Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A11 F212 I0 R1 246 122.0 6097616 93.1% 5676880 99.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 4,500,814 Δ1 bp 100% intergenic (‑23/‑446) yjgX ← / → yjgZ pseudogene fragment/uncharacterized protein

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,500,8110T.95.8% 511.4 / 11.7 119intergenic (‑20/‑449)yjgX/yjgZpseudogene fragment/uncharacterized protein
Reads supporting (aligned to +/- strand):  ref base T (1/3);  new base . (37/77);  total (39/80)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

Only 100 of 130 total aligned reads displayed.

GTCCGCCAGAAAATCACCACGAATACCAGAATCGCGGCACTGACCAGAAAATGATAAACAGGAAACACGGGGCGGTTCACTTTGCTTTCTCCTGTAGTGTTTTCTGTAGGTTCTGAACCGGTTCTAGCGGGGTTGTGAGGCTGATGGCAATCGCCGGGCTCTTCCTGCATGTTACACTGGTACTGCAAGAGGGGG  >  NC_000913/4500712‑4500906
                                                                                                   |                                                                                               
  ccGCCAGAAAATCACCACGAATACCAGAATCGCGGCACTGACCAGAAAATGATAAACAGGAAACACGGGGCGGTTCACTTTGCTTTCTCCTGTAGTGttt                                                                                               >  2:880656/1‑100 (MQ=255)
   cGCCAGAAAATCACCACGAATACCAGAATCGCGGCACTGAACAGAAAATGATAAACAGGAAACACGGGGCGGTTCACTTTGCTTTCTCCTGTAGTGtttc                                                                                              >  2:2702150/1‑99 (MQ=255)
    gCCAGAAAATCACCACGAATACCAGAATCGCGGCACTGACCAGAAAATGATAAACAGGAAACACGGGGCGGTTCACTTTGCTTTCTCCTGTAGTGtttct                                                                                             >  2:1212302/1‑98 (MQ=255)
    gCCAGAAAATCACCACGAATACCAGAATCGCGGCACTGACCAGAAAATGATAAACAGGAAACACGGGGCGGTTCACTTTGCTTTCTCCTGTAGTGtttct                                                                                             >  2:1304547/1‑98 (MQ=255)
    gCCAGAAAATCACCACGAATACCAGAATCGCGGCACTGACCAGAAAATGATAAACAGGAAACACGGGGCGGTTCACTTTGCTTTCTCCTGTAGTGtttct                                                                                             >  2:628418/1‑98 (MQ=255)
    gCCAGAAAATCACCACGAATACCAGAATCGCGGCACTGACCAGAAAATGATAAACAGGAAACACGGGGCGGTTCACTTTGCTTTCTCCTGTAGTGtttct                                                                                             >  2:1958769/1‑98 (MQ=255)
     ccAGAAAATCACCACGAATACCAGAATCGCGGCACTGACCAGAAAATGATAAACAGGAAACACGGGGCGGTTCACTTTGCTTTCTCCTGTAGTGtttctg                                                                                            <  1:1425935/100‑4 (MQ=255)
      cAGAAAATCACCACGAATACCAGAACCACGGCACTGACCAGAAAATGATAAACAGGAAACACGGGGCGGCTCACTTTGCTTTCTCCTGTCGTGtttctgt                                                                                           >  2:1268913/1‑96 (MQ=255)
       aGAAAATCACCACGAATACCAGAATCGCGGCACTGACCAGAAAATGATAAACAGGAAACACGGGGCGTTTCACTTTGCTTTCTCCTGTAGTG‑TTTCTGTa                                                                                         <  1:2889702/100‑1 (MQ=255)
       aGAAAATCACCACGAATACCAGAATCGCGGCACTGACCAGAAAATGATAAACAGGAAACACGGGGCGGTTCACTTTGCTTTCTCCTGTAGTG‑TTTCTGTa                                                                                         <  2:2213596/100‑1 (MQ=255)
       aGAAAATCACCACGAATACCAGAATCGCGGCACTGACCAGAAAATGATAAACAGGAAACACGGGGCGGTTCACTTTGCTTTCTCCTGTAGTG‑TTTCTGTa                                                                                         <  1:1962976/100‑1 (MQ=255)
        gAAAATCACCACGAATACCAGAATCGCGGCACTGACCAGAAAATGATAAACAGGAAACACGGGGCGGTTCACTTTGCTTTCTCCTGTAGTG‑TTTCTGTAg                                                                                        >  1:2817231/1‑100 (MQ=255)
        gAAAATAACCACGAATACCAGAATCGCGGCACTGACCAGAAAATGATAAACAGGAAACACGGGGCGGTTCACTTTGCTTTCTACTGTAGTCtttctgt                                                                                           >  2:3032891/1‑94 (MQ=255)
             tCACCACGAATACCAGAATCGCGGCACTGACCAGAAAATGATAAACAGGAAACACGGGGCGGTTCACTTTGCTTTCTCCTGTAGTG‑TTTCTGTAGGTTCt                                                                                   <  1:1212313/100‑1 (MQ=255)
              caccacGAATACCAGAATCGCGGCACTGACCAGAAAATGATAAACAGGAAACACGGGGCGGTTCACTTTGCTTTCTCCTGTAGTG‑TTTCTGTAGGTTCTg                                                                                  >  2:1442790/1‑100 (MQ=255)
               accacGAATACCAGAATCGCGGCACTGACCAGAAAATGATAAACAGGAAACACGGGGCGGTTCACTTTGCTTTCTCCTGTAGTG‑TTTCTGTAGGTTCTGa                                                                                 >  1:1832759/1‑100 (MQ=255)
                ccacGAATACCAGAATCGCGGCACTGACCAGAAAATGATAAACAGGAAACACAGGGCGGATCACTTTGATTTCTCCTGTAGTG‑TTTCTGTAGGTTCTGaa                                                                                >  1:154474/1‑100 (MQ=255)
                 cacGAATACCAGAATCGCGGCACTGACCAGAAAATGATAAACAGGAAACACGGGGCGGTTCACTTTGCTTTCTCCTGTAGTG‑TTTCTGTAGGTTCTGa                                                                                 <  2:1842513/98‑1 (MQ=255)
                  acGAATACCAGAATCGCGGCACTGACCAGAAAATGATAAACAGGAAACACGGGGCGGTTCACTTTGCTTTCTCCTGTAGTG‑TTTCTGTAGGTTCTGAAcc                                                                              <  2:2844411/100‑1 (MQ=255)
                  acGAATACCAGAATCGCGGCACTGACCAGAAAATGATAAACAGGAAACACGGGGCGGTTCACTTTGCTTTCTCCTGTAGTG‑TTTCTGTAGGTTCTGAAcc                                                                              <  2:1679860/100‑1 (MQ=255)
                  acGAATACCAGAATCGCGGCACTGACCAGAAAATGATAAACAGGAAACACGGGGCGGTTCACTTTGCTTTCTCCTGTAGTG‑TTTCTGTAGGTTCTGAAcc                                                                              <  1:79769/100‑1 (MQ=255)
                   cGAATACCAGAATCGCGGCACTGACCAGAAAATGATAAACAGGAAACACGGGGCGGTTCACTTTGCTTTCTCCTGTAGTG‑TTTCTGTAGGTTCTGAACCg                                                                             >  2:1017600/1‑100 (MQ=255)
                    gAATACCAGAATCGCGGCACTGACCAGAAAATGATAAACAGGAAACACGGGGCGGTTCACTTTGCTTTCTCCTGTAGTG‑TTTCTGTAGGTTCTGAACCgg                                                                            <  2:590182/100‑1 (MQ=255)
                     aaTACCAGAATCGCGGCACTGACCAGAAAATGATAAACAGGAAACACGGGGCGGTTCACTTTGCTTTCTCCTGTAGTG‑TTTCTGTAGGTTCTGAACCGGt                                                                           <  2:2558176/100‑1 (MQ=255)
                      aaaCCAGAATCGCGGCACTTACCAGAAAATGATAAACAGGAAATACGGGGCGGTTCACTTTGCTTTCTCCTGTAGTG‑TTTCTGTAGGTTCTGAACCGGt                                                                           <  2:2919782/97‑1 (MQ=255)
                        aCCAGAATCGCGGCACTGACCAGAAAATGATAAACAGGAAACACGGGGCGGTTCACTTTGCTTTCTCCTGTAGTG‑TTTCTGTAGGTTCTGAACCGGTTCt                                                                        <  2:511787/100‑1 (MQ=255)
                         ccAGAATCGCGGCACTGACCAGAAAATGATAAACAGGAAACACGGGGCGGTTCACTTTGCTTTCTCCTGTAGTGTTTTCTGTAGGTTCTGAACCGGTTCt                                                                        >  2:1633042/1‑100 (MQ=255)
                         ccAGAATCGCGGCACTGACCAGAAAATGATAAACAGGAAACACGGGGCGGTTCACTTTGCTTTCTCCTGTAGTG‑TTTCTGTAGGTTCTGAACCGGTTCTa                                                                       >  2:3009879/1‑100 (MQ=255)
                          cAGAATCGCGGCACTGACCAGAAAATGATAAACAGGAAACACGGGGCGGTTCACTTTGCTTTCTCCTGTAGTG‑TTTCTGTAGGTTCTGAACCGGTTCTAg                                                                      >  2:2484267/1‑100 (MQ=255)
                            gAATCGCGGCACTGACCAGAAAATGATAAACAGGAAACACGGGGCGGTTCACTTTGCTTTCTCCTGTAGTG‑TTTCTGTAGGTTCTGAACCGGTTCTAGCg                                                                    <  1:2906983/100‑1 (MQ=255)
                              aTCGCGGCACTGACCAGAAAATGATAAACAGGAAACTCGGGGCGGTTCACTTTGCTTTCTCCTGTAGTG‑TTTCTGTAGGTTCTGAACCGGTTCTAGCggg                                                                  <  1:1944263/100‑1 (MQ=255)
                              aTCGCGGCACTGACAAGAAAATGATAAACAGGAAACACGGGGCGGTTCACTTTGCTTTCTCCTGTAGTG‑TTTCTGTAGGTTCTGAACCGGTTCTAGCggg                                                                  >  2:607837/1‑100 (MQ=255)
                               tCGCGGCACTGACCAGAAAATGATAAACAGGAAACACGGGGCGGTTCACTTTGCTTTCTCCTGTAGTG‑TTTCTGTAGGTTCTGAACCGGTTCTAGCgggg                                                                 <  1:191579/100‑1 (MQ=255)
                                  cgGCACTGACCAGAAAATGATAAACAGGAAACACGGGGCGGTTCACTTTGCTTTCTCCTGTAGTG‑TTTCTGTAGGTTCTGAACCGGTTCTAGCGGGGTtg                                                              <  1:546733/100‑1 (MQ=255)
                                    gCACTGACCAGAAAATGATAAACAGGAAACACGGGGCGGTTCACTTTGCTTTCTCCTGTAGTG‑TTTCTGTAGGTTCTGAACCGGTTCTAGCGGGGTtgtg                                                            >  2:1934967/1‑100 (MQ=255)
                                     cACTGACCAGAAAATGATAAACAGGAAACACGGGGCGGTTCACTTTGCTTTCTCCTGTGGTG‑TTTCTGTAGGTTCTGAACCGGTTCTAGCGGGGTTGTGa                                                           <  2:1647544/100‑1 (MQ=255)
                                      aCTGACCAGAAAATGATAAACAGGAAACACGTGGCGGTTCACTTTGCTTTCTCCTGTAGTG‑TTTCTGTAGGTTCTGAACCGGTTCTAGCGGGGTTGTGAg                                                          <  1:285033/100‑1 (MQ=255)
                                      aCTGACCAGAAAATGATAAACAGCAAACACGGGGCGGTTCACTTTGCTTTCTCCTGTAGTG‑TTTCTGTAGGTTCTGAACCGGTTCTAGCGGGGTtgtn                                                            <  2:434185/98‑2 (MQ=255)
                                        tGACCAGAAAATGATAAACAGGAAACACGGGGCGGTTCACTTTGCTTTCTCCTGTAGTG‑TTTCTGTAGGTTCTGAACCGGTTCTAGCGGGGTTGTGAGGc                                                        >  2:1416303/1‑100 (MQ=255)
                                         gACCAGAAAATGATAAACAGGATACACGGGGCGGTTCACTTTGCTTTCTCCTGTAGTG‑TTTCTGTAGGTTCTGAACCGGTTCTAGCGGGGTTGTGAGGc                                                        <  1:937070/99‑1 (MQ=255)
                                         gACCAGAAAATGATAAACAGGAAACACGGGGCGGTTCACTTTGCTTTCTCCTGTAGTGTTTTCTGTAGGTTCTGAACCGGTTCTAGCGGGGTTGTGAGGc                                                        <  2:853764/100‑1 (MQ=255)
                                         gACCAGAAAATGATAAACAGGAAACACGGGGCGGTTCACTTTGCTTTCTCCTGTAGTG‑TTTCTGTAGGTTCTGAACCGGTTCTAGCGGGGTTGTGAGGCt                                                       >  2:1408032/1‑100 (MQ=255)
                                         gACCAGAAAATGATAAACAGGAAACACGGGGCGGTTCACTTTGCTTTCTCCTGTAGTG‑TTTCTGTAGGTTCTGAACCGGTTCTAGCGGGGTTGTGAGGCt                                                       >  1:2879502/1‑100 (MQ=255)
                                          aCCAGAAAATGATAAATAGGAAACACGGGGCGGTTCACTTTGCTTTCTCCTGTAGTG‑TTTCTGTAGGTTCTGAACCGGTTCTAGCGGGGTTGTGAGGCt                                                       <  1:1464768/99‑1 (MQ=255)
                                           ccAGAAAATGATAAACAGGAAACACGGGGCGGTTCACTTTGCTTTCTCCTGTAGTG‑TTTCTGTAGGTTCTGAACCGGTTCTAGCGGGGTTGTGAGGCTGa                                                     >  1:1885191/1‑100 (MQ=255)
                                            cAGAAGATGATAATCAGGAGACTCGGGTCAGTTTGCTTTGCTTTCTCCTGTAGTG‑TTTCTGTAGGTTCTGAACCGTTTTTAGCGATGTTGTTAGGc                                                        <  2:1243901/96‑1 (MQ=255)
                                             aGAAAATGATAAACAGGAAACACGGGGCGGTTCACTTTGCTTTCTCCTGTAGTG‑TTTCTGTAGGTTCTGAACCGGTTCTAGCGGGGTTGTGAGGCTGATg                                                   >  1:37252/1‑100 (MQ=255)
                                              gAAAATGATAAACAGGAAACACGGGGCGGTTCACTTTGCTTTCTCCTGTAGTG‑TTTCTGTAGGTTCTGAACCGGTTCTAGCGGGGTTGTGAGGCTGATgg                                                  <  1:2745109/100‑1 (MQ=255)
                                              gAAAATGATAAACAGGAAACACGGGGCGGTTCACTTTGCTTTCTCCTGTAGT‑ATTTCTGTAGGTTCTAAACCGGTTCTAGCGGGGTTGAGAGACTGATgg                                                  >  1:2223510/1‑100 (MQ=255)
                                               aaaaTGATAAACAGGAAACACGGGGCGGTTCACTTTGCTTTTTCCTGTAGTG‑TTTCTGTAGGTTCTGAACCGGTTCTAGCGGGGTTGTGAGGCTGATGGc                                                 <  1:446296/100‑1 (MQ=255)
                                               aaaaTGATAAACAGGAAACACGGGGCGGTTCACTTTGCTTTCTCCTGTAGTG‑TTTCTGTAGGTTCTGAACCGGTTCTAGCGGGGTTGTGAGGCTGATGGc                                                 <  1:836932/100‑1 (MQ=255)
                                                aaaTGATAAACAGGAAACACGGGGCGGTTCACTTTGCTTTCTCCTGTAGTG‑TTTCTGTAGGTTCTGAACCGGTTCTAGCGGGGTTGTGAGGCTGATgg                                                  <  1:2955785/98‑1 (MQ=255)
                                                  aTGATAAACAGGAATCTCGGGGCGGTTCACTTTGCTTTCTCCTGTAGTGTTTTCTGTAGGTTCTGAACCGGTTCTAGCGGGGTTGTGAGGCTGATGGCaa                                               <  1:169936/100‑1 (MQ=255)
                                                  aTGATAAACAGGAAACACGGGGCGGTTCACTTTGCTTTCTCCTGTAGTG‑TTTCTGTAGGTTCTGAACCGGTTCTAGCGGGGTTGTGAGGCTGATGGCAAt                                              <  1:1442804/100‑1 (MQ=255)
                                                      tAAACAGGAAACACGGGGCGGTTCACTTTGCTTTCTCCTGTAGTG‑TTTCTGTAGGTTCTGAACCGGTTCTAGCGGGGTTGTGAGGCTGATGGCAATCGcc                                          <  2:2703603/100‑1 (MQ=255)
                                                      tAAACAGGAAACACGGGGCGGTTCACTTTGCTTTCTCCTGTAGTG‑TTTCTGTAGGTTCTGAACCGGTTCTAGCGGGGTTGTGAGGCTGATGGCAATCGcc                                          <  1:1304559/100‑1 (MQ=255)
                                                        aaCAGGAAACACGGGGCGGTTCACTTTGCTTTCTCCTGTAGTG‑TTTCTGTAGGTTCTGAACCGGTTCTAGCGGGGTTGTGAGGCTGATGGCAATCGCCgg                                        <  1:1149694/100‑1 (MQ=255)
                                                         aCAGGAAACACGGGGCGGTTCACTTTGCTTTCTCCTGTAGTG‑TTTCTGTAGGTTCTGAACCGGTTCTAGCGGGGTTGTGAGGCTGATGGCAATCGCCggg                                       <  1:1612239/100‑1 (MQ=255)
                                                          cAGGAAACACGGGGCGGTTCACTTTGCTTTCTCCTGTAGTG‑TTTCTGTAGGTTCTGAACCGGTTCTAGCGGGGTTGTGAGGCTGATGGCAATCGCCGGGc                                      >  2:908762/1‑100 (MQ=255)
                                                            ggAAACACGGGGCGGTTCACTTTGCTTTCTCCTGTAGTG‑TTTCTGTAGGTTCTGAACCGGTTCTAGCGGGGTTGTGAGGCTGATGGCAATCGCCGGGctc                                    >  2:760971/1‑100 (MQ=255)
                                                             gAAACACGGGGCGGTTCACTTTGCTTTCTCCTGTAGTG‑TTTCTGTAGGTTCTGAACCGGTTCTAGCGGGGTTGTGAGGCTGATGGCAATCGCCGGGctct                                   <  1:456257/100‑1 (MQ=255)
                                                             gAAACACGGGGCGGTTCACTTTGCTTTCTCCTGTAGTG‑TTTCTGTAGGTTCTGAACCGGTTCTAGCGAGATTGTGAGGCTGATGGCAATCGCCGGGctct                                   >  1:827694/1‑100 (MQ=255)
                                                              aaaCACGGGGCTGTTCACTTTGCTTTCTCCTGTAGTG‑TTTCTGTAGGTTCTGAACCGGTTCTAGCGGGGTTGTGAGGCTGATGGCAATCGCCGGGCTCtt                                  <  1:3032925/100‑1 (MQ=255)
                                                               aaaaaggggCGGTTCACTTTGCTTTTTCCTGTAGTG‑TTTCTGTAGGTTCTGAACCGGTTCTAGCGGGGTTGTGAGGATGATGGCAATCg                                            <  2:867034/84‑1 (MQ=255)
                                                                  acGGGGCGGTTCACTTTGCTTTCTCCTGTAGTG‑TTTCTGTAGGTTCTGAACCGGTTCTAGCGGGGTTGTGAGGCTGATGGCAATCGCCGGGCTCTTCCTg                              <  1:1246313/100‑1 (MQ=255)
                                                                   cGGGGCGGTTCACTTTGCTTTCTCCTGTAGTG‑TTTCTGTAGGTTCTGAACCGGTTCTAGCGGGGTTGTGAGGCTGATGGCAATCGCCGGGCTCTTCCTGc                             <  1:1038038/100‑1 (MQ=255)
                                                                     gggCGGTTCACTTTGCTTTCTCCTGTAGTG‑TTTCTGTAGGTTCTGAACCGGTTCTAGCGGGGTTGTGAGGCTGATGGCAATCGCCGGGCTCTTCCTGCAt                           <  1:2456035/100‑1 (MQ=255)
                                                                       gctgTTCACTTTGCTATCTCCTGTAGTG‑TTTCTGTAGGTTCTGAACCAGTTCTAGCGGGGTTGTGAGGCTGATCGCAATCGCCGGGCTCTTCCTGCATGt                         <  2:2104624/97‑1 (MQ=255)
                                                                        cGGTTCACTTTGCTTTCTCCTGTAGTG‑TTTCTGTAGGTTCTGAACCGGTTCTAGCGGGGTTGTGAGGCTGATGGCAATCGCCGGGCTCTTCCTGCATGtt                        <  1:1069441/100‑1 (MQ=255)
                                                                          gTTCACTTTGCTTTCTCCTGTAGTG‑TTTCTGTAGGTTCTTAACCGGTTCTAGCGGGGTTGTGAGGCTGATGGCAATCGCCGGGCTCTTCCTGCATGTTa                       <  2:27966/99‑1 (MQ=255)
                                                                            tCACTTTGCTTTCTCCTGTAGTG‑TTTCTGTAGGTTCTGAACCGGTTCTAGCGGGGTTGTGAGGCTGATGGCAATCGCCGGGCTCTTCCTGCATGTTacac                    <  1:1338340/100‑1 (MQ=255)
                                                                            tCACTTTGCTTTCTCCTGTAGTG‑TTTCTGTAGGTTCTGAACCGGTTCTAGCGGGGTTGTGAGGCTGATGGCAATCGCCGGGCTCTTCCTGCATGTTacac                    <  2:1959571/100‑1 (MQ=255)
                                                                              aCTTTGCTTTTTCTTGTAGTG‑TTTCTGTAGGTTCTGAACCGGTTCTAGCGGGGTTGTGAGGCTGATGGCAATCGCCGGGCTCTTCCTGCATGTTACACTg                  <  1:444029/100‑1 (MQ=255)
                                                                               cTTTGCTTTCTCCTGTATTG‑TTTCTGTAGGTTCTGAACCGGTTCTAGCGGGGTTGTGAGGCTGATGGCAATCGCCGGGCTCTTCCTGCATGTTACACTgg                 <  1:1156050/100‑1 (MQ=255)
                                                                               cTTTGCTTTCTCCTGTAGTG‑TTTCTGTAGGTTCTGAACCGGTTCTAGCGGGGTTGTGAGGCTGATGGCAATCGCCGGGCTCTTCCTGCATGTTACACTgg                 <  1:1536046/100‑1 (MQ=255)
                                                                               cTTTGCTTTCTCCTGTAGTG‑TTTCTGTAGGTTCTGAACCGGTTCTAGCGGGGTTGTGAGGCTGATGGCAATCGCCGGGCTCTTCCTGCATGTTACACTgg                 <  2:2150394/100‑1 (MQ=255)
                                                                               cTTTGCTTTCGCCTGTAGTG‑TTTCTGTAGGTCCTGAACCGGTTCTAGCGGGGTTGTGAGGCTGATGCCAATCGCCGGGCTCTTCCTGCATGTTACACTgg                 <  2:1986778/100‑1 (MQ=255)
                                                                                tttGCTTTCTCCTGTAGTG‑TTTCTGTAGGTTCTGAACCGGTTCTAGCGGGGTTGTGAGGCTGATGGCAATCGCCGGGCTCTTCCTGCATGTTACACTgg                 >  2:1148354/1‑99 (MQ=255)
                                                                                tttGCTTTCTCCTGTAGTG‑TTTCTGTAGGTTCTGAACCGGTTCTAGCGGGGTTGTGAGGCTGATGGCAATCGCCGGGCTCTTCCTGCATGTTACACTGGt                <  2:1981596/100‑1 (MQ=255)
                                                                                tttGCTTTCTCCTGTAGTG‑TTTCTGTAGGTTCTGAACCGGTTCTAGCGGGGTTGTGAGGCTGATGGCAATCGCCGGGCTCTTCCTGCATGTTACACTGGt                <  1:1408045/100‑1 (MQ=255)
                                                                                   gCTTTCTCCTGTAGTG‑TTTCTGTAGGTTCTGAACCGGTTCTAGCGGGGTTGTGAGGCTGATGGCAATCGCCGGGCTCTTCCTGCATGTTACACTGGTACt             >  1:1528981/1‑100 (MQ=255)
                                                                                   gCTTTCTCCTGTAGTG‑TTTCTGTAGGTTCTGAACCGGTTCTAGCGGGGTTGTGAGGCTGATGGCAATCGCCGGGCTCTTCCTGCATGTTACACTGGTACt             >  1:2357566/1‑100 (MQ=255)
                                                                                    cTTTCTCCTGTAGTG‑TTTCTGTAGGTTCTGAACCTGTTCTAGCGGGGTTGTGAGGCTGATGGCAATCGCCGGGCTCTTCCTGCATGTTGCACCGGTACTg            <  2:1584261/100‑1 (MQ=255)
                                                                                    cTTTCTCCTGTAGTG‑TTTCTGTAGGTTCTGAACCGGTTCTAGCGGGGTTGTGAGGCTGATGGCAATCGCCGGGCTCTTCCTGCATGTTACACTGGTACTg            <  1:1068896/100‑1 (MQ=255)
                                                                                    cTTTCTCCTGTAGTG‑TTTCTGTAGGTTCTGAACCGGTTCTAGCGAGGTTGTGAGGCTGATGGCAATCGCCGGGCTCTTCCTGCATGTTACACTGGTACTg            >  1:1074651/1‑100 (MQ=255)
                                                                                    cTTTCTCCTGTAGTG‑TTTCTGTAGGTTCTCAACCGGTTCTAGCGTGGTTGTGAGGCTGATGGCAATCGCCGGGCTCTTCCTGCATGTTACACTGGTACTg            <  2:1097844/100‑1 (MQ=255)
                                                                                     tttCTCCTGTAGTG‑TTTCTGTAGGTTCTGAACCGGTTCTAGCGGGGTTGTGAGGCTGATGGCAATCGCCGGGCTCTTCCTGCATGTTACACTGGTACTGc           <  2:2914520/100‑1 (MQ=255)
                                                                                      ttCTCCTGTAGTG‑TTTCTGTAGGTTCTGAACCGGTTCTAGCGGGGTTGTGAGGCTGATGGCAATCGCCGGGCTCTTCCTGCATGTTACACTGGTACTGc           >  2:1151358/1‑99 (MQ=255)
                                                                                      ttCTCCTGTAGTG‑TTTCTGTAGGTTCTGAACCGGTTCTAGCGGGGTTGTGAGGCTGATGGCAATCGCCGGGCTCTTCCTGCATGTTACACTGGTACTGCa          >  2:548841/1‑100 (MQ=255)
                                                                                          ccTGTAGTG‑TTTCTGTAGGTTCTGAACCGGTTCTAGCGGGGTTGTGAGGCTGATGGCAATCGCCGGGCTCTTCCTGCATGTTACACTGGTACTGCAagag      >  2:180800/1‑100 (MQ=255)
                                                                                          ccTGTAGTG‑TTTCTGTAGGTTCTGAACCGGTTCTAGCGGGGTTGTGAGGCTGATGGCAATCGCCGGGCTCTTCCTGCATGTTACACTGGTACTGCAaga       >  2:1267589/1‑99 (MQ=255)
                                                                                           cTGTAGTG‑TTTCTGTAGGTTCTGAACCGGTTCTAGCGGGGTTGTGAGGCTGATGGCAATCGCCGGGCTCTTCCTGCATGTTACACTGGTACTGCAAGAgg     >  1:323528/1‑100 (MQ=255)
                                                                                           cTGTAGTG‑TTTCTGTAGGTTCTGAACCGGTTCTAGCGGGGTTGTGAGGCTGATGGCAATCGCCGGGCTCTTCCTGCATGTTACACTGGTACTGCAAGAgg     >  2:2478287/1‑100 (MQ=255)
                                                                                            tGTAGTG‑TTTCTGTAGGTTCTGAACCGGTTCTAGCGGGGTTGTGAGGCTGATGGCAATCGCCGGGCTCTTCCTGCATGTTACACTGGTACTGCAAGAggg    <  2:907929/100‑1 (MQ=255)
                                                                                            tGTAGTG‑TTTCTGTAGGTTCTGAACCGGTTCTAGCGGGGTTGTGAGGCTGATGGCAATCGCCGGGCTCTTCCTGCATGTTACACTGGTACTGCAAGAggg    <  1:2579129/100‑1 (MQ=255)
                                                                                            tGTAGTG‑TTTCTGTAGGTTCTGAACCGGTTCTAGCGGGGTTGTGAGGCTGATGGCAATCGCCGGGCTCTTCCTGCATGTTACACTGGTACTGCAAGAggg    <  2:621442/100‑1 (MQ=255)
                                                                                            tGTAGTG‑TTTATGTAGGTTCTGAACCGGTTCTAGCGGGGTTGTGAGGCTGATGGCAATCGCCGGGCGCTGCCTGCATGTTACACTGGTACTGCAAGAggn    <  2:1992515/100‑2 (MQ=255)
                                                                                             gTAGTG‑TTTCTGTAGGTTCTGAACCGGTTCTAGCGGGGTTGTTTTGCTGATGGCAATCGCCGGGCTCTTCCTGCATGTTACACTGGTACTGCAAGAggg    <  2:908641/99‑1 (MQ=255)
                                                                                             gTAGTG‑TTTCTGTAGGTTCTGAACCGGTTCTAGCGGGGTTGTGAGGCTGATGGCAATCGCCGGGCTCTTCCTGCATGTTACACTGGTACTGCAAGAgggg   >  1:1651234/1‑100 (MQ=255)
                                                                                              tAGTG‑TTTCTGTAGGTTCTGAACCGGTTCTAGCGGGGTTGTGAGGCTGATGGCAATCGCCGGGCTCTTCCTGCATGTTACACTGGTACTGCAAGAggggg  <  1:2179983/100‑1 (MQ=255)
                                                                                                   |                                                                                               
GTCCGCCAGAAAATCACCACGAATACCAGAATCGCGGCACTGACCAGAAAATGATAAACAGGAAACACGGGGCGGTTCACTTTGCTTTCTCCTGTAGTGTTTTCTGTAGGTTCTGAACCGGTTCTAGCGGGGTTGTGAGGCTGATGGCAATCGCCGGGCTCTTCCTGCATGTTACACTGGTACTGCAAGAGGGGG  >  NC_000913/4500712‑4500906

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A