Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A11 F142 I0 R1
|
175 |
91.2 |
4812830 |
94.5% |
4548124 |
99.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
3,705,985 |
T→C |
22.0% |
intergenic (‑195/+113) |
dppB ← / ← dppA |
dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,705,985 | 0 | T | C | 22.0%
| 340.7
/ 91.2
| 164 | intergenic (‑195/+113) | dppB/dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| Reads supporting (aligned to +/- strand): ref base T (59/68); new base C (32/4); total (92/72) |
| Fisher's exact test for biased strand distribution p-value = 2.96e-06 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 4.38e-01 |
Only 100 of 164 total aligned reads displayed.
CTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCAATACATTGCAGA‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTC > NC_000913/3705888‑3706082
|
ctgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTAt > 1:1762500/1‑100 (MQ=255)
ccGGATGGCGCTGCAAGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCg < 2:1861656/100‑1 (MQ=255)
cGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCgg < 1:473554/100‑1 (MQ=255)
gATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGcc < 2:1589626/100‑1 (MQ=255)
aTGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCt < 1:1490417/100‑1 (MQ=255)
aTGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATAAGGCGTTAACGCCGCATCCGGcat < 1:1668067/100‑3 (MQ=37)
aTGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGGTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCt < 1:1695748/100‑1 (MQ=255)
cgcTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACaa < 2:1183442/100‑1 (MQ=255)
gcTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACaaa > 2:2158086/1‑100 (MQ=255)
gcTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACaaa > 2:36951/1‑100 (MQ=255)
gCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAAt > 1:678344/1‑99 (MQ=255)
gCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATAAGGCGTTAACGCCGCATCCGGcataaacaaag < 2:1421344/100‑11 (MQ=21)
ncGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGTGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGt > 2:1327757/2‑100 (MQ=255)
cGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTg > 1:2375768/1‑100 (MQ=255)
agagGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCaa < 1:2158111/100‑1 (MQ=255)
agagGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCaa > 2:557700/1‑100 (MQ=255)
ggCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAAtt > 1:1482337/1‑100 (MQ=255)
ggCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAAtt > 1:898542/1‑100 (MQ=255)
ggCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAAtt < 1:557703/100‑1 (MQ=255)
ggCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAAtt > 2:694664/1‑100 (MQ=255)
ggCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAAt < 1:1244855/99‑1 (MQ=255)
gCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTc < 1:191547/100‑1 (MQ=255)
cacaGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCa > 1:658600/1‑100 (MQ=255)
cacaGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCa > 1:1906128/1‑100 (MQ=255)
cacaGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCa > 2:1518180/1‑100 (MQ=255)
cacaGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCa < 2:1165853/100‑1 (MQ=255)
acaGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCaa < 1:1228734/100‑1 (MQ=255)
gcgcCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCAATAc > 1:2205284/1‑100 (MQ=255)
cgcCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCATTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCAATACa < 2:766804/100‑1 (MQ=255)
cACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCAATACATTg < 2:1772647/100‑1 (MQ=255)
aCCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCAATACATTGc < 2:628734/100‑1 (MQ=255)
aCCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCAATACATTGc < 2:389226/100‑1 (MQ=255)
aCCGGATATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACCACTTATACGGCCT‑‑ACAAAATCGTGCAAATTCAATACATTGc > 2:1688367/1‑100 (MQ=17)
ccGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCAATACATTGCa > 2:1501244/1‑100 (MQ=255)
cGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCAATACATTGctg < 1:1626529/100‑3 (MQ=255)
ggTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCAATACATTCCAGa‑a > 2:2234677/1‑100 (MQ=255)
tataCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCAATACATTGCAGA‑Att > 1:1853191/1‑100 (MQ=255)
taCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCAATACATTGCAGA‑Atttt < 1:896111/100‑1 (MQ=255)
aCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCAATACATTGCAGA‑ATTTTc < 1:962640/100‑1 (MQ=255)
cataaaCAAAGCGCACTTTGTTTATGACGGATGCGGAGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCAATACATTGCAGA‑ATTTTC‑‑GTAggg > 2:613275/6‑99 (MQ=17)
gttgACAAAGTGCGCTTTGTTTATGCCTGATGCGGCGTTAACGCCTTATGCGGCCT‑‑ACAAAATCGTGCACATTCAATACATTGCTGA‑ATTTTC‑‑GTAgt < 2:1478948/98‑2 (MQ=17)
gttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCAATACATTGCAGA‑ATTTTC‑‑GTAGGcc < 1:536768/100‑1 (MQ=255)
gttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCAATACATTGCAGA‑ATTTTC‑‑GTAGGcc > 1:1879231/1‑100 (MQ=255)
ttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCAATACATTGCAGA‑ATTTTC‑‑GTAGGcc < 1:849583/99‑1 (MQ=255)
ttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCAATACATTGCAGA‑ATTTTC‑‑GTAGGCCt < 2:838959/100‑1 (MQ=255)
tgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCAATACATTGCAGA‑ATTTTC‑‑GTAGGCCTg > 1:1557407/1‑100 (MQ=255)
tgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCAATACATTGCAGA‑ATTTTC‑‑GTAGGCCTg > 1:809317/1‑100 (MQ=255)
tgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCAATACATTGCAGA‑ATTTTC‑‑GTAGGCCTg > 1:2274302/1‑100 (MQ=255)
tgACAAAGTGCGCTTTGTTTAAACCAGATGCGGCGTAAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCAATACATTGCAGA‑ATTTTC‑‑GTAGGCCTg > 2:1146748/1‑100 (MQ=17)
gACAAAGTGCGCTTTGTTTATGCCGGATGTGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCAATACATTGCAGA‑ATTTTC‑‑GTAGGCCTGa < 1:885018/100‑1 (MQ=255)
gACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCAATACATTGCAGA‑ATTTTC‑‑GTAGGCCTgn < 2:532843/100‑2 (MQ=255)
gACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCAATACATTGCAGA‑ATTTTC‑‑GTAGGCCTGa > 1:2325648/1‑100 (MQ=255)
cAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCAATACATTGCAGA‑ATTTTC‑‑GTAGGCCTGATa > 1:2304740/1‑100 (MQ=255)
aaaGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCAATACATTGCAGA‑ATTTTC‑‑GTAGGCCTGATa > 1:1093588/1‑99 (MQ=255)
gTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCAATACATTGCAGA‑ATTTTC‑‑GTAGGCCTGATAAGCg > 1:626724/1‑100 (MQ=255)
gcTTTGTTTATGCCAGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCAATACATTGTAGA‑ATTTTC‑‑GTATGCCTGATAAGCGGAgc > 2:1087161/1‑100 (MQ=255)
cTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCAATACATTGCAGA‑ATTTTC‑‑GTAGGCCTGATAAGCGGAgcg < 2:1593144/100‑1 (MQ=255)
cTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCAATACATTGCAGA‑ATTTTC‑‑GTAGGCCTGATAAGCGGAgcg > 1:448521/1‑100 (MQ=255)
ttGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCAATACATTGCAGA‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCa < 1:156997/100‑1 (MQ=255)
ttGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCAATACATTGCAGA‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCa < 2:2303915/100‑1 (MQ=255)
tttgtaggCCGGATAAGGCGTTTACGCCGCATCCGGCCT‑‑ACAAAAGCATGCAAATTCAATATATTGCAGA‑GTTCAC‑‑GTAGGCCTGATAAGCGTAGCGCAt > 1:104203/8‑100 (MQ=17)
tGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCAATACATTGCAGA‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCAt > 1:1038774/1‑100 (MQ=255)
gTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCAATACATTGCAGA‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATc < 2:1242435/100‑1 (MQ=255)
gTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCAATACATTGCAGA‑ATTTTC‑‑GTAGGCATGATAAGCGGAGCGCAt > 2:1100121/1‑99 (MQ=255)
ttATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCAATACATTGCAGA‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAg < 2:2117278/100‑1 (MQ=255)
ttATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCAATACATTGCAGA‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAg < 1:204111/100‑1 (MQ=255)
ttATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCAATACATTGCAGA‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAg < 2:2325620/100‑1 (MQ=255)
gtaggCCGGATAAGGCGTTTACGCCGCATCCGGCCT‑‑ACAAAATCGTGCTAATTCAATATATTGCAGA‑AACCTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAg > 2:2092467/5‑100 (MQ=18)
taggCCGGATAAGGCGTTCACGCCGCATCCGGCGT‑‑ACGAAATCGTGCTAATTCAATATATTGTGGG‑CTCCAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAgg > 2:1209077/4‑100 (MQ=21)
taggCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑‑ACAAAATCGCTTAAATTCAATATATTGCACC‑ATCCTC‑‑GTAGGCCTGATAAGCGTAGCGCATCAgg > 1:2076592/4‑100 (MQ=21)
aggCCGGATAAGGCGTTTACGCCGCATCCGGCCT‑‑ACAAAATCGTGCTAATTCAATATATTGCAGA‑AACCTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGc > 2:2401164/3‑100 (MQ=18)
aggCCGGATAAGGCGTTCGCGCCGCATCCGGCCT‑‑ACAAAAGTTTGCAAATTCAATAAATTGCAGA‑ATTCAT‑‑GTAGGCCTGATAAGCGAAGCGCATCAGGc > 2:319599/3‑100 (MQ=18)
aggCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑‑ACAAAATCGCTTAAATTCAATATATTGCACC‑ATCCTC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGc > 2:1857376/3‑100 (MQ=21)
aggCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑‑AC‑AAATCATGCAAATCCAAAATATTGCAGG‑AGTTAT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 2:232740/3‑100 (MQ=21)
aTGCCGGATGCGGCGTGATCGTCTTATCCGGCCT‑‑ACAGAGGCGTATAAATTCAATGTATTGCAGT‑TTATTG‑‑GTAGGCCTGATGCGCTGCGCTTATCAGGc < 2:791867/100‑1 (MQ=21)
ggctggataaggcgTTCACGCCGCATCCAGCCT‑‑ACAAAATTGTGCAAAATCAATGGATTGCACA‑GCTAGC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:1530560/11‑100 (MQ=25)
ggCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑‑ACAAAAACATGCAAATTCAATAGATTGCAGA‑GATTAT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:1054276/2‑100 (MQ=17)
gcgggataaggcgTTCACGCAGGATACGGCCA‑‑ACAAAATAGCTTAAATTCAATAGATTGCACC‑ATACTC‑‑GTAGGCCTGATAAGCGTAGGGCATCAGGCa > 2:2037949/10‑99 (MQ=12)
gCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑‑ACAAAGTCGTATAAATTCAATGTATTGCAGT‑TTATTG‑‑GTAGGCCTGATAAGCGCAGCGCATCAGGCaa > 1:2148007/1‑99 (MQ=25)
gCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑‑ACAAAACTTTGCAAATTCAATATATTGC‑‑A‑ATCTCCGTGTAGGCCTGATAAGCGTAGCGCATCAGGCaa > 1:2105877/1‑99 (MQ=18)
ccGGATAAGGCGTTAACGCCGCATCCGGCCT‑‑ACCAAATCGTGCAAATTCAATACATTGCAGA‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAtt > 2:1923862/1‑100 (MQ=18)
cggataaggcgTTCACGCCGCATCCGGCCT‑‑ACAAAATCATGAAAATTCAATACATTGCAAG‑ATTTTC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCacgc > 1:2325053/8‑97 (MQ=17)
cGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCAATACATTGCAGA‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAttt < 1:158232/100‑1 (MQ=255)
ggataaggcgTTTACGCCGCATCCGGCCT‑‑ACAAAAGCATGCAAATTCAATATATTGCAGA‑GTTCAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgtt > 2:160387/7‑99 (MQ=17)
ggataaggcgTTCACGCCGCATCCTGCCT‑‑ACAAAAGCACGCAAATTCAATATATTGCAGA‑GATGGC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAtttt > 1:2268452/7‑100 (MQ=14)
ggataaggcgTTCACGCCGCATCCTGCCT‑‑ACAAAAGCACGCAAATTCAATATATTGCAGA‑GATGGC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAtttt > 2:1280876/7‑100 (MQ=14)
ggataaggcgTTCACGCCGCATCCGGCCT‑‑ACAAGATCGTGCAAATTCAATATATTGCATG‑AGCCAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 2:2117568/7‑100 (MQ=17)
ggataaggcgTTCACGCCGCATCCGGCCT‑‑ACAAAATCGCTTAAATTCAATATATTGCACC‑ATCCTC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaattc > 2:933864/7‑96 (MQ=21)
ggataaggcgTTCACGCCGCATCCGGCCT‑‑ACAAAATCGCTTAAATTCAATATATTGCACC‑ATCCTC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAattc > 2:1656026/7‑99 (MQ=21)
ggataaggcgTTCACGCCGCATCCGGCCT‑‑ACAAAAACATGCAAATTCAATAGATTGCAGAGATTAT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAattt > 1:1110079/7‑100 (MQ=17)
ggataaggcgTTCACGCCGCATCCGGCCT‑‑AC‑AAATCATGCAAATCCAAAATATTGCAGG‑AGTTAT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAtttat > 1:717187/7‑98 (MQ=25)
ggataaggcgTTAACGCCGCATCCGGCATAAACAAAATCGTGCAAATTCAATACATTGCAGA‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAtt > 1:1378469/7‑100 (MQ=18)
cgTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCAATACATTGCAGA‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttg < 1:1664770/100‑1 (MQ=255)
gTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCAATACATTGCAGA‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttgc < 2:1874209/100‑1 (MQ=255)
tAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCAATACATTGCAGA‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCa < 2:262926/100‑1 (MQ=255)
tAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCAATACATTGCAGA‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCa > 2:2363928/1‑100 (MQ=255)
aaCGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCAATACATTGCAGA‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCAt > 2:2207989/1‑100 (MQ=255)
aaCGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCAATACATTGCAGA‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCAt > 1:1253336/1‑100 (MQ=255)
cGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCAATACATTGCAGA‑GTTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCa > 2:1328489/1‑100 (MQ=255)
gCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCAATACATTGCAGA‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAg > 2:1523186/1‑100 (MQ=255)
|
CTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑ACAAAATCGTGCAAATTCAATACATTGCAGA‑ATTTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTC > NC_000913/3705888‑3706082
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
