Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A12 F204 I0 R1
|
247 |
174.3 |
8556966 |
94.2% |
8060661 |
99.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
4,490,055 |
T→G |
100% |
E3D (GAA→GAC) |
yjgR ← |
DUF853 family protein with NTPase fold |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 4,490,055 | 0 | T | G | 96.2%
| 568.4
/ 6.6
| 165 | E3D (GAA→GAC) | yjgR | DUF853 family protein with NTPase fold |
| Reads supporting (aligned to +/- strand): ref base T (2/5); new base G (76/82); total (78/87) |
| Fisher's exact test for biased strand distribution p-value = 4.48e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 165 total aligned reads displayed.
TACCCGTCCCCGTTGCGCCGGTAATCAGCCCATGACGGTTAGCCATTCCCGGCAGTAAAAACAGTTCTGTGTCCGGCGTGCGGGCAATTAACAGGGGTTCACTCATGAGATATCCTCCAGTTTCCTGCCTGGAGTATAGGCAACGTCCGGCAAAGAGAATACGTGTAATGAAGAGAAAATAACCTAAAGCGTG > NC_000913/4489958‑4490150
|
aCCCGTCCCCGTTGCGCCGGTAATCAGCCCATGACGGTTAGCCATTCCCGGCAGTAAAAACAGTTCTGTGTCCGGCGTGCGGGCAATTAACAGGGGGTCa > 2:400368/1‑100 (MQ=255)
cccGTCCCCGTTGCGCCGGTAATCAGCCCATGACGGTTAGCCATTCCCGGCAGTAAAAACAGTTCTGTGTCCGGCGTGCGGGCAATTAACAGGGGGTCAc < 1:1154849/100‑1 (MQ=255)
cccGTCCCCGTTGCGCCGGTAATCAGCCCATGACGGTTAGCCATTCCCGGCAGTAAAAACAGTTCTGTGTCCGGCGTGCGGGCAATTAACAGGGGGTCAc < 1:1016921/100‑1 (MQ=255)
ccGTCCCCGTTGCGCCGGTAATCAGCCCATGACGGTTAGCCATTCCCGGCAGTAAAAACAGTTCTGTGTCCGGCGTGCGGGCAATTAACAGGGGGTCACt > 2:2252707/1‑100 (MQ=255)
ccccGTTGCGCCGGTAATCAGCCCATGACGGTTAGCCATTCCCGGCAGTAAAAACAGTTCTGTGTCCGGCGTGCGGGCAATTAACAGGGGGTCACTCATg < 2:2439021/100‑1 (MQ=255)
ccccGTTGCGCCGGTAATCAGCCCATGACGGTTAGCCATTCCCGGCAGTAAAAACAGTTCTGTGTCCGGCGTGCGGGCAATTAACAGGGGGTCACTCATg > 2:1870686/1‑100 (MQ=255)
cccGTTGCGCCGGTAATCAGCCCATGACGGTTAGCCATTCCCGGCAGTAAAAACAGTTCTGTGTCCGGCGTGCGGGCAATTAACAGGGGGTCACTCATga < 1:2441491/100‑1 (MQ=255)
cccGTTGCGCCGGTAATCAGCCCATGACGGTTAGCCATTCCCGGCAGTAAAAACAGTTCTGTGTCCGGCGTGCGGGCAATTAACAGGGGGTCACTCATga < 1:3750752/100‑1 (MQ=255)
cccGTTGCGCCGGTAATCAGCCCATGACGGTTAGCCATTCCCGGCAGTAAAAACAGTTCTGTGTCCGGCGTGCGGGCAATTAACAGGGGGTCACTCATga < 1:1187241/100‑1 (MQ=255)
ccGTTGCGCCGGTAATCAGCCCATGACGGTTAGCCATTCCCGGCAGTAAAAACAGTTCTGTGTCCGGCGTGCGGGCAATTAACAGGGGGTCACTCATgag > 1:172549/1‑100 (MQ=255)
ccGTTGCGCCGGTAATCAGCCCATGACGGTTAGCCATTCCCGGCAGTAAAAACAGTTCTGTGTCCGGCGTGCGGGCAATTAACAGGGGGTCACTCATgag < 1:4174903/100‑1 (MQ=255)
ccGTTGCGCCGGTAATCAGCCCATGACGGTTAGCCATTCCCGGCAGTAAAAACAGTTCTGTGTCCGGCGTGCGGGCAATTAACAGGGGGTCACTCATgag < 2:1011081/100‑1 (MQ=255)
cGTTGCGCCGGTAATCAGCCCATGACGGTTAGCCATTCCCGGCAGTAAAAACAGTTCTGTGTCCGGCGTGCGGGCAATTAACAGGGGTTCACTCATgaga < 2:4074875/100‑1 (MQ=255)
ttGCGCCGGTAATCAGCCCATGACGGTTAGCCATTCCCGGCAGTAAAAACAGTTCTGTGTCCGGCGTGCGGGCAATTAACAGGGGGTCACTCATGAGata < 2:3654063/100‑1 (MQ=255)
ttGCGCCGGTAATCAGCCCATGACGGTTAGCCATTCCCGGCAGTAAAAACAGTTCTGTGTCCGGCGTGCGGGCAATTAACAGGGGGTCACTCATGAGata < 1:320724/100‑1 (MQ=255)
tGCGCCGGTAATCAGCCCATGACGGTTAGCCATTCCCGGCAGTAAAAACAGTTCTGTGTCCGGCGTGCGGGCAATTAACAGGGGGTCACTCATGAGatat > 2:4172105/1‑100 (MQ=255)
gcgcCGGTAATCAGCCCATGACGGTTAGCCATTCCCGGCAGTAAAAACAGTTCTGTGTCCGGCGTGCGGGCAATTAACAGGGGGTCACTCATGAGATAtc > 1:444147/1‑100 (MQ=255)
cgcCGGTAATCAGCCCATGACGGTTAGCCATTCCCGGCAGTAAAAACAGTTCTGTGTCCGGCGTGCGGGCAATTAACAGGGGGTCACTCATGAGATAtcc > 1:3097554/1‑100 (MQ=255)
cgcCGGTAATCAGCCCATGACGGTTAGCCATTCCCGGCAGTAAAAACAGTTCTGTGTCCGGCGTGCGGGCAATTAACAGGGGGTCACTCATGAGATAtcc < 2:2508743/100‑1 (MQ=255)
cgcCGGTAATCAGCCCATGACGGTTAGCCATTCCCGGCAGTAAAAACAGTTCTGTGTCCGGCGTGCGGGCAATTAACAGGGGGTCACTCATGAGATAtcc > 2:15543/1‑100 (MQ=255)
gcCGGTAATCAGCCCATGACGGTTAGCCATTCCCGGCAGTAAAAACAGTTCTGTGTCCGGCGTGCGGGCAATTAACAGGGGGTCACTCATGAGATAtcct > 2:1720341/1‑100 (MQ=255)
cGGTAATCAGCCCATGACGGTTAGCCATTCCCGGCAGTAAAAACAGTTCTGTGTCCGGCGTGCGGGCAATTAACAGGGGGTCACTCATGAGATAtcctcc < 1:1468267/100‑1 (MQ=255)
gTAATCAGCCCATGACGGTTAGCCATTCCCGGCAGTAAAAACAGTTCTGTGTCCGGCGTGCGGGCAATTAACAGGGGGTCACTCATGAGATATCCTCCAg < 1:1706603/100‑1 (MQ=255)
tAATCAGCCCATGACGGTTAGCCATTCCCGGCAGTAAAAACAGTTCTGTGTCCGGCGTGCGGGCAATTAACAGGGGGTCACTCATGAGATATCCTCCAGt > 2:1447836/1‑100 (MQ=255)
aaTCAGCCCATGACGGTTAGCCATTCCCGGCAGTAAAAACAGTTCTGTGTCCGGCGTGCGGGCAATTAACAGGGGGTCACTCATGAGATATCCTCCAGtt > 2:792222/1‑100 (MQ=255)
tCAGCCCATGACGGTTAGCCATTCCCGGCAGTAAAAACAGTTCTGTGTCCGGCGTGCGGGCAATTAACAGGGGGTCACTCATGAGATATCCTCCAGTTTc > 1:634999/1‑100 (MQ=255)
tCAGCCCATGACGGTTAGCCATTCCCGGCAGTAAAAACAGTTCTGTGTCCGGCGTGCGGGCAATTAACAGGGGGTCACTCACGAGATATCCTCCAGTTTc < 1:4005105/100‑1 (MQ=255)
cAGCCCATGACGGTTAGCCATTCCCGGCAGTAAAAACAGTTCTGTGTCCGGCGTGCGGGCAATTAACAGGGGGTCACTCATGAGATATCCTCCAGTTTcc < 2:2613836/100‑1 (MQ=255)
cAGCCCATGACGGTTAGCCATTCCCGGCAGTAAAAACAGTTCTGTGTCCGGCGTGCGGGCAATTAACAGGGGGTCACTCATGAGATATCCTCCAGTTTcc < 1:3967677/100‑1 (MQ=255)
cAGCCCATGACGGTTAGCCATTCCCGGCAGTAAAAACAGTTCTGTGTCCGGCGTGCGGGCAATTAACAGGGGGTCACTCATGAGATATCCTCCAGTTTcc < 2:3065153/100‑1 (MQ=255)
cAGCCCATGACGGTTAGCCATTCCCGGCAGTAAAAACAGTTCTCTGTCCGGCGTGCGGGCAATTAACAGGGGGTCACTCATGAGATATCCTCCAGTTTcc < 1:2734045/100‑1 (MQ=255)
aGCCCATGACGGTTAGCCATTCCCGGCAGTAAAAACAGTTCTGTGTCCGGCGTGCGGGCAATTAACAGGGGGTCACTCATGAGATATCCTCCAGTTTcct > 2:2159588/1‑100 (MQ=255)
aGCCCATGACGGTTAGCCATTCCCGGCAGTAAAAACAGTTCTGTGTCCGGCGTGCGGGCAATTAACAGGGGGTCACTCATGAGATATCCTCCAGTTTcct < 1:3286784/100‑1 (MQ=255)
aTGACGGTTAGCCATTCCCGGCAGTAAAAACAGTTCTGTGTCCGGCGTGCGGGCAATTAACAGGGGGTCACTCATGAGATATCCTCCAGTTTcctgcctg < 2:3271590/100‑1 (MQ=255)
ggtcgggaGCCATGGCCGGCAGGAAAAGCAGGGGTGGTGCGGGCGTGCGGGGAATGAAGAGGGGGTCACGCATGAGATATCCTCCAGTTTcctgcc < 1:4075239/89‑1 (MQ=255)
aCGGTTAGCCATTCCCGGCAGTAAAAACAGTTCTGTGTCCGGCGTGCGGGCAATTAACAGGGGGTCACTCATGAGATATCCTCCAGTTTCCTGCCTGGAg < 2:927530/100‑1 (MQ=255)
aCGGTTAGCCATTCCCGGCAGTAAAAACAGTTCTGTGTCCGGCCTGCGGGCAATTAACAGGGGGTCACTCATGAGATCTACTCCAGTTTCCTGCCTGGAg < 1:2489829/100‑1 (MQ=255)
cGGTTAGCCATTCCCGGTAGTAAAAACAGTGCTGTGTCCGGCGTGCGGGCCATTAACAGGGGGTCACTCATGAGATATCCTCCAGTTTCCTGCCTGGAGt < 1:2747478/100‑1 (MQ=255)
cGGTTAGCCATTCCCGGCAGTAAAAACAGTTCTGTGTCCGGCGTGCGGGCAATTAACAGGGGGTCACTCATGAGATATTCTCCAGTTTCCTGCCTGGAGt < 1:3049680/100‑1 (MQ=255)
ttAGCCATTCCCGGCAGTAAAAACAGTTCTGTGTCCGGCGTGCGGCCAATTAACAGGGGGTCACTCATGAGATATCCTCCAGTTTCCTGCCTGGAGtata > 1:2602388/1‑100 (MQ=255)
gCCATTCCCGGCAGTAAAAACAGTTCTGTGTCCGGCGTGCGGGCAATTAACAGGGGGTCACTCATGAGATATCCTCCAGTTTCCTGCCTGGAGTATAGGc > 2:1831985/1‑100 (MQ=255)
gCCATTCCCGGCAGTAAAAACAGTTCTGGGTCCGGCGTGCGGGCAATTAACAGGGGGTCACTCATGAGATATCCTCCAGTTTCCTGCCTGGAGTATAGGc < 1:250112/100‑1 (MQ=255)
cATTCCCGGCAGTAAAAACAGTTCTGTGTCCGGCGTGCGGGCAATTCACAGGGGGTCACTCATGAGATATCCTCCAGTTTCCTGCCTGGAGTATAGGCa < 1:2143893/99‑1 (MQ=255)
aTTCCCGGCAGTAAAAACAGTTCTGTGTCCGGCGTGCGGGCAATTAACAGGGGGTCACTCATGAGATATCCTCCAGTTTCCTGCCTGGAGTATAGGCAAc > 2:1034930/1‑100 (MQ=255)
ttCCCGGCAGTAAAAACAGTTCTGTGTCCGGCGTGCGGGCAATTAACAGGGGGTCACTCATGAGATATCCTCCAGTTTCCTGCCTGGAGTATAGGCAACg < 2:749385/100‑1 (MQ=255)
cccGGCAGTAAAAACAGTTCTGTGTCCGGCGTGCGGGCAATTAACAGGGGTTCACTCATGAGATATCCTCCAGTTTCCTGCCTGGAGTATAGGCAACGTc > 1:116858/1‑100 (MQ=255)
cccGGCAGTAAAAACAGTTCTGTGTCCGGCGTGCGGGCAATTAACAGGGGGTCACTCATGAGATATCCTCCAGTTTCCTGCCTGGAGTATAGGCAACGt > 1:3684963/1‑99 (MQ=255)
cccGGCAGTAAAAACAGTTCTGTGTCCGGCGTGCGGGCAATTAACAGGGGGTCACTCATGAGATATCCTCCAGTTTCCTGCCTGGAGTATAGGCAACGTc > 1:4103295/1‑100 (MQ=255)
cccGGCAGTAAAAACAGTTCTGTGTCCGGCGTGCGGGCAATTAACAGGGGGTCACTCATGAGATATCCTCCAGTTTCCTGCCTGGAGTATAGGCAACGTc > 1:158240/1‑100 (MQ=255)
cccGGCAGTAAAAACAGTTCTGTGTCCGGCGTGCGGGCAATTAACAGGGGGTCACTCATGAGATATCCTCCAGTTTCCTGCCTGGAGTATAGGCAACGTc > 1:1386377/1‑100 (MQ=255)
ggCAGTAAAAACAGTTCTGTGTCCGGCTTGCGGGCAATTAACAGGGGGTCACTCATGAGATATCCTCCAGTTTCCTGCCTGGAGTATAGGCAACGTCCgg < 1:205272/100‑1 (MQ=255)
gCAGTAAAAACAGTTCTGTGTCCGGCGTGCGGGCAATTAACAGGGGGTCACTCATGAGATATCCTCCAGTTTCCTGCCTGGAGTATAGGCAACGTCCGGc < 2:146379/100‑1 (MQ=255)
aGTAAAAACAGTTCTGTGTCCGGCGTGCGGGCAATTAACAGGGGGTCACTCATGAGATATCCTCCAGTTTCCTGCCTGGAGTATAGGCAACGTCCGGCaa < 1:3276059/100‑1 (MQ=255)
gTAAAAACAGTTCAGTGTCCGGCGTGCGGGCAATTAACAGGGGGTCACTCATGAGATATCCTCCAGTTTCCTGCCTGGAGTATAGGCAACGTCCGGCaaa > 2:2904033/1‑100 (MQ=255)
tAAAAACAGTTCTGTGTCCGGCGTGCGGGCAATTAACAGGGGGTCACTCATGAGATATCCTCCAGTTTCCTGCCTGGAGTATAGGCAACGTCCGGCAAag < 2:3708064/100‑1 (MQ=255)
aaaaaCAGTTCTGTGTCCGGCGTGCGGGCAATTAACAGGGGGTCACTCATGAGATATCCTCCAGTTTCCTGCCTGGAGTATAGGCAACGTCCGGCAAaga > 2:463468/1‑100 (MQ=255)
aaaaaCAGTTCTGTGTCCGGCGTGCGGGCAATTAACAGGGGGTCACTCATGAGATATCCTCCAGTTTCCTGCCTGGAGTATAGGCAACGTCCGGCAAaga > 2:1630302/1‑100 (MQ=255)
aaaaaCAGTTCTGTGTCCGGCGTGCGGGCAATTAACAGGGGGTCACTCATGAGATATCCTCCAGTTTCCTGCCTGGAGTATAGGCAACGTCCGGCAAaga < 1:581735/100‑1 (MQ=255)
aaaaaCAGTTCTGTGTCCGGCGTGCGGGCAATTAACAGGCGGTCACTCATGAGATATCCTCCAGTTTCCTGCCTGGAGTATAGGCAACGTCCGGCAAaga < 1:437791/100‑1 (MQ=255)
aaaaCAGTTCTGTGTCCGGCGTGCGGGCAATTAACAGGGGGTCACTCATGAGATATCCTCCATTTTCTTACTTGG‑GGATAAGCCACGTTCGGCgaa > 1:2304221/1‑96 (MQ=255)
aaaaCAGTTCTGTGTCCGGCGTGCGGGCAATTAACAGGGGGTCACTCATGAGATATCCTCCAGTTTCCTGCCTGGAGTATAGGCAACGTCCGGCAAagag < 2:3008581/100‑1 (MQ=255)
tccgatctCTGTGTCCGGCGTGCGGGCAATTAACAGGGGGTCACTCATGAGATATCCTCCAGTTTCCTGCCTGGAGTATAGGCAACGTCCGGCAAAgaga < 2:1994266/93‑1 (MQ=255)
aaaCAGTTCTGTGTCCGGCGTGCGGGCAATTAGCAGGGGGTCACTCATGAGATATCCTCCAGTTTCCTGCCTGGAGTATAGGCAACGTCCGGCAAAgaga > 2:4054371/1‑100 (MQ=255)
aaaCAGTTCTGTGTCCGGCGTGCGGGCAATTAACAGGGGGTCACTCATGAGATATCCTCCAGTTTCCTGCCTGGAGTATAGGCAACGTCCGGCAAAgaga > 2:3114405/1‑100 (MQ=255)
aaCAGTTCTGTGTCCGGCGTGCGGGCAATTAACAGGGGGTCACTCATGAGATATCCTCCAGTTTCCTGCCTGGAGTATAGGCAACGTCCGGCAAAGAGaa > 2:2989608/1‑100 (MQ=255)
aaCAGTTCTGTGTCCGGCGTGCGGGCAATGAACAGGGGGTCACTCATGAGATATCCTCCAGTTTCCTGCCTGGAGTATAGGCAACGTCCGGCAAAGAGaa < 2:4159963/100‑1 (MQ=255)
cAGTTCTGTGTCCGGCGTGCGGGCAATTAACAGGGGTTCACTCATGAGATATCCTCCAGTTTCCTGCCTGGAGTATAGGCAACGTCCGGCAAAGAGAATa < 2:116858/100‑1 (MQ=255)
gTTCTGTGTCTGGCGTGCGGGCAATTACCAGGGGGTTACGCATGAGGTATAAGCCGGTTTCCTGGGCGGAGAATAGGCAACGTGCGGCGAAGCGAAt > 1:2366864/1‑97 (MQ=255)
gTTCTGTGTCCGGCGTGCGGGCAATTAACAGGGGGTCACTCATGAGATATCCTCCAGTTTCCTGCCTGGAGTATAGGCAACGTCCGGCAAAGAGAATACg > 2:1609108/1‑100 (MQ=255)
gTTCTGTGTCCGGCGTGCGGGCAATTAACAGGGGGTCACGCAGGAGATATCCTCCAGTTTCCTGCCTGGAGTATAGGGAAAGTCCGGCAAAGAGAATagg > 1:1085084/1‑98 (MQ=255)
ttCTGTGTCCGGCGTGCGGGCAATTAACAGGGGGTCACTCATGAGATATCCTCCAGTTTCCTGCCTGGAGTATAGGCAACGTCCGGCAAAGAGAATACgt < 2:1323065/100‑1 (MQ=255)
tCTGTGTCCGGCGTGCGGGCAATTAACAGGGGGTTACTCATGAGATATCCTACAGTTTCCTGCATGGCGTATAGGCAACGTCCGGCAAAGAGAATACgtg < 1:3840894/100‑1 (MQ=255)
tCTGTGTCCGGCGTGCGGGCAATTAACAGGGGGTCACTCATGAGATATCCTCCAGTTTCCTGCCTGGAGTATAGGCAACGTCCGGCAAAGAGAATACgtg < 2:2380507/100‑1 (MQ=255)
tCTGTGTCCGGCGTGCGGGCAATTAACAGGGGGTCACTCATGAGATATCCTCCAGTTTCCTGCCTGGAGTATAGGCAACGTCCGGCAAAGAGAATACgtg < 2:557230/100‑1 (MQ=255)
tCTGTGTCCGGCGTGCGGGCAATTAACAGGGGGTCACTCATGAGATATCCTCCAGTTTCCTGCCTGGAGTATAGGCAACGTCCGGAAAAGAGAATACgt > 1:1017750/1‑99 (MQ=255)
cTGTGTCCGGCGTGCGGGCAATTAACAGGGGGTCACTCATGAGATATCCTCCAGTTTCCTGCCTGGAGTATAGGCAACGTCCGGCAAAGAGaagatcgga > 1:1994262/1‑93 (MQ=255)
cTGTGTCCGGCGTGCGGGCAATTAACAGGGGGTCACTCATGAGATATCCTCCAGTTTCCTGCCTGGAGTATAGGCAACGTCCGGCAAAGAGAATACgtgt < 2:1136849/100‑1 (MQ=255)
gtCCGGCGTGCGGGCAATTAACAGGGGGTCACTCATGAGATATCCTCCAGTTTCCTGCCTGGAGTATAGGCAACGTCCGGCAAAGAGAATACGTGTAATg > 2:817856/1‑100 (MQ=255)
ggCGTGCGGGCAATTAACAGGGGGTCACTCATGAGATATCCTCCAGTTTCCTGCCTGGAGTATAGGCAACGTCCGGCAAAGAGAATACGTGTAATGAaga < 1:1074781/100‑1 (MQ=255)
ggCGTGCGGGCAATTAACAGGGGGTCACTCATGAGATATCCTCCAGTTTCCTGCCTGGAGTATAGGCAACGTCCGGCAAAGAGAATACGTGTAATGAaga > 1:1749064/1‑100 (MQ=255)
cGTGCGGGCAATTAACAGGGGGTCACTCATGAGATATCCTCCAGTTTCCTGCCTGGAGTATAGGCAACGTCCGGCAAAGAGAATACGTGTAATGAAgaga < 1:4054351/100‑1 (MQ=255)
gTGCGGGCAATTAACAGGGGGTCACTCATGAGATATCCTCCAGTTTCCTGCCTGGAGTATAGGCAACGTCCGGCAAAGAGAATACGTGTAATGAAGAGaa < 2:2742218/100‑1 (MQ=255)
tGCGGGCAATTAACAGGGGGTCACTCATGAGATATCCTCCAGTTTCCTGCCTGGAGTATAGGCAACGTCCGGCAAAGAGAATACGTGTAATGAAGAGaaa < 2:623702/100‑1 (MQ=255)
tGCGGGCAATTAACAGGGGGTCACTCATGAGATATCCTCCAGTTTCCTGCCTGGAGTATAGGCAACGTCCGGCAAAGAGAATACGTGTAATGAAGAGaaa > 1:1851263/1‑100 (MQ=255)
ggCAATTAACAGGGGGTCACTCATGAGATATCCTCCAGTTTCCTGCCTGGAGTATAGGCAACGTCCGGCAAAGAGAATACGTGTAATGAAGAGAAAATaa > 1:1831160/1‑100 (MQ=255)
ggCAATTAACAGGGGGTCACTCATGAGATATCCTCCAGTTTCCTGCCTGGAGTATAGGCAACGTCCGGCAAAGAGAATACGTGTAATGAAGAGAAAATaa > 1:3579631/1‑100 (MQ=255)
ggCAATTAACAGGGGGCCCCTCATGAGATATCCTCCAGTTACCTGCCGGGAGTCTAGGCAACGTCCGGCAAAGCGAATACGAGTAATGAAGAGAAAATa > 1:3871872/1‑99 (MQ=255)
cAATTAACAGGGGTTCACTCATGAGATATCCTCCAGTTTCCTGCCTGGAGTATAGGCAACGTCCGGCAAAGAGAATACGTGTAATGAAGAGAAAATAAcc < 2:3811064/100‑1 (MQ=255)
cAATTAACAGGGGGTCACTCATGAGATATCCTCCAGTTTCCTGCCTGGAGTATAGGCAACGTCCGGCAAAGAGAATACGTGTAATGAAGAGAAAATAAcc > 2:3299770/1‑100 (MQ=255)
cAATTAACAGGGGGTCACTCATGAGATATCCTCCAGTTTCCTGCCTGGAGTATAGGCAACGTCCGGCAAAGAGAATACGTGTAATGAAGAGAAAATAAcc < 2:2958673/100‑1 (MQ=255)
cAATTAACAGGGGGTCACTCATGAGATATCCTCCAGTTTCCTGCCTGGAGTATAGGCAACGTCCGGCAAAGAGAATACGTGTAATGAAGAGAAAATAAcc > 1:2382763/1‑100 (MQ=255)
cAATTAACAGGGGGTCACTCATGAGATATCCTCCAGTTTCCTGCCTGGAGTATAGGCAACGTCCGGCAAAGAGAATACGTGTAATGAAGAGAAAATAAcc < 2:3767565/100‑1 (MQ=255)
aTTAACAGGGGGTCACTCATGAGATATCCTCCAGTTTCCTGCCTGGAGTATAGGCAACGTCCGGCAAAGAGAATACGTGTAATGAAGAGAAAATAACCTa > 1:1359101/1‑100 (MQ=255)
aTTAACAGGGGGTCACTCATGAGATATCCTCCAGTTTCCTGCCTGGAGTATAGGCAACGTCCGGCAAAGAGAATACGTGTAATGAAGAGAAAATAACCTa > 1:348977/1‑100 (MQ=255)
ttAACAGGGGGTCACTCATGAGATATCCTCCAGTTTCCTGCCTGGAGTATAGGCAACGTCCGGCAAAGAGAATACGTGTAATGAAGAGAAAATAACCTaa > 2:751148/1‑100 (MQ=255)
ttAACAGGGGGTCACTCATGAGATATCCTCCAGTTTCCTGCCTGGAGTATAGGCAACGTCCGGCAAAGAGAATACGTGTAATGAAGAGAAAATAACCTaa > 1:296070/1‑100 (MQ=255)
ttAACAGGGGGTCACTCATGAGATATCCTCCAGTCTCCTGCCTGGAGTATAGGCAACGTCCGGCAAAGAGCATACGTGTAATGAAGAGAAAATACCCTaa > 2:355334/1‑100 (MQ=255)
aCAGGGGGTCACTCATGAGATATCCTCCAGTTTCCTGGCTGGAGTATAGGCAACGTCCGGCAAAGAGAATACGTGTAATGAAGAGAAAATAACCTAAAGc > 1:2285481/1‑100 (MQ=255)
cAGGGGGTCACTCATGAGATATCCTCCAGTTTCCTGCCTGGAGTATAGGCAACGTCCGGCAAAGAGAATACGTGTAATGAAGAGAAAATAACCTAAAGCg > 1:1892244/1‑100 (MQ=255)
ggggGTCACTCATGAGATATCCTCCAGTTTCCTGCCTGGAGTATAGGCAACGTCCGGCAAAGAGAATACGTGTAATGAAGAGAAAATAACCTAAAGCgtg < 2:3214312/100‑1 (MQ=255)
|
TACCCGTCCCCGTTGCGCCGGTAATCAGCCCATGACGGTTAGCCATTCCCGGCAGTAAAAACAGTTCTGTGTCCGGCGTGCGGGCAATTAACAGGGGTTCACTCATGAGATATCCTCCAGTTTCCTGCCTGGAGTATAGGCAACGTCCGGCAAAGAGAATACGTGTAATGAAGAGAAAATAACCTAAAGCGTG > NC_000913/4489958‑4490150
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
