Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A12 F56 I0 R1	312	170.3	8276235	93.7%	7754832	99.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	NC_000913	2,420,727	G→A	23.4%	G36D (GGC→GAC)	yfcG →	GSH‑dependent disulfide bond oxidoreductase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,420,727	0	G	A	23.4%	288.2 / 83.3	157	G36D (GGC→GAC)	yfcG	GSH‑dependent disulfide bond oxidoreductase
Reads supporting (aligned to +/- strand): ref base G (58/62); new base A (21/16); total (79/78)
Fisher's exact test for biased strand distribution p-value = 4.53e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.96e-01

Only 100 of 160 total aligned reads displayed.

ATCTCTATTTCGCCCCGACACCCAATGGTCACAAAATTACGCTGTTTCTCGAAGAAGCAGAGCTGGATTATCGCTTGATTAAGGTAGACCTGGGGAAAGGCGGTCAGTTTCGTCCGGAATTTTTGCGCATTTCGCCCAACAACAAAATTCCGGCAATTGTTGATCATTCTCCTGCCGATGGCGGCGAACCGCTAAGCC  >  NC_000913/2420628‑2420825

 tctcTATTTCGCCCCGACACCCAATGGTCACAAAATTACGCTGTTTCTCGAAGAAGCAGAGCTGGATTATCGCTTGATTAAGGTAGACCTGGGGAAAGGc                                                                                                   <  2:1229803/100‑1 (MQ=255)

  ctctATTTCGCCCCGACACCCAATGGTCACAAAATTACGCTGTTTCTCGAAGAAGCAGAGCTGGATTATCGCTTGATTAAGGTAGACCTGGGGAAAGGCg                                                                                                  >  1:2295997/1‑100 (MQ=255)

   tctATTTCGCCCCGACACCCAATGGTCACAAAATTACGCTGTTTCTCGAAGAAGCAGAGCTGGATTATCGCTTGATTAAGGTAGACCTGGGGAAAGGCgg                                                                                                 >  1:486907/1‑100 (MQ=255)

   tctATTTCGCCCCGACACCCAATGGTCACAAAATTACGCTGTTTCTCGAAGAAGCAGAGCTGGATTATCGCTTGATTAAGGTAGACCTGGGGAAAGGCgg                                                                                                 <  2:1269341/100‑1 (MQ=255)

   tctATTTCGCCCCGACACCCAATGGTCACAAAATTACGCTGTTTCTCGAAGAAGCAGAGCTGGATTATCGCTTGATTAAGGTAGACCTGGGGAAAGGCgg                                                                                                 <  1:4007473/100‑1 (MQ=255)

    ctATTTCGCCACGACACCCAGTGGTCAAATAATTACGCTGTTTCTCGAAGAAACAAAGATGGATTATGGCGTGATTAACGTAGACGTGGGGAAAGGc                                                                                                   >  2:2024978/1‑97 (MQ=255)

    ctATTTCGCACAGCCACGCAATGGTCACAAAATTACGCTGTTTCTCGAAGACGCAGAGCTGAACTAGCGCTTGATTAAGGTAGACCTGGGGAAAGACGGt                                                                                                <  2:2829435/100‑1 (MQ=255)

       tttCGCCCCGACACCCAATGGTCACAAAATTACGCTGTTTCTCGAAGAAGCAGAGCTGGATTATCGCTTGATTAAGGTAGACCTGGGGAAAGGCGGTCAg                                                                                             >  1:3898998/1‑100 (MQ=255)

       tttCGCCCCGACACCCAATGGTCACAAAATTACGCTGTTTCTCGAAGAAGCAGAGCTGGATTATCGCTTGATTAAGGTAGACCTGGGGAAAGACGGTCAg                                                                                             >  2:489338/1‑100 (MQ=255)

       tttCGCCCCGACACCCAATGGTCACAAAATTACGCTGTTTCTCGAAGAAGCAGAGCTGGATTATCGCTGGATTAAGGTAGACCTGGGGAAAGACGGTCAg                                                                                             >  1:2262806/1‑100 (MQ=255)

        ttCGCCCCGACACCCAATGGTCACAAAATTACGCTGTTTCTCGAAGAAGCAGAGCTGGATTATCGCTTGATTAAGGTAGACCTGGGGAAAGGCGGTCAGt                                                                                            >  2:2415246/1‑100 (MQ=255)

         tCGCCCCGACACCCAATGGTCACAAAATTACGCTGTTTCTCGAAGAAGCAGAGCTGGATTATCGCTTGATTAAGGTAGACCTGGGGAAAGGCGGTCAGtt                                                                                           >  1:117920/1‑100 (MQ=255)

           gCCCCGACACCCAATGGTCACAAAATTACGCTGTTTCTCGAAGAAGCAGAGCTGGATTATCGCTTGATTAAGGTAGACCTGGGGAAAGGCGGTCAGTTTc                                                                                         >  1:2745441/1‑100 (MQ=255)

           gCCCCGACACCCAATGGTCACAAAATTACGCTGTTTCTCGAAGAAGCAGAGCTGGATTATCGCTTGATTAAGGTAGACCTGGGGAAAGGCGGTCAGTTTc                                                                                         >  2:1084465/1‑100 (MQ=255)

              ccGACACCCAATGGTCACAAAATTACGCTGTTTCTCGAAGAAGCACAGCTGGATTATCGCTTGATTAAGGTAGACCTGGGGAAAGGCGGGCAGTTTCGTc                                                                                      >  2:3877907/1‑100 (MQ=255)

               cGACACCCAATGGTCACAAAATTACGCTGTTTCTCGAAGGAGCAGAGCTGGGTGAGCGCTTGATTAAGGTAGACCTGGGGAAAGGCGGTCAGTTTCGTcc                                                                                     <  2:1969351/100‑1 (MQ=255)

                gACACTCAATGGTCACAAAATTACGCTGTTTCTCGAAGAAGCAGAGCTGGATTATCGCTTGATTAAGGTAGACCTGGGGAAAGGCGGTCAGTTTCGTc                                                                                      <  2:1331050/98‑1 (MQ=255)

                  cacCCAATGGTCACAAAATTACGCTGTTTCTCGAAGAAGCAGAGCTGGATTATCGCTTGATTAAGGTAGACCTGGGGAAAGACGGTCAGTTTCGTCCGGa                                                                                  >  1:850274/1‑100 (MQ=255)

                    cccAATGGTCACAAAATTACGCTGTTTCTCGAAGAAGCAGAGCTGGATTATCGCTTGATTAAGGTAGACCTGGGGAAAGGCGGTCAGTTTCGTCCGGAAt                                                                                >  2:3504731/1‑100 (MQ=255)

                    cccAATGGTCACAAAATTACGCTGTTTCTCGAAGAAGCAGAGCTGGATTATCGCTTGATTAAGGTAGACCTGGGGAAAGGCGGTCAGTTTCGTCCGGAAt                                                                                >  2:2278975/1‑100 (MQ=255)

                    cccAATGGTCACAAAATTACGCTGTTTCTCGAAGAAGCAGAGCTGGATTATCGCTTGATTAAGGTAGACCTGGGGAAAGGCGGTCAGTTTCGTCCGGAAt                                                                                >  1:3555582/1‑100 (MQ=255)

                         tGGTCACAAAATTACGCTGTTTCTCGAAGAAGCAGAGCTGGATTATCGCTTGATTAAGGTAGACCTGGGGAAAGGCGGTCAGTTTCGTCCGGAATTTTTg                                                                           <  2:2349629/100‑1 (MQ=255)

                         tGGTCACAAAATTACGCTGTTTCTCGAAGAAGCAGAGCTGGATTATCGCTTGATTAAGGTAGACCTGGGGAAAGACGGTCAGTTTCGTCCGGAATTTTTg                                                                           <  1:2526518/100‑1 (MQ=255)

                         ggctCACAAAATTACGCTGTGTCTCGAATAAGCCGAGCTGGATCATCGCGTGATTAAGGTATACCTGGGGGAAGGGGGTCCGTTTCGTCCGGAAtttttc                                                                           <  2:1746679/97‑2 (MQ=255)

                          ggTCACAAAATTACGCTGTTTCTCGAAGAAGCAGAGCTGGATTATCGCTTGACTAAGGTAGACCTGGGGAAAGGCGGTCAGTTTCGTCCGGAATTTTTgc                                                                          <  2:3021941/100‑1 (MQ=255)

                           gTCACAAAATTACGCTGTTTCTCGAAGAAGCAGAGCTGTATTATCGCTTGATTAAGGTTGACCTGGGGAAAGGCGGTCAGTTTCGTCCGGAATTTTTgcg                                                                         <  2:2250686/100‑1 (MQ=255)

                           gTCACAAAATTACGCTGTTTCTCGAAGAAGCAGAGCTGGATTATCGCTTGATTAAGGTAGACCTGGGGAAAGGCGGTCAGTTTCGTCCGGAATTTTTgcg                                                                         <  1:482204/100‑1 (MQ=255)

                            tCACAAAATTACGCTGTTTCTCGAAGAAGCAGAGCTGGATTATCGCTTGATTAAGGTAGACCTGGGGAAAGACGGTCAGTTTCGTCCGGAATTTTTgcgc                                                                        >  1:278743/1‑100 (MQ=255)

                             cacaAAATTACGCTGTTTCTCGAAGAAGCAGAGCTGGATTATCGCTTGATTAAGGTAGACCTGGGGAAAGGCGGTCAGTTTCGTCCGGAATTTTTg                                                                           <  2:294375/96‑1 (MQ=255)

                             cacaAAATTACGCTGTTTCTCGAAGAAGCAGAGCTGGATTATCGCTTGATTAAGGTAGACCTGGGGAAAGACGGTCAGTTTCGTCCGGAATTTTTGCGCa                                                                       >  2:1492373/1‑100 (MQ=255)

                             cacaAAATTACGCTGTTTCTCGAAGAAGCAGAGCTGGATTATCGCTTGATTAAGGTAGACCTGGGGAAAGACGGTCAGTTTCGTCCGGAATTTTTGCGCa                                                                       >  1:1995796/1‑100 (MQ=255)

                              acaAAATTACGCTGTTTCTCGAAGAAGCAGAGCTGGATTATCGCTTGATTAAGGTAGACCTGGGGAAAGGCGGTCAGTTTCGTCCGGAATTTTTGCGCAt                                                                      >  2:3362870/1‑100 (MQ=255)

                               caAAATTACGCTGTTTCTCGGAGAAGCAGAGCTGGATTATCGCTTGATTAAGGTAGACCTGGGGAAAGGCGGTCAGTTTCGTCCGGAATTTTTGCGCAtt                                                                     >  1:3055967/1‑100 (MQ=255)

                               caAAATTACGCTGTTTCTCGAAGAAGCAGAGCTGGATTATCGCTTGATTAAGGTAGACCTGGGGAAAGGCGGTCAGTTTCGTCCGGAATTTTTGCGCAtt                                                                     <  2:3222323/100‑1 (MQ=255)

                               caAAATTACGCTGTTTCTCGAAGAAGCAGAGCTGGATTATCGCTTGATTAAGGTAGACCTGGGGAAAGACGGTCAGTTTCGTCCGGAATTTTTGCGCAtt                                                                     <  2:1070018/100‑1 (MQ=255)

                               caAAATTACGCTGTTTCTCGAAGAAGCAGAGCTGGATTATCGCTTGATTAAGGTAGACCTGAGAAAAGGCGGTCAGTTTCGTCCGGAATTTTTGCGCAtt                                                                     >  2:82651/1‑100 (MQ=255)

                                   aTTACGCTGTTTCTCGAAGAAGCAGAGCTGGATTATCGCTTGATTAAGGTAGACCTGGGGAAAGGCGGTCAGTTTCGTCCGGAATTTTTGCGCATTTCGc                                                                 <  1:3400040/100‑1 (MQ=255)

                                    ttACGCTGTTTCTCGAAGAAGCAGAGCTGGATTATCGCTTGATTAAGGTAGACCTGGGGAAAGGCGGTCAGTTTCGTCCGGAATTTTTGCGCATTTCGcc                                                                <  2:1592262/100‑1 (MQ=255)

                                    ttACGCTGTTTCTCGAAGAAGCAGAGCTGGATTATCGCTTGATTAAGGTAGACCTGGGGAAAGGCGGTCAGTTTCGTCCCGAATTTTTGCGCATTTCGcc                                                                <  1:3888889/100‑1 (MQ=255)

                                       cGCTGTTTCTCGAAGAAGCAGAGCTGGATTATCGCTTGATTAAGGTAGACCTGGGGAAAGGCGGTCAGTTTCGTCCGGAATTTTTGCGCATTTCGCCcaa                                                             >  1:361667/1‑100 (MQ=255)

                                        gCTGTTTCTCGAAGAAGCAGAGCTGGATTATCGCTTGATTAAGGTAGACCTGGGGAAAGGCGGTCAGTTTCGTCCGGAATTTTTGCGCATTTCGCCcaac                                                            >  1:1075004/1‑100 (MQ=255)

                                        gCTGTTTCTCGAAGAAGCAGAGCTGGATTATCGCTTGATTAAGGTAGACCTGGGGAAAGGCGGTCAGTTTCGTCCGGAATTTTTGCGCATTTCGCCcaac                                                            <  1:182662/100‑1 (MQ=255)

                                        gCTGGTTCTCGAAGAAGCAGAGCTGGATTATCGCTTGATTAAGGTAGACCTGGGGAAAGGCGGTCAGTTTCGTCCGGAATTTTTGCGCATTTCGCCcaac                                                            <  2:1925599/100‑1 (MQ=255)

                                         cTGTTTCTCGAAGAAGCAGAGCTGGATTATCGCTTGATTAAGGTAGACCTGGGGAAAGGCGGTCAGTTTCGTCCGGAATTTTTGCGCATTTCGCCcaaca                                                           <  1:1952300/100‑1 (MQ=255)

                                            tttCTCGAAGAAGCAGAGCTGGATTATCGCTTGATTAAGGTAGACCTGGGGAAAGGCGGTCAGTTTCGTCCGGAATTTTTGCGCATTTCGCCcaacaaca                                                        <  1:535554/100‑1 (MQ=255)

                                              tctcGAAGAAGCAGAGCTGGATTATCGCTTGATTAAGGTAGACCTGGGGAAAGGCGGTCAGTTTCGTCCGGAATTTTTGCGCATTTCGCCCAACAACaaa                                                      >  1:1435964/1‑100 (MQ=255)

                                              tctcGAAGAAGCAGAGCTGGATTATCGCTTGATTAAGGTAGACCTGGGGAAAGACGGTCAGTTTCGTCCGGAATTTTTGCGCATTTCGCCCAACAACaaa                                                      >  1:3070923/1‑100 (MQ=255)

                                                tcGAAGAAGCAGAGCTGGATTATCGCTTGATTAAGGTAGACCTGGGGAAAGGCGGTCAGTTTCGTCCGGAATTTTTGCGCATTTCGCCCAACAACAAAAt                                                    >  1:344779/1‑100 (MQ=255)

                                                tcGAAGAAGCAGAGCTGGATTATCGCTTGATTAAGGTAGACCTGGGGAAAGGCGGTCAGTTTCGTCCGGAATTTTTGCGCATTTCGCCCAACAACAAAAt                                                    >  1:1241687/1‑100 (MQ=255)

                                                tcGAAGAAGCAGAGCTGGATTATCGCTTGATTAAGGTAGACCTGGGGAAAGACGGTCAGTTTCGTCCGGAATTTTTGCGCATTTCGCCCAACAACAAAAt                                                    <  2:2545956/100‑1 (MQ=255)

                                                 cGAAGAAGCAGAGCTGGATTATCGCTTGATTAAGGTAGACCTGGGGAAAGGCGGTCAGTTTCGTCCGGAATTTTTGCGCATTTCGCCCAACAACAAAAtt                                                   >  2:1702840/1‑100 (MQ=255)

                                                  gaagaaGCAGAGCTGGATTATCGCTTGATTAAGGTAGACCTGGGGAAAGGCGGTCAGTTTCGTCCGGAATTTTTGCGCATTTCGCCCAACAGCAAAATTc                                                  >  1:1552405/1‑100 (MQ=255)

                                                   aagaagCAGAGCTGGATTATCGCTTGATTAAGGTAGACCTGGGGAAAGGCGGTCAGTTTCGTCCGGAATTTTTGCGCATTTCGCCCAACAACAAAATTcc                                                 <  1:3721569/100‑1 (MQ=255)

                                                    agaagCAGAGCTGGATTATCGCTTGATTAAGGTAGACCTGGGGAAAGGCGGTCAGTTTCGTCCGGAATTTTTGCGCATTTCGCCCAACAACAAAATTCCg                                                >  1:2239950/1‑100 (MQ=255)

                                                    agaagCAGAGCTGGATTATCGCTTGATTAAGGTAGACCTGGGGAAAGACGGTCAGTTTCGTCCGGAATTTTTGCGCATTTCGCCCAACAACAAAATTCCg                                                <  1:3265362/100‑1 (MQ=255)

                                                     gaagCAGAGCTGGATTATCGCTTGATTAAGGTAGACCTGGGGAAAGGCGGTCAGTTTCGTCCGGAATTTTTGCGCATTTCGCCCAACAACAAAATTCCgg                                               <  2:245839/100‑1 (MQ=255)

                                                     gaagCAGAGCTGGATTATCGCTTGATTAAGGTAGACCTGGGGAAAGGCGGTCAGTTTCGTCCGGAATTTTTGCGCATTTCGCCCAACAACAAAATTCCgg                                               <  2:537439/100‑1 (MQ=255)

                                                     gaagCAGAGCTGGATTATCGCTTGATTAAGGTAGACCTGGGGAAAGGCGGTCAGTTTCGTCCGGAATTTTTGCGCATTTCGCCCAACAACAAAATTCCgg                                               <  2:3709797/100‑1 (MQ=255)

                                                           gagCTGGATTATCGCTTGATTAAGGTAGACCTGGGGAAAGGCGGTCAGTTTCGTCCGGAATTTTTGCGCATTTCGCCCAACAACAAAATTCCGGCAAttg                                         >  1:3394165/1‑100 (MQ=255)

                                                           gagCTGGATTATCGCTTGATTAAGGTAGACCTGGGGAAAGGCGGTCAGTTTCGTCCGGAATTTTTGCGCATTTCGCCCAACAACAAAATTCCGGCAAtag                                         >  2:2513510/1‑98 (MQ=255)

                                                                ggATTATCGCTTGATTAAGGTAGACCTGGGGAAAGGCGGTCAGTTTCGTCCGGAATTTTTGCGCATTTCGCCCAACAACAAAATTCCGGCAATTGTTGAt                                    <  2:3330351/100‑1 (MQ=255)

                                                                ggATTATCGCTTGATTAAGGTAGACCTGGGGAAAGGCGGTCAGTTTCGTCCGGAATTTTTGCGCATTTCGCCCAACAACAAAATTCCGGCAATTGTTGAt                                    <  2:2808099/100‑1 (MQ=255)

                                                                ggATTATCGCTTGATTAAGGTAGACCTGGGGAAAGGCGGTCAGTTTCGTCCGGAATTTTTGCGCATTTCGCCCAACAACAAAATTCCGGCAATTGTTGAt                                    <  1:2203713/100‑1 (MQ=255)

                                                                 gATTATCGCTTGATTAAGGTAGACCTGGGGAAAGGCGGTCAGTTTCGTCCGGAATTTTTGCGCATTTCGCCCAACAACAAAATTCCGGCAATTGTTGATc                                   <  1:3252899/100‑1 (MQ=255)

                                                                  aTTATCGCTTGATTAAGGTAGACCTGGGGAAAGGCGGTCAGTTTCGTCCGGAATTTTTGCGCATTTCGCCCAACAACAAAATTCCGGCAATTGTTGATCa                                  <  2:2342608/100‑1 (MQ=255)

                                                                   ttATCGCTTGATTAAGGTAGACCTGGGGAAAGGCGGTCAGTTTCGTCCGGAATTTTTGCGCATTTCGCCCAACAACAAAATTCCGGCAATTGTTGATCAt                                 >  1:2587193/1‑100 (MQ=255)

                                                                   ttATCGCTTGATTAAGGTAGACCTGGGGAAAGGCGGTCAGTTTCGTCCGGAATTTTTGCGCATTTCGCCCAACAACAAAATTCCGGCAATTGTTGATCAt                                 >  2:412796/1‑100 (MQ=255)

                                                                      tCGCTTGATTAAGGTAGACCTGGGGAAAGACGGTCAGTTTCGTCCGGAATTTTTGCGCATTTCGCCCAACAACAAAATTCCGGCAATTGTTGATCATtct                              <  1:2365963/100‑1 (MQ=255)

                                                                      tCGCTTGATTAAGGTAGACCTGGGGAAAGACGGTCAGTTTCGTCCGGAATTTTTGCGCATTTCGCCCAACAACAAAATTCCGGCAATTGTTGATCATtct                              <  2:1939814/100‑1 (MQ=255)

                                                                       cGCTTGATTAAGGTAGACCTGGGGAAAGACGGTCAGTTTCGTCCGGAATTTTTGCGCATTTCGCCCAACAACAAAATTCCGGCAATTGTTGATCATtctc                             >  1:359942/1‑100 (MQ=255)

                                                                       cGCTTGATTAAGGTAGACCTGGGGAAAGACGGTCAGTTTCGTCCGGAACTTTTGCGCATTTCGCCCAACAACAAAATTCCGGCAATTGTTGATCATtctc                             >  1:1421472/1‑100 (MQ=255)

                                                                        gCTTGATTAAGGTAGACCTGGGGAAAGGCGGTCAGTTTCGTCCGGAATTTTTGCGCATTTCGCCCAACAACAAAATTCCGGCAATTGTTGATCATTCTcc                            >  1:2048966/1‑100 (MQ=255)

                                                                        gCTTGATTAAGGTAGACCTGGGGAAAGGCGGTCAGTTTCGTCCGGAATTTTTGCGCATTTCGCCCAACAACAAAATTCCGGCAATTGTTGATCATTCTcc                            >  1:1416221/1‑100 (MQ=255)

                                                                        gCTTGATTAAGGTAGACCTGGGGAAAGGCGGTCAGTTTCGTCCGGAATTTTTGCGCATTTCGCCCAACAACAAAATTCCGGCAATTGTTGATCATTCTcc                            >  1:153136/1‑100 (MQ=255)

                                                                        gCTTGATTAAGGTAGACCTGGGGAAAGGCGGTCAGTTTCGTCCGGAATTTTTGCGCATTTCGCCCAACAACAAAATTCCGGCAATTGTTGATCATTCTcc                            >  1:3516680/1‑100 (MQ=255)

                                                                          ttGATTAAGGTAGACCTGGGGAAAGGCGGTCAGTTTCGTCCGGAATTTTTGCGCATTTCGCCCAACAACAAAATTCCGGCAATTGTTGATCATTCTCCTg                          >  1:3124530/1‑100 (MQ=255)

                                                                           tGATTAAGGTAGACCTGGGGAAAGGCGGTCAGTTTCGTCCGGAATTTTTGCGCATTTCGCCCAACAACAAAATTCCGGCAATTGTTGATCATTCTCCTGc                         >  1:2809899/1‑100 (MQ=255)

                                                                            gATTAAGGTAGACCTGGGGAAAGGCGGTCAGTTTCGTCCGGAATTTTTGCGCATTTCGCCCAACAACAAAATTCCGGCAATTGTTGATCATTCTCCTGcc                        <  2:2135920/100‑1 (MQ=255)

                                                                            gATTAAGGTAGACCTGGGGAAAGGCGGTCAGTTTCGTCCGGAATTTTTGCGCATTTCGCCCAACAACAAAATTCCAGCAATTGTTGATCATTCTCCTGcc                        >  2:1008971/1‑100 (MQ=255)

                                                                            gATTAAGGTAGACCTGGGGAAAGACGGTCAGTTTCGTCCGGAATTTTTGCGCATTTCGCCCAACAACAAAATTCCGGCAATTGTTGATCATTCTCCTGcc                        <  1:2026138/100‑1 (MQ=255)

                                                                                 aGGTAGACCTGGGGAAAGGCGGTCAGTTTCGTCCGGAATTTTTGCGCATTTCGCCCAACAACAAAATTCCGGCAATTGTTGATCATTCTCCTGCCGATgg                   >  2:2945758/1‑100 (MQ=255)

                                                                                 aGGTAGACCTGGGGAAAGACGGTCAGTTTCGTCCGGAATTTTTGCGCATTTCGCCCAACAACAAAATTCCGGCAATTGTTGATCATTCTCCTGCCGATgg                   >  1:1180397/1‑100 (MQ=255)

                                                                                  ggTAGACCTGGGGAAAGGCGGTCAGTTTCGTCCGGAATTTTTGCGCATTTCGCCCAACAACAAAATTCCGGCAATTGTTGATCATTCTCCTGCCGATggc                  >  2:1420788/1‑100 (MQ=255)

                                                                                    tAGACCTGGGGAAAGGCGGTCAGTTTCGTCCGGAATTTTTGCGCATTTCGCCCAACAACAAAATTCCGGCAATTGTTGATCATTCTCCTGCCGATggcgg                <  1:3811752/100‑1 (MQ=255)

                                                                                     aGACCTGGGGAAAGACGGTCAGTTTCGTCCGGAATTTTTGCGCATTTCGCCCAACAACAAAATTCCGGCAATTGTTGATCATTCTCCTGCCGATggcggc               <  2:3369560/100‑1 (MQ=255)

                                                                                       aCCTGGGGAAAGGCGGTCAGTTTCGTCCGGAATTTTTGCGCATTTCGCCCAACAACAAAATTCCGGCAATTGTTGATCATTCTCCTGCCGATGGCGGCGa             <  1:1065892/100‑1 (MQ=255)

                                                                                       aCCTGGGGAAAGACGGTCAGTTTCGTCCGGAATTTTTGCGCATTTCGCCCAACAACAAAATTCCGGCAATTGTTGATCATTCTCCTGCCGATGGCGGCGa             >  2:627742/1‑100 (MQ=255)

                                                                                        ccTGGGGAAAGGCGGTCAGTTTCGTCCGGAATTTTTGCGCATTTCGCCCAACAACAAAATTCCGGCAATTGTTGATCATTCTCCTGCCGATGGCGGCGaa            >  2:3684420/1‑100 (MQ=255)

                                                                                         cTGGGGAAAGGCGGTCAGTTTCGTCCGGAATTTTTGCGCATTTCGCCCAACAACAAAATTCCGGCAGTTGTTGATCATTCTCCTGCCGATGGCGGCGAAc           <  2:2734530/100‑1 (MQ=255)

                                                                                         cTGGGGAAAGGCGGTCAGTTTCGTCCGGAATTTTTGCGCATTTCGCCCAACAACAAAATTCCGGCAATTGTTGATCATTCTCCTGCCGATGGCGGCGAAc           <  2:1784966/100‑1 (MQ=255)

                                                                                         cTGGGGAAAGGCGGTCAGTTACGTCCGGAATTTTTGCGCATTTCGCCCAACAACAAAATTCCGGCAATTGTTGATCATTCTCCTGCCGATGGCGGCGAAc           <  2:34739/100‑1 (MQ=255)

                                                                                          tGGGGAACGGCGGTCAGTTTCGTCCGGAATTTTTGCGCATTTCGCCCAACAACAAAATTCCGGCAATTGTTGATCATTCTCCTGCCGATGGCGGCGAAcc          <  2:1065771/100‑1 (MQ=255)

                                                                                           ggggAAAGGCGGTCAGTTTCGTCCGGAATTTTTGCGCATTTCGCCCAACAACAAAATTCCGGCAATTGTTGATCATTCTCCTGCCGATGGCGGCGAACCg         >  1:3759395/1‑100 (MQ=255)

                                                                                            gggAAAGGCGGTCAGTTTCGTCCGGAATTTTTGCGCATTTCGCCCAACAACAAAATTCCGGCAATTGTTGATCATTCTCCTGCCGATGGCGGCGAACCGc        <  2:1679647/100‑1 (MQ=255)

                                                                                             ggAAAGGCGGTCAGTTTCGTCCGGAATTTTTGCGCATTTCGCCCAACAACAAAATTCCGGCAATTGTTGATCATTCTCCTGCCGATGGCGGCGAACCGCt       >  1:2977827/1‑100 (MQ=255)

                                                                                              gAAAGACGGTCAGTTTCGTCCGGAATTTTTGCGCATTTCGCCCAACAACAAAATTCCGGCAATTGTTGATCATTCTCCTGCCGATGGCGGCGAACCGCTa      <  1:3177820/100‑1 (MQ=255)

                                                                                                aaGGCGGTCAGTTTCGTCCGGAATTTTTGCGCATTTCGCCCAACAACAAAATTCCGGCAATTGTTGATCATTCTCCTGCCGATGGCGGCGAACCGCTAAg    <  2:3578276/100‑1 (MQ=255)

                                                                                                aaGACGGTCAGTTTCGTCCGGAATTTTTGCGCATTTCGCCCAACAACAAAATTCCGGCAATTGTTGATCATTCTCCTGCCGATGGCGGCGAACCGCTAAg    >  2:2074748/1‑100 (MQ=255)

                                                                                                  ggCGGTCAGTTTCGTCCGGAATTTTTGCGCATTTCGCCCAACAACAAAATTCCGGCAATTGTTGATCATTCTCCTGCCGATGGCGGCGAACCGCTAAGcc  >  2:1742487/1‑100 (MQ=255)

                                                                                                  ggCGGTCAGTTTCGTCCGGAATTTTTGCGCATTTCGCCCAACAACAAAATTCCGGCAATTGTTGATCATTCTCCTGCCGATGGCGGCGAACCGCTAAGcc  >  1:938288/1‑100 (MQ=255)

ATCTCTATTTCGCCCCGACACCCAATGGTCACAAAATTACGCTGTTTCTCGAAGAAGCAGAGCTGGATTATCGCTTGATTAAGGTAGACCTGGGGAAAGGCGGTCAGTTTCGTCCGGAATTTTTGCGCATTTCGCCCAACAACAAAATTCCGGCAATTGTTGATCATTCTCCTGCCGATGGCGGCGAACCGCTAAGCC  >  NC_000913/2420628‑2420825

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A