Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A12 F204 I0 R1
|
247 |
174.3 |
8556966 |
94.2% |
8060661 |
99.8 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
NC_000913 |
3,705,985 |
T→C |
30.3% |
intergenic (‑195/+113) |
dppB ← / ← dppA |
dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,705,985 | 0 | T | C | 30.3%
| 506.2
/ 264.0
| 313 | intergenic (‑195/+113) | dppB/dppA | dipeptide/heme ABC transporter permease/dipeptide/heme ABC transporter periplasmic binding protein; dipeptide chemotaxis receptor |
| Reads supporting (aligned to +/- strand): ref base T (109/109); new base C (86/9); total (195/118) |
| Fisher's exact test for biased strand distribution p-value = 7.56e-13 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.67e-01 |
Only 100 of 315 total aligned reads displayed.
TGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTT > NC_000913/3705886‑3706084
|
gctgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGAAAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTa > 1:2252936/1‑100 (MQ=255)
ctgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTAt > 1:3246108/1‑100 (MQ=255)
tgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCTTTAACGCCTTacc < 2:2898226/100‑3 (MQ=255)
tgcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATc > 2:2335483/1‑100 (MQ=255)
gcCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGAGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATcc > 1:3039823/1‑100 (MQ=255)
cGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCgg > 2:2086148/1‑100 (MQ=255)
gATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATAAGGCGTTAACGCCGCATCCGGca < 1:3732519/100‑2 (MQ=37)
gATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATAAGGCGTTAACGCCGCATCCGGca < 2:3968923/100‑2 (MQ=37)
aTGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCt < 2:4047473/100‑1 (MQ=255)
aTGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATAAGGCGTTAACGCCGCATCCGGcat < 2:646497/100‑3 (MQ=37)
gcgcTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑a < 2:3414368/100‑1 (MQ=255)
cgttGCACGCAGAGGTACAGCGCCCCCGGGTATATAGATTGTTGTCAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑a < 1:3858042/96‑1 (MQ=21)
cgcTGTTCGCAGAGGCACAGCGCTACCGGGTATACAGATTGGTGACAAAGTGCGCTTTGTTTATTCCGGATAAGGCGTTATCGCCGCATCCGGCAT‑‑aaac < 1:1002361/100‑4 (MQ=21)
gcTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑aaa > 1:1268005/1‑100 (MQ=255)
gcTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑aaa > 2:1877786/1‑100 (MQ=255)
gcTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑aaa > 2:1919390/1‑100 (MQ=255)
cTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑aaaa < 2:3086585/100‑1 (MQ=255)
tGCAGGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAAt < 1:2319343/100‑1 (MQ=255)
tGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAAt < 2:1767500/100‑1 (MQ=255)
tGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAAt < 2:1124123/100‑1 (MQ=255)
aCGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGt > 1:4011915/1‑100 (MQ=255)
cGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTg < 1:1867245/100‑1 (MQ=255)
cGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTg < 1:2980139/100‑1 (MQ=255)
cGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTg < 1:147500/100‑1 (MQ=255)
gCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGc < 2:1994244/100‑1 (MQ=255)
ggCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAAtt > 1:2217753/1‑100 (MQ=255)
ggCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAAtt > 2:2262042/1‑100 (MQ=255)
gacacaGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAAtt > 2:3654339/3‑100 (MQ=255)
gtgcaGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGTTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAAGCGTGCa < 1:3399583/92‑1 (MQ=255)
cacaGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCa > 2:4241280/1‑100 (MQ=255)
caGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAAt < 2:1035893/100‑1 (MQ=255)
aGCGCCACCGGGTCTACAGATTGTTGACAAAGTGCGCCTTGTTTATACCAGATTCGGCGTTCACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTTAATa > 1:462295/1‑100 (MQ=17)
aCCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTG‑c < 2:2502954/100‑1 (MQ=255)
taCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑At‑ttt < 2:3308850/100‑1 (MQ=255)
aCAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑TTTc > 1:577399/1‑100 (MQ=255)
cAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑TTTC‑‑g < 2:2109352/100‑1 (MQ=255)
cAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑TTTC‑‑g < 2:3196924/100‑1 (MQ=255)
aGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGAGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑At‑ttt > 1:407070/1‑97 (MQ=255)
gcataaaCAAAGCGCACTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑TTTC‑‑GTAg > 2:2848951/7‑99 (MQ=17)
gttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑TTTC‑‑GTAGGcc < 1:2871173/100‑1 (MQ=255)
gttgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑TTTC‑‑GTAGGcc < 1:644276/100‑1 (MQ=255)
tgACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑TTTC‑‑GTAggagat > 2:1686246/1‑96 (MQ=255)
gACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑TTTC‑‑GTAGGCCTg < 2:1370459/99‑1 (MQ=255)
aGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑TTTC‑‑GTAGGCCTGATaa > 1:3012156/1‑98 (MQ=255)
gTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCg < 1:1978695/100‑1 (MQ=255)
gTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCg > 2:2175300/1‑100 (MQ=255)
tGCGCGTTGTTTATGCCGGATTCGGAGTTATCGGCTTATCTGGCCT‑‑AC‑AAAATCGTGCAAACTCAAGACATTG‑CA‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCgg < 1:2624705/100‑1 (MQ=18)
cgcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAg < 2:3472903/100‑1 (MQ=255)
gcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAgc < 1:1911322/100‑1 (MQ=255)
gcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAgc > 2:4162666/1‑100 (MQ=255)
gcTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAgc < 1:1567754/100‑1 (MQ=255)
cTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAgcg < 1:1531116/100‑1 (MQ=255)
cTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAgcg > 2:547377/1‑100 (MQ=255)
cTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAgcg < 1:2047092/100‑1 (MQ=255)
nctttgtaggCCGGATAAGGCGTTAACGCCGCATCAGGCATTAAC‑AAAGTCCTGCAGATTCAATATATTG‑CA‑GG‑TA‑CTGC‑‑GTAGGCCTGATAAGCGTAgc > 1:3130058/10‑100 (MQ=9)
attttgtaggCCGGATAAGGCGTTAACGCCGCATCCGGCATAAAC‑AAAATCGTGCAAATTCAATAAATTG‑CA‑GA‑AT‑TTCC‑‑GTAGGCATGCTAAGCGGa > 1:3543556/10‑98 (MQ=2)
ttGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCa < 1:3805391/100‑1 (MQ=255)
tttgtaggCCGGATAAGGCGTTTACGCCGCATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAACATATTG‑CA‑AT‑TC‑TCTT‑‑GTAGGCCTGATAAGCGTAGCGCAt > 2:27686/8‑100 (MQ=18)
tGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCAt > 1:1600225/1‑100 (MQ=255)
tGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCAt > 1:2553322/1‑100 (MQ=255)
tgtaggCCGGATAAGGCGCTTACGCCGCATCCGGCCT‑‑AC‑AAGAACGTGCAAATTCAACAAATTGTGATGC‑AT‑CCT‑‑‑GTAGGCCTGATAAGCGTAGCGCATc > 2:115490/6‑100 (MQ=21)
gtaggCCGGATAAGGCGTTTACGCCGCATCCGGCCT‑‑AC‑AAAAGCATGCAAATTCAATATATTG‑CA‑GA‑GT‑TCAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAg > 2:2557763/5‑100 (MQ=17)
gtaggCCGGATAAGGCGTTTACGCCGCATCCGGCAT‑‑AC‑AAATTC‑TGCAAATTCAACAAATTG‑C‑‑GA‑ATCCCTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAgg > 2:679164/5‑100 (MQ=18)
taggCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑‑ACAAAAATCTTGCCAATTCAATATATTG‑CA‑GG‑AC‑CAT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAgg > 2:251099/4‑100 (MQ=18)
taggCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑‑AC‑AAAATCGCTTAAATTCAATATATTG‑CA‑CC‑AT‑CCTC‑‑GTAGGCCTGATAAGCGTAGCGCATCAgg > 2:3502878/4‑100 (MQ=21)
taggCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑‑AC‑‑AAATCATGCAAATCCAAAATATTG‑CA‑GG‑AG‑TTAT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGc > 1:3457958/4‑100 (MQ=21)
tATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAGTCGTGCAAATTCACTACATTG‑AG‑GA‑AT‑TTAC‑‑GTAGGCCTGATAAGGGGAGCGCATCAgg > 1:861178/1‑100 (MQ=17)
tATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAgg < 1:1429360/100‑1 (MQ=255)
tATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAgg > 2:184129/1‑100 (MQ=255)
aggCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑‑ACAAAAATCTTGCCAATTCAATATATTG‑CA‑GG‑AC‑CAT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGc > 2:384718/3‑100 (MQ=18)
aggCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑‑ACAAAAATCTTGCCAATTCAATATATTG‑CA‑GG‑AC‑CAT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGc > 2:3253923/3‑100 (MQ=18)
aTGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGc < 1:1191859/100‑1 (MQ=255)
ggCCGGATAAGGCGTTTACGCCGCATCCGGCCT‑‑AC‑AAAATCGTGCTAATTCAATATATTG‑CA‑GA‑AA‑CCTT‑‑CTAGGCCTGATAAGCGTAGCGCATCAGGCa > 1:2564641/2‑100 (MQ=17)
ggCCGGATAAGGCGTTCACGCCGCATCCGGCCT‑‑AC‑AAAACTTTGCAAATTCAATATATTG‑C‑‑‑A‑AT‑CTCCGTGTAGGCCTGATAAGCGTAGCGCATCAGGCa > 2:2640927/2‑100 (MQ=18)
gtcggataaggcgTTCACGCCGCATCCGACCC‑‑AC‑AAAGTCTTGCAAAATCAATAAATTG‑CA‑GG‑AA‑CGAT‑‑GTAGGCCTGATAAGCATAGCGCATCAGGCaa > 1:3884023/10‑99 (MQ=21)
gCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAt > 2:4083402/1‑100 (MQ=255)
gCCGGATAAGGCGTTTACGCCGCATCCGGCCT‑‑AC‑AAATTC‑TGCAAATTCAACAAATTG‑C‑‑GA‑ATCCCTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAtt > 1:1646114/1‑100 (MQ=18)
gCCGGATAAGGCGTTTACGCCGCATCCGGCCT‑‑AC‑AAAATCGTGCTAATTCAATATATTG‑CA‑GA‑AA‑CCTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCag > 2:2704278/1‑99 (MQ=18)
cggataaggcgTTTACGCCGCATCCGGCCT‑‑AC‑AAAAGCATGCAAATTCAATATATTG‑CA‑GA‑GT‑TCAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgtt > 1:1786424/8‑100 (MQ=17)
ggataaggcgTTTACGCCGCATCCGGCCT‑‑AC‑AAATTC‑TGCAAATTCAACAAATTG‑C‑‑GA‑ATCCCTT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAtttgc > 2:2957040/7‑98 (MQ=21)
ggataaggcgTTTACGCCGCATCCGGCCT‑‑AC‑AAAAGCATGCAAATTCAATATATTG‑CA‑GA‑GT‑TCAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 1:3491711/7‑100 (MQ=17)
ggataaggcgTTCACGCCGCATCCGGCCT‑‑ACAAAAATCTTGCCAATTCAATATATTG‑CA‑GG‑AC‑CAT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAgttt > 1:1127275/7‑100 (MQ=18)
ggataaggcgTTCACGCCGCATCCGGCCT‑‑AC‑AAAGTCGTATAAATTCAATGTATTG‑CA‑GT‑TT‑ATTG‑‑GTAGGCCTGATAAGCGCAGCGCATCAGGCaatct > 2:1312661/7‑96 (MQ=25)
ggataaggcgTTCACGCCGCATCCGGCCT‑‑AC‑AAAATCGCTTAAATTCAATATATTG‑CA‑CC‑AT‑CCTC‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCaattc > 1:280916/7‑96 (MQ=21)
ggataaggcgTTCACGCCGCATCCGGCCT‑‑AC‑AAAAACATGCAAATTCAATAGATTG‑CA‑GAGAT‑TAT‑‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAattt > 2:494128/7‑100 (MQ=17)
ggataaggcgTTCACGCCGCATCCGGCCT‑‑AC‑AAAAACATGCAAATTCAATAGATTG‑CA‑GA‑GA‑TTAT‑‑GTAGGCCTGATAAGCGTAGCGCATCAGGCAattt > 1:1320148/7‑100 (MQ=17)
ggataaggcgTTAACGCCGCACCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCAtttt > 2:3754633/7‑100 (MQ=18)
gataacgcgTTTACGCCGCATCCGGCCT‑‑AC‑AAAATCGTGCTAATTCAATATATTG‑CC‑GA‑AA‑CCCT‑‑GTAGGCCTCAACAGCGGCGCGGATCACGc > 1:2085452/7‑94 (MQ=9)
aTGCGGCGTTAACGTCTTATCCGGCCT‑‑AC‑AAAATCGGGCAAATTCAATACATTG‑CA‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttg < 1:2836547/100‑1 (MQ=255)
taaggcgTTCACGCCGCATCCGGCCT‑‑AC‑AAGATCGTGCAAATTCAATATATTG‑CA‑TG‑AG‑CCAC‑‑GTAGGCCTGATAAGCGTAGCGCATCAAGCAGTtttgc > 2:1971434/4‑100 (MQ=17)
tGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgc > 2:2425261/1‑100 (MQ=255)
tGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgc < 1:813497/100‑1 (MQ=255)
cggcgTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑TTTC‑‑GTAGGCCTGATACGCGGAGCGCATCAGGCATTtttgcct < 2:2605978/100‑1 (MQ=255)
cgTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttg < 1:2889977/100‑1 (MQ=255)
gTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttgc > 2:771379/1‑100 (MQ=255)
ttAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTtttgcctttgc < 2:871169/99‑1 (MQ=255)
accGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCAt > 2:2888554/3‑100 (MQ=255)
cGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCa > 2:1487354/1‑100 (MQ=255)
gCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAg > 2:1515926/1‑100 (MQ=255)
cTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTc < 2:1605103/100‑1 (MQ=255)
|
TGCTGCCGGATGGCGCTGCACGCAGAGGCACAGCGCCACCGGGTATACAGATTGTTGACAAAGTGCGCTTTGTTTATGCCGGATGCGGCGTTAACGCCTTATCCGGCCT‑‑AC‑AAAATCGTGCAAATTCAATACATTG‑CA‑GA‑AT‑TTTC‑‑GTAGGCCTGATAAGCGGAGCGCATCAGGCATTTTTGCCTTTGCCATCAGTCTT > NC_000913/3705886‑3706084
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
