Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A11 F142 I0 R1
|
175 |
91.2 |
4812830 |
94.5% |
4548124 |
99.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
1,681,932 |
T→C |
100% |
P33P (CCA→CCG) |
ydgC ← |
GlpM family inner membrane protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 1,681,932 | 0 | T | C | 94.6%
| 233.7
/ 1.8
| 74 | P33P (CCA→CCG) | ydgC | GlpM family inner membrane protein |
| Reads supporting (aligned to +/- strand): ref base T (2/2); new base C (32/38); total (34/40) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.86e-01 |
CGACCACATACTAAAAATGATGGTTGCGCGTAAGGCTTCAATGCCGCGTTCGCTGGCAACAATATAATGCGCGATAAGCGCAAAGGTCGGGAAAAGTGGAATCAGCCCGGCGATATAATAATTTTTCGTTTTTGCTAAAACACCAATCAACAGCACTACCAGCGCACCGAGCGCGGCTTTGATTACCAGCCC > NC_000913/1681836‑1682027
|
cGACCACATACTAAAAATGATGGTTGCGCGTAAGGCTTCAATGCCGCGTTCGCTGGCAACAATATAATGCGCGATAAGCGCAAAGGTCGGGAAAAGCGGa < 1:1893741/100‑1 (MQ=255)
gACCACATACTAAAAATGATGGTTGCGCGTAAGGCTTCAATGCCGCGTTCGCTGGCAACAATATAATGCGCGATAAGCGCAAAGGTCGGGAAAAGCGGaa > 1:2078532/1‑100 (MQ=255)
cacaTACTATAAATGATGGTTGCGTGTAAGGCTTCAATGCCGCGTTCGCTGGCAACAATATAATGCGCGATAAGCGCAAAGGTCGGGAAAAGCGGAATc < 2:2195366/99‑1 (MQ=255)
acaTACTAAAAATGATGGTTGCGCGTAAGGCTTCAATGCCGCGTTCGCTGGCAACAATATAATGCGCGATAAGCGCAAAGGTCGGGAAAAGCGGAATCAg > 1:990622/1‑100 (MQ=255)
caTACTAAAAATGATGGTTGCGCGTAAGGCTTCAATGCCGCGTTCGCTGGCAACAATATAATGCGCTATAAGCGCAAAGGTCGGGAAAAGCGGAATCAg < 2:1315482/99‑1 (MQ=255)
caTACTAAAAATGAGGGTTGCGCGTAAGGGTTCAATGCCGCGTGCGCTGGCAACAATATAATGCGCGATAAGCGCAAAGGTCGGGAAAAGCGGAATCAGc < 2:720151/100‑1 (MQ=255)
tACTAAAAATGATGGTTGCGCGTAAGGCTTCAATGCCGCGTTCGCTGGCAACAATATAATGCGCGATAAGCGCAAAGGTCGGGAAAAGCGGAATCAGccc < 2:541316/100‑1 (MQ=255)
tACTAAAAATGATGGTTGCGCGTAAGGCTTCAATGCCGCGTTCGCTGGCAACAATATAATGCGCGATAAGCGCAAAGGTCGGGAAAAGCGGAATCAGccc < 2:1067222/100‑1 (MQ=255)
aCTAAAAATGATGGTTGCGCGTAAGGCTTCAATGCCGCGTTCGCTGGCAACAATATAATGCGCGATAAGCGCAAAGGTCGGGAAAAGTGGAATCAGCCCg > 2:699529/1‑100 (MQ=255)
aCTAAAAATGATAGTTGCGCATAAGGCTTCAATGCCGCGTTCGCTGGCAACAATATAATTCGCGATAAGCGCAAAGGTCGGGAAAAGCGGAATCAGccc > 2:228756/1‑99 (MQ=255)
cTAAAAATGATGGTTGCGCGTAAGGCTTCAATGCCGCGTTCGCTGGCAACAATATAATGCGCGATAAGCGCAAAGGTCGGGAAAAGCGGAATCAGCCCgg < 1:1341317/100‑1 (MQ=255)
cTAAAAATGATGGTTGCGCGTAAGGCTTCAATGCCGCGTTCGCTGGCAACAATATAATGCGCGATAAGCGCAAAGGTCGGGAAAAGCGGAATCAGCCCgg > 1:830682/1‑100 (MQ=255)
cTAAAAATGATGGTTGCGCGTAAGGCTTCAATGCCGCGTTCGCTGGCAACAATATAATGCGCGATAAGCGCAAAGGTCGGGAAAAGCGGAATCAGCCCgg < 1:2010706/100‑1 (MQ=255)
aaaaaTGATGGTTGCGCGTAAGGCTTCAATGCCGCGTTCGCTGGCAACAATATAATGCGCGATAAGCGCAAAGGTCGGGAAAAGCGGAATCAGCCCGGCg < 1:1224899/100‑1 (MQ=255)
aaaTGAAGGTTGCGCGTAAGGCTTCAATGCCGCGTTCGCTGGCAACAATATAATGCGCGATAAGCGCAAAGGTCGGGAAAAGCGGAATCAGCCCGGCGat < 2:520824/100‑1 (MQ=255)
atgatgGTTGCGCGTAAGGCTTCAATGCCGCGTTCGCTGGCAACAATATAATGCGCGATAAGCGCAAAGGTCGGGAAAAGCGGAATCAGCCCGGCGatat < 2:1078557/100‑1 (MQ=255)
atgatgGTTGCGCGTAAGGCTTCAATGCCGCGTTCGCTGGCAACAATATAATGCGCGATAAGCGCAAAGGTCGGGAAAAGCGGAATCAGCCCGGCGatat > 1:2050363/1‑100 (MQ=255)
atgatgGTTGCGCGTAAGGCTTCAATGCCGCGTTCGCTGGCAACAATATAATGCGCGATAAGCGCAAAGGTCGGGAAAAGCGGAATCAGCCCGGCAatat < 1:1387300/100‑1 (MQ=255)
gatgGTTGCGCGTAAGGCTTCAATGCCGCGTTCGCTGGCAACAATATAATGCGCGATAAGCGCAAAGGTCGGGAAAAGCGGAATCAGCCCGGCGATataa > 1:709192/1‑100 (MQ=255)
gTTGCGCGTAAGGCTTCAATGCCGCGTTCGCTGGCAACAATATAATGCGCGATAAGCGCAAAGGTCGGGAAAAGCGGAATCAGCCCGGCGATAtaataa > 2:867530/1‑99 (MQ=255)
gTTGCGCGTAAGGCTTCAATGCCGCGTTCGCTGGCAACAATATAATGCGCGATAAGCGCAAAGGTCGGGAAAAGCGGAATCAGCCCGGCGATATaataat > 1:2230721/1‑100 (MQ=255)
gcgcGTAAGGCTTCAATGCCGCGTTCGCTGGCAACAATATAATGCGCGATAAGCGCAAAGGTCGGGAAAAGCGGAATCAGCCCGGCGATATAATAAtttt < 1:1506787/100‑1 (MQ=255)
cgcgTAAGGCTTCAATGCCGCGTTCGCTGGCAACAATATAATGCGCGATAAGCGCAAAGGTCGGGAAAAGCGGAATCAGCCCGGCGATATAATAAttttt > 1:251736/1‑100 (MQ=255)
cgcgTAAGGCTTCAATGCCGCGTTCGCTGGCAACAATATAATGCGCGATAAGCGCAAAGGTCGGGAAAAGCGGAATCAGCCCGGCGATATAATAAttttt < 1:270263/100‑1 (MQ=255)
gcgTAAGGCTTCAATGCCGCGTTCGCTGGCAACAATATAATGCGCGATAAGCGCAAAGGTCGGGAAAAGCGGAATCAGCCCGGCGATATAATAATTTTTc > 1:2253853/1‑100 (MQ=255)
cgTAAGGCTTCAATGCCGCGTTCGCTGGCAACAATATAATGCGCGATAAGCGCAAAGGTCGGGAAAAGTGGAATCAGCCCGGCGATATAATAAtttt > 2:2094713/1‑97 (MQ=255)
gTAAGGCTTCAATGCCGCGTTCGCTGGCAACAATATAATGCGCGATAAGCGCAAAGGTCGGGAAAAGCGGAATCAGCCCGGCGATATAATAATTTTTCg < 1:1172540/99‑1 (MQ=255)
ggCTTCTATGCCGCGTTCGCTGGCAACAATATAATGCGCGAGAAGCGCAAAGGTCGGGAAAAGCGGAATCAGCCCGGCGATATAATAATTTTTCGttt < 1:137607/98‑1 (MQ=255)
ggCTTCAATGCCGCGTTCGCTGGCAACAATATAATGCGCGATAAGCGCAAAGGTCGGGAAAAGCGGAATCAGCCCGGCGATATAATAATTTTTTGttttt > 2:197968/1‑100 (MQ=255)
ggCTTCAATGCCGCGTTCGCTGGCAACAATATAATGCGCGATAAGCGCAAAGGTCGGGAAAAGCGGAATCAGCCCGGCGATATAATAATTTTTCGttttt < 1:2098714/100‑1 (MQ=255)
gCTTCAATGCCGCGTTCGCTGGCAACAATATAATGCGCGATAAGCGCAAAGGTCGGGAAAAGCGGAATCAGCCCGGCGATATAATAATTTTTCGTTTTTg < 2:1867513/100‑1 (MQ=255)
cTTCAATGCCGCGTTCGCTGGCAACAATATAATGCGCGATAAGCGCAAAGGTCGGGAAAAGCGGAATCAGCCCGGCGATATAATAATTTTTCGTTTTTGc > 2:1442332/1‑100 (MQ=255)
cTTCAATGCCGCGTTCGCTGGCAACAATATAATGCGCGATAAGCGCAAAGGTCGGGAAAAGCGGAATCAGCCCGGCGATATAATAATTTTTCGTTTTTGc < 1:1164185/100‑1 (MQ=255)
ttCAATGCCGCGTTCGCTGGCAACAATATAATGCGCGATAAGCGCAAAGGTCGGGAAAAGCGGAATCAGCCCGGCGATATAATAATTTTTCGTTTTTGCt < 2:1121016/100‑1 (MQ=255)
aaTGCCGCGTTCGCTGGCAACAATATAATGCGCGATAAGCGCAAAGGTCGGGAAAAGCGGAATCAGCCCGGCGATATAATAATTTTTCGTTTTTGCTaaa < 2:2180962/100‑1 (MQ=255)
aTGCCGCGTTCGCTGGCAACAATATAATGCGCGATAAGCGCAAAGGTCGGGAAAAGCGGAATCAGCCCGGCGATATAATAATTTTTCGTTTTTGCTaaaa > 1:624657/1‑100 (MQ=255)
tGCCGCGTTCGCTGGCAACAATATAATGCGCGATAAGCGCAAAGGTCGGGAAAAGCGGAATCAGCCCGGCGATATAATAATTTTTCGTTTTTGCTAAAac < 2:2328327/100‑1 (MQ=255)
tGCCGCGTTCGCTGGCAACAATATAATGCGCGATAAGCCAAAAGGTCGGGAAAAGCGGAATCAGCCCGGCGATATAATAATTTTTCGTTTTTGCTAAAac < 2:940299/100‑1 (MQ=255)
tGCCACGTTCGCTGGCAACAATATAATGCGCGATAAGCGCAAAGGTCGGGAAAAGCGGAATCAGCCCGGCGATATAATAATTTTTCGTTTTTGCTAAAac > 2:1862740/1‑100 (MQ=255)
gCCGCGTTCGCTGGCAATAATATAATGCGCGATAAGCGCAAAGGTCGGGAAAAGCGGAATCAGGCCGGCGATATAATAATTTTTCGTTTATGCTaaaaa > 2:1879215/1‑98 (MQ=255)
ccGCGTTCGCTGGCAACAATATAATGCGCGATAAGCGCAAAGGTCGGGAAAAGCGGAATCAGCCCGGCGATATAATAATTTTTCGTTTTTGCTAAAacac > 1:1377860/1‑100 (MQ=255)
ccGCGTTCGCTGGCAACAATATAATGCGCGATAAGCGCAAAGGTCGGGAAAAGCGGAATCAGCCCGGCGATATAATAATTTTTCGTTTTTGCTAAAacac > 1:1079108/1‑100 (MQ=255)
cgcgTTCGCTGGCAACAATATAATGCGCGATAAGCGCAAAGGTCGGGAAAAGCGGAATCAGCCCGGCGATATAATAATTTTTCGTTTTTGCTAAAACAcc > 2:2202186/1‑100 (MQ=255)
gTTCGCTGGCAACAATATAATGCGCGATAAGCGCAAAGGTCGGGAAAAGCGGAATCAGCCCGGCGATATAATAATTTTTCGTTTTTGCTAAAACACCAAt > 1:1045484/1‑100 (MQ=255)
gTTCGCTGGCAACAATATAATGCGCGATAAGCGCAAAGGTCGGGAAAAGCGGAATCAGCCCGGCGATATAATAATTTTTCGTTTTTGCTAAAACACCAAt > 2:893043/1‑100 (MQ=255)
tCGCTGGCAACAATATAATGCGCGATAAGCGCAAAGGTCGGGAAAAGCGGAATCAGCCCGGCGATATAATAATTTTTCGTTTTTGCTAAAACACCAATCa < 2:2373489/100‑1 (MQ=255)
cTGGCAACAATATAATGCGCGATAAGCGCAAAGGTCGGGAAAAGCGGAATCAGCCCGGCGATATAATAATTTTTCGTTTTTGCTAAAACACCAATCAACa < 2:1031316/100‑1 (MQ=255)
cTGGCAACAATATAATGCGCGATAAGCGCAAAGGTCGGGAAAAGCGGAATCAGCCCGGCGATATAATAATTTTTCGTTTTTGCTAAAACACCAATCAACa < 2:1702507/100‑1 (MQ=255)
ggCAACAATATAATGCGCGATAAGCGCAAAGGTCGGGAAAAGTGGAATCAGCCCGGCGATATAATAATTTTTCGTTTTTGCTAAAACACCAATCAACAGc < 1:699537/100‑1 (MQ=255)
caaTATAATGCGCGATAAGCGCAAAGGTCGGGAAAAGCGGAATCAGCCCGGCGATATAATAATTTTTCGTTTTTTTTAATACACCAATCAAAAAAACTAc > 2:1058759/1‑100 (MQ=255)
caaTATAATGCGCGATAAGCGCAAAGGTCGGGAAAAGCGGAATCAGCCCGGCGATATAATAATTTTTCGTTTTTGCTAAAACACCAATCAACAGCACTAc > 2:390830/1‑100 (MQ=255)
aaTATAATGCGCGATAAGCGCAAAGGTCGGGAAAAGCGGAATCAGCCCGGCGATATAATAATTTTTCGTTTTTGCTAAAACACCAATCAACAGCACTAcc < 1:2288002/100‑1 (MQ=255)
aaTATAATGCGCCATAAGCGCAAAGGTCTGGAAAAGCGGAATCAGCCCGGCGATATAATAATTTTTCGTTTTTGCTAAAACACCAATCAACAGCACTAcc < 2:970400/100‑1 (MQ=255)
atatAATGCGCGATAAGCGCAAAGGTCGGGAAAAGCGGAATCAGCCCGGCGATATAATAATTTTTCGTTTTTGCTAAAACACCAATCAACAGCACTACCa > 1:975553/1‑100 (MQ=255)
taATGCGCGATAAGCGCAAAGGTAGGGAAAAGCGGAATCAGCCCGGCGATATAATAATTTTTCGTTTTTGCTAAAACACCAATCAACAGCACTACCAgcg > 2:60032/1‑100 (MQ=255)
aaTGCGCGATAAGCGAAAAGGTCGGGAAAAGCGGAATCAGCCCGGCGATATAATAATTTTTCGTTTTTGCTAAAACACCAATCAACAGCACTACCAgcg < 1:1073025/99‑1 (MQ=255)
tGCGCGATAAGCGCAAAGGTCGGGAAAAGCGGAATCAGCCCGGCGATATAATAATTTTTCGTTTTTGCTAAAACACCAATCAACAGCACTACCAGCGCa > 1:986827/1‑99 (MQ=255)
tGCGCGATAAGCGCAAAGGTCGGGAAAAGCGGAATCAGCCCGGCGATATAATAATTTTTCGTTTTTGCTAAAACACCAATCAACAGCACTACCAGCGCAc < 1:1522280/100‑1 (MQ=255)
tGCGCGATAAGCGCAAAGGTCGGGAAAAGCGGAATCAGCCCGGCGATATAATAATTTTTCGTTTTTGCTAAAACACCAATCAACAGCACTACCAGCGCAc < 1:1530445/100‑1 (MQ=255)
tGCGCGATAAGCGCAAAGGTCGGGAAAAGCGGAATCAGCCCGGCGATATAATAATTTTTCGTTTTTGCTAAAACACCAATCAACAGCACTACCAGCGCAc > 1:1538292/1‑100 (MQ=255)
tGCGCGATAAGCGCAAAGGTCGGGAAAAGCGGAATCAGCCCGGCGATATAATAATTTTTCGTTTTTGCTAAAACACCAATCAACAGCACTACCAGCGCAc > 1:872816/1‑100 (MQ=255)
cgATAAGCGCAAAGGTCGGGAAAAGTGGAATCAGCCCGGCGATATAATAATTTTTCGTTTTTGCTAAAACACCAATCAACAGCACTACCAGCGCACCGAg < 1:1889455/100‑1 (MQ=255)
aTAAGCGCAAAGGTCGGGAAAAGCGGAATCAGCCCGGCGATATAATAATTTTTCGTTTTTGCTAAAACACCAATCAACAGCACTACCAGCGCACCGAgcg > 2:957680/1‑100 (MQ=255)
cAAAGGTCGGGAAGAGCGGAATCAGCCCGGCGATATAATAATTTTTCGTTTTTGCTAAAACACCAATCAACAGCACTACCAGCGCACCGAGCGCGGCttt < 1:2276775/100‑1 (MQ=255)
aaGGTCGGGAAAAGCGGAATCAGCCCGGCGATATAATAATTTTTCGTTTTTGCTAAAACACCAATCAACAGCACTACCAGCGCACCGAGCGCGGCTTTGa < 2:664438/100‑1 (MQ=255)
aGGTCGAGAAACGCGGAATCAGTCCGGCGATATAATAATTTTTCGATTTTGCTAAAACACCTATCAACAGCACTTTCAGCGCACCGAGCGCGGCTTTg < 2:240548/98‑1 (MQ=255)
gTCGGGAAAAGCGTAATCAGCACGGCGACGTAATAATTTTTCGTTTTTGCTACAACACAAATCAACAGCACTACCAGCGCACCGAGCGCGACTTTGa > 2:1991509/1‑97 (MQ=255)
tCGGGAAAAGCGGAATCAGCCCGGCGATATAATAATTTTTCGTTTTTGCTAAAACACCAATCAACAGCACTACCAGCGCACCGAGCGCGGCTTTGATTAc < 2:1377846/100‑1 (MQ=255)
tCGGGAAAAGCGGAATCAGCCCGGCGATATAATAATTTTTCGTTTTTGCTAAAACACCAATCAACAACACTACCAGCGCACCGAGCGCGGCTTTGATTAc > 2:2016011/1‑100 (MQ=255)
cGGGAAAAGCGGAATCAGCCCGGCGATATAATAATTTTTCGTTTTTGCTAAAACACCAATCAACAGCACTACCAGCGCACCGAGCGCGGCTTTGATTAcc < 1:741532/100‑1 (MQ=255)
gggAAAAGCGGAATCAGCCCGGCGATATAATAATTTTTCGTTTTTGCTAAAACACCAATCAACAGCACTACCAGCGCACCGAGCGCGGCTTTGATTACCa > 1:560153/1‑100 (MQ=255)
ggAAAAGCGGAATCAGCCCGGCGATATAATAATTTTTCGTTTTTGCTAAAACACCAATCAACAGCACTACCAGCGCACCGAGCGCGGCTTTGATTACCa > 2:2290513/1‑99 (MQ=255)
aaaaGCGGAATCAGCCCGGCGATATAATAATTTTTCGTTTTTGCTAAAACACCAATCAACAGCACTACCTGCGCACCGAGCGCGGCTTTGATTACCAGcc < 2:1417678/100‑1 (MQ=255)
aaaGCGGAATCAGCCCGGCGATATAATAATTTTTCGTTTTTGATAAAACACCAATCAACAGCACTACCAGCGCACCGAGCGCGGCTTTGATTACCAGccc < 2:1679757/100‑1 (MQ=255)
|
CGACCACATACTAAAAATGATGGTTGCGCGTAAGGCTTCAATGCCGCGTTCGCTGGCAACAATATAATGCGCGATAAGCGCAAAGGTCGGGAAAAGTGGAATCAGCCCGGCGATATAATAATTTTTCGTTTTTGCTAAAACACCAATCAACAGCACTACCAGCGCACCGAGCGCGGCTTTGATTACCAGCCC > NC_000913/1681836‑1682027
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
