Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A12 F133 I0 R1
|
200 |
171.4 |
8351354 |
94.3% |
7875326 |
99.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
3,705,985 |
T→C |
24.3% |
intergenic (‑195/+113) |
dppB ← / ← dppA |
dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,705,985 | 0 | T | C | 24.3%
| 517.8
/ 168.6
| 259 | intergenic (‑195/+113) | dppB/dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| Reads supporting (aligned to +/- strand): ref base T (88/108); new base C (60/3); total (148/111) |
| Fisher's exact test for biased strand distribution p-value = 3.94e-14 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.01e-02 |
Only 100 of 264 total aligned reads displayed.
GCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑A‑GAAT‑‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTT > NC_000913/3705887‑3706084
|
ctgagggATGGCGCTGCACGCAGAGGCAGCGCGTAAACGGGTGTACAGATTGTTGTCAAAGTGCGATTTGTGTATGGCGTAGCCCGCGTTAACACCttc < 2:362567/94‑2 (MQ=255)
cGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCgg < 2:2211313/100‑1 (MQ=255)
gATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGcc < 1:3776470/100‑1 (MQ=255)
gATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCGCATCCGGc < 2:1624355/99‑1 (MQ=255)
gATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATAAGGCGTTAACGCCGCATCCGGca < 1:4138406/100‑2 (MQ=37)
tGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGCGCGCTTCGTTTATGCCCGATGCGGCGCTAACGCCTTCCCCGGCCTa > 2:1857371/1‑100 (MQ=25)
ggCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAc > 2:348834/1‑100 (MQ=255)
cgcTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGGTAACGCCTTATCCGGCCTAC‑aa > 1:105899/1‑100 (MQ=255)
tGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAAt < 1:3178730/100‑1 (MQ=255)
cACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCg < 1:3737482/100‑1 (MQ=255)
cGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGACGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTg > 1:2927163/1‑100 (MQ=255)
gCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGc < 2:3907159/100‑1 (MQ=255)
cAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCa < 1:3900806/100‑1 (MQ=255)
ggCCCAGCCCCACCGAGTATACATATCGTTGACAAAGTGCGCTTTGTTTGTGCCGGAGGCGGCGTTACCGACTTATCCGGCCTAC‑ACAACCGTGCa < 2:3158118/96‑1 (MQ=17)
agCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAAtt > 2:1754591/2‑100 (MQ=255)
gCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTc < 2:1387920/100‑1 (MQ=255)
caGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAAt < 2:3087705/100‑1 (MQ=255)
caGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAAt < 1:144595/100‑1 (MQ=255)
aGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATa < 1:3314644/100‑1 (MQ=255)
aGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCAGCCTAC‑AAAATCGTGCAAATTCAATa < 1:2713647/100‑1 (MQ=255)
gcgcCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATAc > 1:2310467/1‑100 (MQ=255)
gcgcCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATAc < 1:3291938/100‑1 (MQ=255)
cGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCGAC‑AAAATCGTGCAAATTCAATACATTGC‑A‑g < 2:1675371/100‑1 (MQ=255)
cGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGAATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTg < 2:2903065/97‑1 (MQ=255)
gggTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑A‑Ga < 1:2768258/100‑1 (MQ=255)
ggTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTCC‑AAAATCGTGCAAATTCAATACATTGc > 2:2491604/1‑96 (MQ=255)
ggTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑A‑Gaa > 1:919460/1‑100 (MQ=255)
ataCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑A‑GAAt‑‑t‑‑‑t < 1:2488960/100‑1 (MQ=255)
taCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGTATTCGGCGTTAACTCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑A‑GAAt‑‑t‑‑‑t‑t > 1:2268689/1‑100 (MQ=255)
cgatctgttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑A‑GAAT‑‑T‑‑‑T‑TC‑‑g < 2:2288436/95‑1 (MQ=255)
gATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑A‑GAAT‑‑T‑‑‑T‑TC‑‑GTa > 1:2568812/1‑100 (MQ=255)
gATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑A‑GAAT‑‑T‑‑‑T‑TC‑‑GTa < 2:4151717/100‑1 (MQ=255)
gATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑A‑GAAT‑‑T‑‑‑T‑TC‑‑GTa > 1:3397320/1‑100 (MQ=255)
tgttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑A‑GAAT‑‑T‑‑‑T‑TC‑‑GTAGGc > 2:2981095/1‑100 (MQ=255)
gttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑A‑GAAT‑‑T‑‑‑T‑TC‑‑GTAGGcc < 1:2124849/100‑1 (MQ=255)
gttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑A‑GAAT‑‑T‑‑‑T‑TC‑‑GTAGGcc > 1:4052532/1‑100 (MQ=255)
tgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑A‑GAAT‑‑T‑‑‑T‑TC‑‑GTAGGCCTg > 2:2378451/1‑100 (MQ=255)
tgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑A‑GAAT‑‑T‑‑‑T‑TC‑‑GTAGGCCTg > 2:857927/1‑100 (MQ=255)
cgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑A‑GAAT‑‑T‑‑‑T‑TC‑‑GTAGGCCTg > 2:281776/2‑100 (MQ=255)
cAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑A‑GAAT‑‑T‑‑‑T‑TC‑‑GTAGGCCTGATa < 1:871671/100‑1 (MQ=255)
cAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑A‑GAAT‑‑T‑‑‑T‑TC‑‑GTAGGCCTGATa < 1:4047399/100‑1 (MQ=255)
cAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑A‑GAAT‑‑T‑‑‑T‑TC‑‑GTAGGCCTGATa < 2:2646751/100‑1 (MQ=255)
aaaGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑A‑GAAT‑‑T‑‑‑T‑TC‑‑GTAGGCCTGATaa > 2:3743007/1‑100 (MQ=255)
gTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑A‑GAAT‑‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCg > 2:2916819/1‑100 (MQ=255)
tGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑A‑GAAT‑‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCgg > 2:75980/1‑100 (MQ=255)
cgcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑A‑GAAT‑‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGa > 1:233793/1‑99 (MQ=255)
cgcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑A‑GAAT‑‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAg < 2:3729640/100‑1 (MQ=255)
cTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑A‑GAAT‑‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAgcg < 1:281779/100‑1 (MQ=255)
attttgtaggCCGGATAAGGCGTTTACGCCGCATCCGGCATAC‑AAAATCGTGCTAATTCAATATATTGC‑A‑GAAA‑‑C‑‑‑C‑TT‑‑GTAGGCCTGATAAGCGTAgcgc > 1:1406379/10‑100 (MQ=17)
ttGTTTATGCCGGATGCGCCGTTAACGCCTTATCCGGCCTAC‑AAACTCGTGCAAATTCAATACATTGC‑A‑GAAT‑‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCa < 1:1157764/100‑1 (MQ=255)
atttgtaggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAATTC‑TGCAAATTCAACAAATTGC‑‑‑GAATC‑C‑‑‑C‑TT‑‑GTAGGCCTGATAAGCGTAGCGCAt > 1:2671933/9‑100 (MQ=18)
tGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑A‑GAAT‑‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCAt < 2:1924994/100‑1 (MQ=255)
ttgtaggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAGATCGTGCAAATTCAATATATTGC‑A‑TGAG‑‑C‑‑‑C‑AC‑‑GTAGGCCTGATAAGCGTAGCGCa > 1:1294540/7‑98 (MQ=17)
tttATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑A‑GAAT‑‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCa < 2:2395782/100‑1 (MQ=255)
gtaggCCGGATAAGGCGCTTACGCCGCATCCGGCCTAC‑AAGAACGTGCAAATTCAACAAATTGTGATGCAT‑‑C‑‑‑C‑T‑‑‑GTAGGCCTGATAAGCGTAGCGCATCa > 1:1023285/5‑100 (MQ=18)
taggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAGTTCGTGCAAATTCAATAAATTGC‑A‑‑ATA‑‑T‑‑‑G‑AC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGc > 2:3794943/4‑100 (MQ=18)
tATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTCC‑A‑GAAT‑‑T‑‑‑T‑TC‑‑GTAGACCTGATAAGAGGAGCGCATCAgg < 2:2567147/100‑1 (MQ=255)
aggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAATCGTGCTAATTCAATATATTGC‑A‑GAAA‑‑C‑‑‑C‑TT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGc > 1:3633099/3‑100 (MQ=17)
aggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAAATGTGCAAATTCAATAAATTGC‑‑‑‑AAT‑‑TCAAC‑TT‑‑GTAGGCCTGATAAGCGCAGCGCATCAgg > 1:3687641/3‑100 (MQ=21)
ggCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAAAGCGTGCAAATTCAATACATTGC‑ATGGGC‑‑C‑‑‑A‑T‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 2:3332077/2‑100 (MQ=17)
ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑GAAATCGTGCTAATTCAATATATTGT‑G‑GGCT‑‑C‑‑‑C‑AC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 2:1516650/2‑100 (MQ=21)
ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAAGCATGAAAATTCAATATATTGC‑A‑GGAG‑‑C‑‑‑T‑GC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:3830939/2‑100 (MQ=18)
ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAAGCATGAAAATTCAATATATTGC‑A‑GGAG‑‑C‑‑‑T‑GC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 2:2057983/2‑100 (MQ=17)
ggCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAACTTTGCAAATTCAATATATTGC‑A‑ATCT‑‑C‑‑‑C‑GT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:3660336/2‑100 (MQ=18)
ggCCGGATAAGGCGTTAACGCCGCATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑A‑GAAT‑‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGc > 1:1366761/2‑99 (MQ=18)
gCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑A‑GAAT‑‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAt > 2:933234/1‑100 (MQ=255)
gCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑A‑GAAT‑‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAt > 1:1754180/1‑100 (MQ=255)
gCCGGATAAGGCGTTTACGCCGCATCTGGCCTAC‑AAATTCTTCCAAATTCAATATATTGC‑A‑GAAA‑‑T‑‑‑C‑AT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaa > 1:1641078/1‑99 (MQ=18)
gCCGGATAAGGCGTTTACGCCGCATCCGGCCTAC‑AAATTC‑TGCAAATTCAACAAATTGC‑‑‑GAATC‑C‑‑‑C‑TT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAtt > 1:743393/1‑100 (MQ=18)
gCCGGATAAGGCGTTCACGCCGCATCCGGCCTAC‑AAAATTGTGTAAATTCAATAAATTGA‑T‑CGAT‑‑C‑‑‑C‑AC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCag > 1:3517283/1‑99 (MQ=21)
ccggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAACTTTGCAAATTCAATATATTGC‑‑‑‑AAT‑‑C‑‑‑T‑CCGTGTAGGCCTGATAAGCGTAGCGCATCAGGCaat > 1:3561992/9‑98 (MQ=18)
ccggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAACCTTGCTAATTCAATATATTGC‑AGGGAC‑‑T‑‑‑A‑T‑‑‑GTAGGCCTGATAAGCATAGCGCATCAGGCagc > 1:2655868/9‑98 (MQ=18)
ccGGATGCGGAGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑A‑GAAT‑‑T‑‑‑T‑TC‑‑GTAGACCTGATAAGCTGAGCGCATAACGCAtt > 2:2547629/1‑100 (MQ=18)
ggataaggcgTTTACGCCGCATCCGGCCTAC‑AAATTC‑TGCAAATTCAACAAATTGC‑‑‑GAAT‑‑C‑‑‑CCTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAtttgc > 1:4005093/7‑98 (MQ=18)
ggataaggcgTTTACGCCGCATCCGGCCTAC‑AAAAATGTGCAAATTCAATAAATTGC‑A‑‑ATTCAA‑‑‑C‑TT‑‑GTAGGCCTGATAAGCGCAGCGCATCAGGCaatt > 1:2392307/7‑97 (MQ=21)
ggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAATCATGAAAATTCAATACATTGC‑A‑AGAT‑‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCacgct > 1:2524187/7‑96 (MQ=17)
ggataaggcgTTCACGCCGCATCCGGCCTAC‑AAAAGCATGAAAATTCAATATATTGC‑A‑GGAG‑‑C‑‑‑T‑GC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 1:535835/7‑100 (MQ=17)
ggataaggcgTTCACGCCGCATCCGACCCAC‑AAAGTCTTGCAAAATCAATAAATTGC‑AGGAAC‑‑G‑‑‑A‑T‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaacta > 1:3390970/7‑96 (MQ=25)
ggacaaggcgTTCACGCCGCATCCGGCCTAC‑AAAATCATGAAAATTCAATACATTGC‑A‑AGAT‑‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCacgct > 2:1197906/7‑96 (MQ=17)
gataaggcgTTCACGCCGCATCCGGCCTACAAAAATCTTGCCAATTCAATATATTGC‑A‑GGAC‑‑C‑‑‑A‑T‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgtttt > 2:2828621/6‑100 (MQ=18)
aTGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑A‑GAAT‑‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttg < 1:3438729/100‑1 (MQ=255)
aTGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑A‑GAAT‑‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttg < 1:2947696/100‑1 (MQ=255)
aggcgTTAACGCCTTTTTTGGCCTAC‑TAAATCATGCAAATTCAATTCATTGC‑A‑GAAT‑‑T‑‑‑T‑TC‑‑GTAGGCCTAATAAGCGGAGCGCATCAGGCATTtttgc > 2:3554594/2‑98 (MQ=18)
ngcgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑A‑GAAT‑‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATCtttgcctt > 2:1041620/2‑100 (MQ=255)
ggcgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑A‑GAAT‑‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctt < 2:11452/100‑1 (MQ=255)
cgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑A‑GAAT‑‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttg < 2:320447/100‑1 (MQ=255)
cgTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑A‑GAAT‑‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttg < 2:481015/100‑1 (MQ=255)
cgTTAACGCCTTATCCGACCAAC‑‑AAATTATGCAACTCCACAATATTGC‑A‑GAAA‑‑T‑‑‑T‑AA‑‑GTAGGACTTATAAGCATAACGCATAAAACAtttattcgttt > 2:329578/1‑90 (MQ=255)
gTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑A‑GAAT‑‑T‑‑‑T‑TT‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttgc < 2:883385/100‑1 (MQ=255)
gTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑A‑GAAT‑‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttgc < 1:3215199/100‑1 (MQ=255)
gTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑A‑GAAT‑‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttgc < 2:1096380/100‑1 (MQ=255)
aaCGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑A‑GAAT‑‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCAt > 1:3365096/1‑100 (MQ=255)
aCGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑A‑GAAT‑‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATc < 1:1718252/100‑1 (MQ=255)
cGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑A‑GAAT‑‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAACGCATCAGGCATTTTTGCCTTTGCCATCa > 2:3967615/1‑100 (MQ=255)
gCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑A‑GAAT‑‑T‑‑‑T‑TC‑‑GTAGGGCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAg < 1:3960608/100‑1 (MQ=255)
gCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑A‑GAAT‑‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCan < 2:535133/100‑2 (MQ=255)
ccTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑A‑GAAT‑‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGt > 1:3105986/1‑100 (MQ=255)
ccTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑A‑GAAT‑‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGt > 1:3015510/1‑100 (MQ=255)
ttATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑A‑GAAT‑‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCt < 1:441288/100‑1 (MQ=255)
tATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑A‑GAAT‑‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCtt < 1:1890908/100‑1 (MQ=255)
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GCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCTAC‑AAAATCGTGCAAATTCAATACATTGC‑A‑GAAT‑‑T‑‑‑T‑TC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTT > NC_000913/3705887‑3706084
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
