACACGGGGCGGTTCACTTTGCTTTCTCCTGTAGTG‑TTTCTGTAGGTTCTGAACCgg                                                                            <  2:2008972/100‑1 (MQ=255)
                     aaTACCAGAATCGCGGCACTGACCAGAAAATGATAAACAGGAAACACGGGGCGGTTCACTTTGCTTTCTCCTGTAGTG‑TTTCTGTAGGTTCTGAACCGGt                                                                           <  2:1287081/100‑1 (MQ=255)
                      aTACCAGAATCGCGGCACTGACCAGAAAATGATAAACAGGAAACACGGGGCGGTTCACTTTGCTTTCTCCTGTAGTG‑TTTCTGTAGGTTCTGAACCGGtt                                                                          >  2:3084222/1‑100 (MQ=255)
                         ccAGAATCGCGGCACTGACCAGAAAATGATAAACAGGAAACACGGGGCGGTTCACTTTGCTTTCTCCTGTAGTG‑TTTCTGTAGGTTCTGAACCGGTTCTa                                                                       >  1:1145372/1‑100 (MQ=255)
                         ccAGAATCGCGGCACTGACCAGAAAATGATAAACAGGAAACACGGGGCGGTTCACTTTGCTTTCTCCTGTAGTG‑TTTCTGTAGGTTCTGAACCGGTTCTa                                                                       >  1:3230832/1‑100 (MQ=255)
                         ccAGAATCGCGGCACTGACCAGAAAATGATAAACAGGAAACACGGGGCGGTTCACTTTGCTTTCTCCTGTAGTG‑TTTCTGTAGGTTCTGAACCGGTTCTa                                                                       >  1:2609953/1‑100 (MQ=255)
                          cAGAATCGCGGCACTGACCAGAAAATGATAAACAGGAAACACGGGGCGGTTCACTTTGCTTTCTCCTGTAGTG‑TTTCTGTAGGTTCTGAACCGGTtata                                                                       >  1:541297/1‑99 (MQ=255)
                          cAGAATCGCGGCACTGACCAGAAAATGATAAACAGGAAACACGGGGCGGTTCACTTTGCTTTCTCCTGTAGTG‑TTTCTGTAGGTTCTGAACCGGTTCTAg                                                                      >  2:2073362/1‑100 (MQ=255)
                            gAATCGCGGCACTGACCAGAAAATGATAAACAGGAAACACGGGGCGGTTCACTTTGCTTTCTCCTGTAGTG‑TTTCTGTAGGTTCTGAACCGGTTCTAGCg                                                                    >  2:1623970/1‑100 (MQ=255)
                             aaTCGCGGCACTGACCAGAAAATGATAAACAGGAAACACGGGGCGGTTCACTTTGCTTTCTCCTGTAGTG‑TTTCTGTAGGTTCTGAACCGGTTCTAGCgg                                                                   <  2:2690980/100‑1 (MQ=255)
                              aTCGCGGCACTGACCAGAAAATGATAAACAGGAAACACGGGGCGGTTCACTTTGCTTTCTCCTGTAGTG‑TTTCTGTAGGTTCTGAACCGGTTCTAGCggg                                                                  <  2:3363240/100‑1 (MQ=255)
                               tCGCGGCACTGACCAGAAAATGATAAACAGGAAACACGGGGCGGTTCACTTTGCTTTCTCCTGTAGTG‑TTTCTGTAGGTTCTGAACCGGTTCTAGCgggg                                                                 <  2:2538828/100‑1 (MQ=255)
                               tCGCGGCACTGACCAGAAAATGATAAACAGGAAACACGGGGCGGTTCACTTTGCTTTCTCCTGTAGTG‑TTTCTGTAGGTTCTGAACCGGTTCTAGCgggg                                                                 <  2:3097878/100‑1 (MQ=255)
                                cgcgGCACTGACCAGAAAATGATAAACAGGAAACACGGGGCGGTTCACTTTGCTTTCTCCTGTAGTG‑TTTCTGTAGGTTCTGAACCGGTTCTAGCGGGGt                                                                <  1:63904/100‑1 (MQ=255)
                                cgcgGCACTGACCAGAAAATGATAAACAGGAAACACGGGGCGGTTCACTTTGCTTTCTCCTGTAGTG‑TTTCTGTAGGTTCTGAACCGGTTCTAGCGGGGt                                                                <  1:1652831/100‑1 (MQ=255)
                                    gCACTGACCAGAAAATGATAAACAGGAAACACGGGGCGGTTCACTTTGCTTTCTCCTGTAGTG‑TTTCTGTAGGTTCTGAACCGGTTCTAGCGGGGTtgtg                                                            >  1:641467/1‑100 (MQ=255)
                                      aCTGACCAGAAAATGATAAACAGGAAACACGGGGCGGTTCACTTTGCTTTCTCCTGTAGTGTTTTCTGTAGGTTCTGAACCGGTTCTAGCGGGGTtgtg                                                            <  1:1446459/99‑1 (MQ=255)
                                      aCTGACCAGAAAATGATAAACAGGAAACACGGGGCGGTTCACTTTGCTTTCTCCTGTAGTG‑TTTCTGTAGGTTCTGAACCGGTTCTAGCGGGGTTGTGAg                                                          >  1:2926674/1‑100 (MQ=255)
                                      aCTGACCAGAAAATGATAAACAGGAAACACGGGGCGGTTCACTTTGCTTTCTCCTGTAGTG‑TTTCTGTAGGTTCTGAACCGGTTCTAGCGGGGTTGTGAg                                                          <  2:1930584/100‑1 (MQ=255)
                                       cTGACCAGAAAATGATAAACAGGAAACACGGGGCGGTTCACTTTGCTTTCTCCTGTAGTG‑TTTCTGTAGGTTCTGAACCGGTTCTAGCGGGGTTGTGAgg                                                         <  2:2271612/100‑1 (MQ=255)
                                         gACCAGAAAATGATAAACAGGAAACACGGGGCGGTTCACTTTGCTTTCTCCTGTAGTG‑TTTCTGTAGGTTCTGAACCGGTTCTAGCGGGGTTGTGAGGCt                                                       >  1:2215710/1‑100 (MQ=255)
                                           ccAGAAAATGATAAACAGGAAACACGGGGCGGTTCACTTTGCTTTCTCCTGTAGTG‑TTTCTGTAGGTTCTGAACCGGTTCTAGCGGGGTTGTGAGGCTGa                                                     >  1:2314895/1‑100 (MQ=255)
                                             aGAAAATGATAAACAGGAAACACGGGGCGGTTCACTTTGCTTTCTCCTGTAGTG‑TTTCTGTAGGTTCTGAACCGGTTCTAGCGGGGTTGTGAGGCTGATg                                                   <  2:3090224/100‑1 (MQ=255)
                                             aGAAAATGATAAACAGGAAACACGGGGCGGTTCACTTTGCTTTCTCCTGTAGTG‑TTTCTGTAGGTTCTGAACCGGTTCTAGCGGGGTTGTGAGGCTGATg                                                   >  2:1551329/1‑100 (MQ=255)
                                             aGAAAATGATAAACAGGAAACACGGGGCGGTTCACTTTGCTTTCTCCTGTAGTG‑TTTCTGTAGGTTCTGAACCGGTTCTAGCGGGGTTGTGAGGCTGATg                                                   >  1:1278991/1‑100 (MQ=255)
                                              gAAAATGATAAACAGGAAACACGGGGCGGTTCACTTTGCTTTCTCCTGTAGTG‑TTTCTGTAGGTTCTGAACCGGTTCTAGCGGGGTTGTGAGGCTGATgg                                                  >  2:1198988/1‑100 (MQ=255)
                                               aaaaTGATAAACAGGAAACACGGGGCGGTTCACTTTGCTTTCTCCTGTAGTG‑TTTCTGTAGGTTCTGAACCGGTTCTAGCGGGGTTGTGAGGCTGATGGc                                                 <  1:3423983/100‑1 (MQ=255)
                                               aaaaTGATAAACAGGAAACACGGGGCGGTTCACTTTGCTTTCTCCTGTAGTG‑TTTCTGTAGGTTCTGAACCGGTTCTAGCGGGGTTGTGAGGCTGATGGc                                                 <  2:759738/100‑1 (MQ=255)
                                                   tGATAAACAGGAAACACGGGGCGGTTCACTTTGCTTTCTCCTGTAGTG‑TTTCTGTAGGTTCTGAACCGGTTCTAGCGGGGTTGTGAGGCTGATGGCACTc                                             >  1:3213849/1‑100 (MQ=255)
                                                      tAAACAGGAAACACGGGGCGGTTCACTTTGCTTTCTCCTGTAGTG‑TTTCTGTAGGTTCTGAACCGGTTCTAGCGGGGTTGTGAGGCTGATGGCAATCGcc                                          >  1:1754292/1‑100 (MQ=255)
                                                      tAAACAGGAAACACGGGGCGGTTCACTTTGCTTTCTCCTGTAGTG‑TTTCTGTAGGTTCTGAACCGGTTCTAGCGGGGTTGTGAGGCTGATGGCAATCGcc                                          >  2:3398257/1‑100 (MQ=255)
                                                        aaCAGGAAACACGGGGCGGTTCACTTTGCTTTCTCCTGTAGTG‑TTTCTGTAGGTTCTGAACCGGTTCTAGCGGGGTTGTGAGGCTGATGGCAATCGCCgg                                        >  2:1368255/1‑100 (MQ=255)
                                                        aaCAGGAAACACGGGGCGGTTCACTTTGCTTTCTCCTGTAGTG‑TTTCTGTAGGTTCTGAACCGGTTCTAGCGGGGTTGTGAGGCTGATGGCAATCGCCgg                                        >  1:2341167/1‑100 (MQ=255)
                                                        aaCAGGAAACACGGGGCGGTTCACTTTGCTTTCTCCTGTAGTG‑TTTCTGTAGGTTCTGAACCGGTTCTAGCGGGGTTGTGAGGCTGATGGCAATCGCCgg                                        <  2:3212560/100‑1 (MQ=255)
                                                         aCAGGAAACACGGGGCGGTTCACTTTGCTTTCTCCTGTAGTG‑TTTCTGTAGGTTCTGAACCGGTTCTAGCGGGGTTGTGAGGCTGATGGCAATCGCCggg                                       <  2:2219869/100‑1 (MQ=255)
                                                         aCAGGAAACACGGGGCGGTTCACTTTGCTTTCTCCTGTAGTG‑TTTCTGTAGGTTCTGAACCGGTTCTAGCGGGGTTGTGAGGCTGATGGCAATCGCCggg                                       >  1:145226/1‑100 (MQ=255)
                                                          cAGGCAACACGGGGCGGTTCACTTTGATTTCTCCTGTCGTG‑TTTCTGTAGGTTCTGAACCGGTTCTAGCGGGGTTGTGAGGCTGATGGCAATCGCCg                                         >  1:146803/1‑97 (MQ=255)
                                                          cAGGAAACACGGGGCGGTTCACTTTGCTTTCTCCTGTAGTG‑TTTCTGTAGGTTCTGAACCGGTTCTAGCGGGGTTGTGAGGCTGATGGCAATCGCCggn                                       <  1:255683/99‑2 (MQ=255)
                                                          cAGGAAACACGGGGCGGTTCACTTTGCTTTCTCCTGTAGTG‑TTTCTGTAGGTTCTGAACCGGTTCTAGCGGGGTTGTGAGGCTGATGGCAATCGCCGGGc                                      <  2:1818026/100‑1 (MQ=255)
                                                          cAGGAAACACGGGGCGGTTCACTTTGCTTTCTCCTGTAGTG‑TTTCTGTAGGTTCTGAACCGGTTCTAGCGGGGTTGTGAGGCTGATGGCAATCGCCGGGc                                      >  1:575624/1‑100 (MQ=255)
                                                             gAAACACGGGGCGGTTCACTTTGCTTTCTCCTGTAGTG‑CTTCTGTAGGTTCTGAACCGGTTCTTGCGGGTCTGTGAGGCTGATGGCAATTGCATGGct                                     >  1:1649809/1‑98 (MQ=255)
                                                               aaCACGGGGCGGTTCACTTTGCTTTCTCCTGTAGTG‑TTTCTGTAGGTTCTGAACCGGTTCTAGCGGGGTTGTGAGGCTGATGGCAATCGCCGGGCTCTTc                                 >  2:1097120/1‑100 (MQ=255)
                                                                acacGGGGCGGTTCACTTTGCTTTCTCCTGTAGTG‑TTTCTGTAGGTTCTGAACCGGTTCTAGCGGGGTTGTGAGGCTGATGGCAATCGCCGGGCTCTTcc                                <  2:1279008/100‑1 (MQ=255)
                                                                acacGGGGCGGTTCACTTTGCTTTCTCCTGTAGTG‑TTTCTGTAGGTTCTGAACCGGTTCTAGCGGGGTTGTGAGGCTGATGGCAATCGCCGGGCTCTTcc                                <  2:2164070/100‑1 (MQ=255)
                                                                acacGGGGCGGTTCACTTTGCTTTCTCCTGTAGTG‑TTTCTGTAGGTTCTGAACCGGTTCTAGCGGGGTTGTGAGGCTGATGGCAATCGCCGGGCTCTTcc                                <  2:2215742/100‑1 (MQ=255)
                                                                 cacGGGGCGGTTCACTTTGCTTTCTCCTGTAGTG‑TTTCTGTAGGTTCTGAACCGGTTCTAGCGGGGTTGTGAGGCTGATGGCAATCGCCGGGCTCTTCCt                               <  1:2682201/100‑1 (MQ=255)
                                                                 cacGGGGCGGTTCACTTTGCTTTCTCCTGTAGTG‑TTTCTGTAGGTTCTGAACCGGTTCTAGCGGGGTTGTGAGGCTGATGGCAATCGCCGGGCTCTTCCt                               >  1:687097/1‑100 (MQ=255)
                                                                  acGGGGCGGTTCACTTTGCTTTCTCCTGTAGTG‑TTTCTGTAGGTTCTGAACCGGTTCTAGCGGGGTTGTGAGGCTGATGGCAATCGCCGGGCTCTTCCTg                              <  1:3398205/100‑1 (MQ=255)
                                                                     gggCGGTTCACTTTGCTTTCTCCTGTAGTG‑TTTCTGTAGGTTCTGAACCGGTTCTAGCGGGGTTGTGAGGCTGATGGCAATCGCCGGGCTCTTCCTGCAt                           >  2:1403785/1‑100 (MQ=255)
                                                                      ggCGGTTCACTTTGCTTTCTCCTGTAGTG‑TTTCTGTAGGTTCTGAACCGGTTCTAGCGGGGTTGTGAGGCTGATGGCAATCGCCGGGCTCTTCCTGCATg                          <  2:2349428/100‑1 (MQ=255)
                                                                         ggTTCACTTTGCTTTCTCCTGTAGTG‑TTTCTGTAGGTTCTGAACCGGTTCTAGCGGGGTTGTGAGGCTGATGGCAATCGCCGGGCTCTTCCTGCATGTTa                       <  1:2090610/100‑1 (MQ=255)
                                                                          gTTCACTTTGCTTTCTCCTGTAGTG‑TTTCTGTAGGTTCTGAACCGGTTCTAGCGGGGTTGTGAGGCTGATGGCAATCGCCGGGCTCTTCCTGCATGTTac                      >  2:1485654/1‑100 (MQ=255)
                                                                          gTTCACTTTGCTTTCTCCTGTAGTG‑TTTCTGTAGGTTCTGAACCGGTTCTAGCGGGGTTGTGAGGCTGATGGCAATCGCCGGGCTCTTCCTGCATGTTac                      >  2:3028326/1‑100 (MQ=255)
                                                                             cACTTTGCTTTCTCCTGTAGTG‑TTTCTGTAGGTTCTGAACCGGTTCTAGCGGGGTTGTGAGGCTGATGGCAATCGCCGGGCTCTTCCTGCATGTTACACt                   <  1:532697/100‑1 (MQ=255)
                                                                               cTTTGCTTTCTCCTGTAGTG‑TTTCTGTAGGTTCTGAACCGGTTCTAGCGGGGTTGTGAGGCTGATGGCAATCGCCGGGCTCTTCCTGCATGTTACACTgg                 >  2:2982942/1‑100 (MQ=255)
                                                                                   gCTTTCTCCTGTAGTG‑TGTCGGTAGGTTCTGAACCGGTTCTAGCGGGGTTGTGAGGCTGATGGCAATCGCCGGGCTCTTCCTGCATGTTACACTGGTAc              <  2:3224435/99‑1 (MQ=255)
                                                                                    cTTTCTCCTGTAGTG‑TTTCTGTAGGTTCTGAACCGGTTCTAGCGGGGTTGTGAGGCTGATGGCAATCGCCGGGCTCTTCCTGCATGTTACACTGGTACtn            <  1:901921/100‑2 (MQ=255)
                                                                                    cTTTCTCCTGTAGTG‑TTTCTGTAGGTTCTGAACCGGTTCTAGCGGGGTTGTGAGGCTGATGGCAATCGCCGGGCTCTTCCTGCATGTTACACTGGTACTg            <  2:1472584/100‑1 (MQ=255)
                                                                                    cTTTCTCCTGTAGTG‑TTTCTGTAGGTTCTGAACCGGTTCTAGCGGGGTTGTGAGGCTGATGGCAATCGCCGGGCTCTTCCTGCATGTTACACTGGTACTg            >  1:466194/1‑100 (MQ=255)
                                                                                    cTTTCTCCTGTAGTG‑TTTCTGTAGGTTCTGAACCGGTTCTAGCGGGGTTGTGAGGCTGATGGCAATCGCCGGGCTCTTCCTGCATGTTACACTGGTACTg            <  1:2718986/100‑1 (MQ=255)
                                                                                    cTTTCTCCTGTAGTG‑TTTCTGTAGGTTCTGAACCGGTTCTAGCGGGGTTGTGAGGCTGATGGCAATCGCCGGGCTCTGCCTGCATGTTACACTGGTACTg            >  1:716973/1‑100 (MQ=255)
                                                                                     tttCTCCTGTAGTG‑TTTCTGTAGGTTCTGAACCGGTTCTAGCGGGGTTGTGAGGCTGATGGCAATCGCCGGGCTCTTCCTGCATGTTACACTGGTACTGc           <  2:687106/100‑1 (MQ=255)
                                                                                      ttCTCCTGTAGTG‑TTTCTGTAGGTTCTGAACCGGTTCTAGCGGGGTTGTGAGGCTGATGGCCATCGCCGGGCTCTTCCTGCATGTTACACTGGTACTGCa          <  1:2137150/100‑1 (MQ=255)
                                                                                      ttCTCCTGTAGTG‑TTTCTGTAGGTTCTGAACCGGTTCTAGCGGGGTTGTGAGGCTGATGGCAATCGCCGGGCTCTTCCTGCATGTTACACTGGTACTGCa          <  2:2846175/100‑1 (MQ=255)
                                                                                       tctcCTGTCGTG‑TTTCTGTAGGTTCCGACCCGGTTCTAGCGGGGTTGTGAGGCTGATGGCAATCGCCGGGCTCTTCCTGCATGTTACACTGGTACTGCa          <  2:156300/99‑1 (MQ=255)
                                                                                       tctcCTGTAGTG‑TTTCTGTAGGTTCTGAACCGGTTCTAGCGGGGTTGTGAGGCTGATGGCAATCGCCGGGCTCTTCCTGCATGTTACACTGGTACTGCaa         >  1:260286/1‑100 (MQ=255)
                                                                                          ccTGTAGTG‑TTTCTGTAGGTTCTGAACCGGTTCTAGCGGGGTTGTGAGGCTGATGGCAATCGCCGGGCTCTTCCTGCATGTTACACTGGTACTGCAagag      >  2:1367621/1‑100 (MQ=255)
                                                                                          ccTGTAGTG‑TTTCTGTAGGTTCTGAACCGGTTCTAGCGGGGTTGTGAGGCTGATGGCAATCGCCGGGCTCTTCCTGCATGTTACACTGGTACTGCAagag      >  2:3023848/1‑100 (MQ=255)
                                                                                           cTGTAGTG‑TTTCTGTAGGTTCTGAACCGGTTCTAGCGGGGTTGTGAGGCTGATGGCAATCGCCGGGGTCTTCCTGCATGTTACACTCGTACTGCAcgag      >  1:2887173/1‑99 (MQ=255)
                                                                                             gTAGTG‑TTTCTGTAGGTTCTGAACCGGTTCTAGCGGGGTTGTGAGGCTGATGGCAATCGCCGGGCTCTTCCTGCATGTTACACTGGTACTGCAAGAgggg   >  1:1712589/1‑100 (MQ=255)
                                                                                             gTAGTG‑TTTCTGTAGGTTCTGAACCGGTTCTAGCGGGGTTGTGAGGCTGATGGCAATCGCCGGGCTCTTCCTGCATGTTACACTGGTACTGCAAGAgggg   >  1:2356148/1‑100 (MQ=255)
                                                                                              tAGTG‑TTTCTGTAGGTTCTGAACCGGTTCTAGCGGGGTTGTGAGGCTGATGGCAATCGCCGGGCTCTTCCTGCATGTTACACTGGTACTGCAAGAggggg  <  1:3024069/100‑1 (MQ=255)
                                                                                                   |                                                                                               
GTCCGCCAGAAAATCACCACGAATACCAGAATCGCGGCACTGACCAGAAAATGATAAACAGGAAACACGGGGCGGTTCACTTTGCTTTCTCCTGTAGTGTTTTCTGTAGGTTCTGAACCGGTTCTAGCGGGGTTGTGAGGCTGATGGCAATCGCCGGGCTCTTCCTGCATGTTACACTGGTACTGCAAGAGGGGG  >  NC_000913/4500712‑4500906

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A