Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A12 F133 I0 R1	200	171.4	8351354	94.3%	7875326	99.8

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	freq	annotation	gene	description
RA	NC_000913	1,580,094	C→T	100%	D233N (GAT→AAT)	ydeM ←	putative YdeN‑specific sulfatase‑maturating enzyme

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	1,580,094	0	C	T	100.0%	426.8 / NA	124	D233N (GAT→AAT)	ydeM	putative YdeN‑specific sulfatase‑maturating enzyme
Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (59/65); total (59/65)

Only 100 of 124 total aligned reads displayed.

TCCTTGCAGGACTCCTGGAAAATACAACTGGTATGCCCATTCCCCAAAAAACGGCTGACAAAGCTTTCAAACTGACGGATGAAAATTTCACCCACATCGTTTTTAACCCATTGCATAAAAATGGTTGACATAAACTTGCCATAAGCCGTGGGAGGCACAGAAAAATCAATGATACGGAATGTGTTCTCACTAT  >  NC_000913/1579997‑1580189

tCCTTGCAGGACTCCTGGAAAATACTCATGGTATGCCCATTCCGCAAAAAACGGCTGACAAAGCTTTCAAACTGACGGATGAAAATTTCACCCACATTGt                                                                                               <  2:3535390/100‑1 (MQ=255)

  cTTGCAGGACTCCTGGAAAATACAACTGGTATGCCAATTCCCCAAAAAACGGCTGACAACGGTTTCAAACTTACGGATGAAAAGTTCACCCACATTGtt                                                                                              >  2:1622518/1‑99 (MQ=255)

     gCAGGACTCCTGGAAAATACAACTGGTATGCCCATTCCCCAAAAAACGGCTGACAAAGCTTTCAAACTGACGGATGAAAATTTCACCCACATTGTTTTTa                                                                                          >  2:618149/1‑100 (MQ=255)

      cAGGACTCCTGGAAAATACAACTGGTATGCAAAAAAAAAAAAAAACGGCTGACAAAGCTTTCAAACTGACGGATGAAAATTTCACCCACATTGTTTTTaa                                                                                         <  2:3938344/100‑1 (MQ=255)

       aGGACTCCTGGAAAATACAACTGGTATGCCCATTCCCCAAAAAACGGCTGACAAAGCTTTCAAACTGACGGATGAAAATTTCACCCACATTGTTTTTAAc                                                                                        <  2:3682961/100‑1 (MQ=255)

       aGGACTCCTGGAAAATACAACTGGTATGCCCATTCCCCAAAAAACGGCTGACAAAGCTTTCAAACTGACGGATGAAAATTTCACCCACATTGTTTTTAAc                                                                                        <  2:29400/100‑1 (MQ=255)

       aGGACTCCTGGAAAATACAACTGGTATGCCCATTCCCCAAAAAACGGCTGACAAAGCTTTCAAACTGACGGATGAAAATTTCACCCACATTGTTTTTAAc                                                                                        <  1:3187952/100‑1 (MQ=255)

       aGGACTCCTGGAAAATACAACTGGTATGCCCATTCCCCAAAAAACGGCTGACAAAGCTTTCAAACTGACGGATGAAAATTTCACCCACATTGTTTTTAAc                                                                                        <  1:256572/100‑1 (MQ=255)

        ggACTCCTGGAAAATACAACTGGTATGCCCATTCCCCAAAAAACGGCTGACAAAGCTTTCAAACTGACGGATGAAAATTTCACCCACATTGTTTTTAAcc                                                                                       <  1:3746656/100‑1 (MQ=255)

          aCTCCTGGAAAATACAACTGGTATGCCCATTCCCCAAAAAACGGCTGACAAAGCTTTCAAACTGACGGATGAAAATTTCACCCACATTGTTTTTAACCCa                                                                                     >  2:1373669/1‑100 (MQ=255)

           cTCCTGGAAAATACAACTGGTATGCCCATTCCCCAAAAAACGGCTGACAAAGCTTTCAAACTGACGGATGAAAATTTCACCCACATTGTTTTTAACCCAt                                                                                    <  1:2766180/100‑1 (MQ=255)

            tCCTGGAAAATACAACTGGTATGCCCATTCCCGAAAAAACGGCTGACAAAGCTTTCAAACTGACGGATGAAAATTTCACCCACATTGTTTTTAACCCAtt                                                                                   >  1:3956170/1‑100 (MQ=255)

             ccTGGAAAATACAACTGGTATGCCCATTCCCCAAAAAACGGCTGACAAAGCTTTCAAACTGACGGATGAAAATTTCACCCACATTGTTTTTAACCCATTg                                                                                  <  1:1256260/100‑1 (MQ=255)

             ccTGGAAAATACAACTGGTATGCCCATTCCCCAAAAAACGGCTGACAAAGCTTTCAAACTGACGGATGAAAATTTCACCCACATTGTTTTTAACCCATTg                                                                                  >  1:3635162/1‑100 (MQ=255)

             ccTGGAAAATACAACTGGTATGCCCATTCCCCAAAAAACGGCTGACAAAGCTTTCAAACTGACGGATGAAAATTTCACCCACATTGTTTTTAACCCATTg                                                                                  >  1:1731137/1‑100 (MQ=255)

             ccTGGAAAATACAACTGGTATGCCCATTCCACAAAAAACGGCTGACAAAGCTTTCAAACTGACGGATGAAAATTTCACCCACATTGTTTTTAACCCATTg                                                                                  <  2:1284912/100‑1 (MQ=255)

              cTGGAAAATACAACTGGTATGCCCATTCCCCAAAAAACGGCTGACAAAGCTTTCAAACTGACGGATGAAAATTTCACCCACATTGTTTTTAACCCATTGc                                                                                 <  1:3591079/100‑1 (MQ=255)

              cTGGAAAATACAACTGGTATGCCCATTCCCCAAAAAACGGCTGACAAAGCTTTCAAACTGACGGATGAAAATTTCACCCACATTGTTTTTAACCCATTGc                                                                                 >  1:1684592/1‑100 (MQ=255)

              cTGGAAAATACAACTGGTATGCCCATTCCCCAAAAAACGGCTGACAAAGCTTTCAAACTGACGGATGAAAATTTCACCCACATTGTTTTTAACCCATTGc                                                                                 >  2:3030668/1‑100 (MQ=255)

              cTGGAAAATACAACTGGTATGCCCATTCCCCAAAAAACGGCTGACAAAGCTTTCAAACTGACGGATGAAAATTTCACCCACATTGTTTTTAACCCATTGc                                                                                 >  1:868577/1‑100 (MQ=255)

               tGGAAAATACAACTGGTATGCCCATTCCCCAAAAAACGGCTGACAAAGCTTTCAAACTGACGGATGAAAATTTCACCCACATTGTTTTTAACCCATTGCa                                                                                >  1:3505946/1‑100 (MQ=255)

               tGGAAAATACAACTGGTATGCCCATTCCCCAAAAAACGGCTGACAAAGCTTTCAAACTGACGGATGAAAATTTCACCCACATTGTTTTTAACCCATTGCa                                                                                <  2:1833824/100‑1 (MQ=255)

                   aaaTACAACTGGTATGCAAATAAAAAAAAAAACGGCTGACAAAGCTTTCAAACTGACGGATGAAAATTTCACCCACATTGTTTTTAACCCATTGCATaaa                                                                            <  2:2937451/100‑1 (MQ=255)

                     aTACAACTGGTATGCCCATTCCCCAAAAAACGGCTGACAAAGCTTTCAAACTGACGGATGAAAATTTCACCCACATTGTTTTTAACCCATTGCATaaaaa                                                                          <  1:2671071/100‑1 (MQ=255)

                     aTACAACTGGTATGCCCATTCCCCAAAAAACGGCTGACAAAGCTTTCAAACTGACGGATGAAAATTTCACCCACATTGTTTTTAACCCATTGCATaaaaa                                                                          <  1:1291507/100‑1 (MQ=255)

                        cAACTGGTATGCCCATTCCCCAAAAAACGGCTGACAAAGCTTTCAAACTGACGGATGAAAATTTCACCCACATTGTTTTTAACCCATTGCATAAAAATgg                                                                       >  1:907931/1‑100 (MQ=255)

                        cAACTGGTATGCCCATTCCCCAAAAAACGGCTGACAAAGCTTTCAAACTGACGGATGAAAATTTCACACACATTGTTTTTAACCCATTGCATAAAAATgg                                                                       >  1:1875680/1‑100 (MQ=255)

                         aaCTGGTATGCCCATTCCCCAAAAAACGGCTGACAAAGCTTTCAAACTGACGGATGAAAATTTCACCCACATTGTTTTTAACCCATTGCATAAAAATGGt                                                                      >  1:270938/1‑100 (MQ=255)

                         aaCTGGTATGCCCATTCCCCAAAAAACGGCTGACAAAGCTTTCAAACTGACGGATGAAAATTTCACCCACATTGTTTTTAACCCATTGCATAAAAATGGt                                                                      <  1:3758539/100‑1 (MQ=255)

                          aCTGGTATGCCCATTCCCCAAAAAACGGCTGACAAAGCTTTCAAACTGACGGATGAAAATTTCACCCACATTGTTTTTAACCCATTGCATAAAAATGGtt                                                                     <  1:390582/100‑1 (MQ=255)

                          aCTGGTATGCCCATTCCCCAAAAAACGGCTGACAAAGCTTTCAAACTGACGGATGAAAATTTCACCCACATTGTTTTTAACCCATTGCATAAAAATGGtt                                                                     <  1:1858976/100‑1 (MQ=255)

                          aCTGGTATGCCCATTCCCCAAAAAACGGCTGACAAAGCTTTCAAACTGACGGATGAAAATTTCACCCACATTGTTTTTAACCCATTGCATAAAAATGGtt                                                                     >  1:3851392/1‑100 (MQ=255)

                          aCTGGTATGCCCATTCCCCAAAAAACGGCTGACAAAGCTTTCAAACTGACGGATGAAAATTTCACCCACATTGTTTTTAACCCATTGCATAAAAATGGtt                                                                     >  1:2147595/1‑100 (MQ=255)

                          aCTGGTATGCCCATTCCCCAAAAAACGGCTGACAAAGCTTTCAAACTGACGGATGAAAATTTCACCCACATTGTTTTTAACCCATTGCATAAAAATGGtt                                                                     >  1:2589058/1‑100 (MQ=255)

                           cTGGTATGCACATGCCCCAAAAAACGGCTGACAAAGCTTTCAAACTGACGGATGAAAATTTCACCCACATTGTTTTTAACCCATTGCATAAAAATGGTTg                                                                    <  2:244412/100‑1 (MQ=255)

                            tGGTATGCCCATTCCCCAAAAAACGGCTGACAAAGCTTTCAAACTGACGGATTAAAATTTCACCCACATTGTTTTTAACCCATTGCATAAAAATGGTTGa                                                                   <  1:709397/100‑1 (MQ=255)

                            tGGTATGCCCATTCCCCAAAAAACGGCTGACAAAGCTTTCAAACTGACGGATGAAAATTTCACCCACATTGTTTTTAACCCATTGCATAAAAATGGt                                                                      <  2:3635135/97‑1 (MQ=255)

                            tGGTATGCCCATTCCCCAAAAAACGGCTGACAAAGCTTTCAAACTGACGGATGAAAATTTCACCCACATTGTTTTTAACCCATTGCATAAAAATGGTTGa                                                                   >  1:2738117/1‑100 (MQ=255)

                             ggTATGCCCATTCCCCAAAAAACGGCTGACAAAGCTTTCAAACTGACGGATGAAAATTTCACCCACATTGTTTTTAACCCATTGCATAAAAATGGTTGAc                                                                  >  2:3972238/1‑100 (MQ=255)

                             ggTATGCCCATTCCCCAAAAAACGGCTGACAAAGCTTTCAAACTGACGGATGAAAATTTCACCCACATTGTTTTTAACCCATTGCATAAAAATGGTTGAc                                                                  <  2:2696289/100‑1 (MQ=255)

                             ggTATGCCCATTCCCCAAAAAACGGCTGACAAAGCTTTCAAACTGACGGATGAAAATTTCACCCACATTGTTTTTAACCCATTGCATAAAAATGGTTGAc                                                                  <  2:2896633/100‑1 (MQ=255)

                             ggTATGCCCATTCCCCAAAAAACGGCTGACAAAGCTTTCAAACTGACGGATGAAAATTTCACCCACATTGTTTTTAACCCATTGCATAAAAATGGTTGAc                                                                  >  1:1498066/1‑100 (MQ=255)

                              gTATGCCCATTCCCCAAAAAACGGCTGACAAAGCTTTCAAACTGACGGATGAAAATTTCACCCACATTGTTTTTAACCCATTGCATAAAAATGGTTGACa                                                                 <  2:2139997/100‑1 (MQ=255)

                                 tGCCCATTCCCCAAAAAACGGCTGACAAAGCTTTCAAACTGACGGATGAAAATTTCACCCACATTGTTTTTAACCCATTGCATAAAAATGGTTGACAtga                                                              >  1:3395221/1‑98 (MQ=255)

                                  gCCCATTCCCCAAAAAACGGCTGACAAAGCTTTCAAACTGACGGATGAAAATTTCACCCACATTGTTTTTAACCCATTGCATAAAAATGGTTGACAtgaa                                                             >  1:3472702/1‑97 (MQ=255)

                                   cccATTCCCCAAAAAACGGCTGACAAAGCTTTCAAACTGACGGATGAAAATTTCACCCACATTGTTTTTAACCCATTGCATAAAAATGGTTGACATAAAc                                                            <  1:3492012/100‑1 (MQ=255)

                                   cccATTCCCCAAAAAACGGCTGACAAAGCTTTCAAACTGACGGATGAAAATTTCACCCACATTGTTTTTAACCCATTGCATAAAAATGGTTGACATAAAc                                                            >  1:2729861/1‑100 (MQ=255)

                                    ccATTCCCCAAAAAACGGCTGACAAAGCTTTCAAACTGACGGATGAAAATTTCACCCACATTGTTTTTAACCCATTGCATAAAAATGGTTGACATAAACt                                                           <  2:2283407/100‑1 (MQ=255)

                                    ccATTCCCCAAAAAACGGCTGACAAAGCTTTCAAACTGACGGATGAAAATTTCACCCACATTGTTTTTAACCCATTGCATAAAAATGGTTGACATAAACt                                                           >  1:715835/1‑100 (MQ=255)

                                    ccATTCCCCAAAAAACGGCTGACAAAGCTTTCAAACTCACGGATGAAAATTTCACCCACATTGTTTTTAACCCATTGCATAAAAATGGTTGACATAAACt                                                           <  2:2805150/100‑1 (MQ=255)

                                     cATTCCCCAAAAAACGGCTGACAAAGCTTTCAAACTGACGGATGAAAATTTCACCCACATTGTTTTTAACCCATTGCATAAAAATGGTTGACATAAACtt                                                          >  1:3565130/1‑100 (MQ=255)

                                     cATTCCCCAAAAAACGGCTGACAAAGCTTTCAAACTGACGGATGAAAATTTCACCCACATTGTTTTTAACCCATTGCATAAAAATGGTTGACATAAACtt                                                          <  1:2368642/100‑1 (MQ=255)

                                      aTTCCCCAAAAAACGGCTGACAAAGCTTTCAAACTGACGGATGAAAATTTCACCCACATTGTTTTTAACCCATTGCATAAAAATGGTTGACATGAACTTg                                                         <  1:1242278/100‑1 (MQ=255)

                                      aTTCCCCAAAAAACGGCTGACAAAGCTTTCAAACTGACGGATGAAAATTTCACCCACATTGTTTTTAACCCATTGCATAAAAATGGTTGACATAAACTTg                                                         <  2:3934157/100‑1 (MQ=255)

                                        tCCCCAAAAAACGGCTGACAAAGCTTTCAAACTGACGGATGAAAATTTCACCCACATTGTTTTTAACCCATTGCATAAAAATGGTTGACATAAACTTGcc                                                       <  2:1668141/100‑1 (MQ=255)

                                        tCCCCAAAAAACGGCTGACAAAGCTTTCAAACTGACGGATGAAAATTTCACCCACATTGTTTTTAACCCATTGCATAAAAATGGTTGACATAAACTTGcc                                                       <  1:3694681/100‑1 (MQ=255)

                                         tctcAAAAAACGGCTGACAAAGCTTTCAAACTGACGGATGAAAATTTCACCCACATTGTTTTTAACCCATTGCATAAAAATGGTTGACATAAACTTGCCa                                                      <  2:4097829/97‑1 (MQ=255)

                                         ccccAAAAAACGGCTGACAAAGCTTTCAAACTGACGGATGAAAATTTCACCCACATTGTTTTTAACCCATTGCATAAAAATGGTTGACATAAACTTGCCa                                                      >  2:188342/1‑100 (MQ=255)

                                         ccccAAAAAACGGCTGACAAAGCTTTCAAACTGACGGATGAAAATTTCACCCACATTGTTTTTAACCCATTGCATAAAAATGGTTGACATAAACTTGCCa                                                      >  2:2509626/1‑100 (MQ=255)

                                          cccAAAAAACGGCTGACAAAGCTTTCAAACTGACGGATGAAAATTTCACCCACATTGTTTTTAACCCATTGCATACAAATGGTTGACATAAAATTGCCAt                                                     >  1:3078173/1‑100 (MQ=255)

                                          cccAAAAAACGGCTGACAAAGCTTTCAAACTGACGGATGAAAATTTCACCCACATTGTTTTTAACCCATTGCATAAAAATGGTTGACATGAACTTGCCAt                                                     >  1:3339039/1‑100 (MQ=255)

                                           ccAAAAAACGGCTGACAAAGCTTTCAAACTGACGGATGAAAATTTCACCCACATTGTTTTTAACCCATTGCATAAAAATGGTTGACATAAACTTGCCATa                                                    >  1:2465664/1‑100 (MQ=255)

                                           ccAAAAAACGGCTGACAAAGCTTTCAAACTGACGGATGAAAATTTCACCCACATTGTTTTTAACCCATTGCATAAAAATGGTTGACATAAACTTGCCATa                                                    >  1:471864/1‑100 (MQ=255)

                                            cAAAAAACGGCTGACAAAGCTTTCAAACTGACGGATGAAAATTTCACCCACATTGTTTTTAACCCATTGCATAAAAATGGTTGACATAAACTTGCCaaga                                                   >  1:4097861/1‑97 (MQ=255)

                                            cAAAAAACGGCTGACAAAGCTTTCAAACTGACGGATGAAAATTTCACCCACATTGTTTTTAACCCATTGCATAAAAATGGTTGACATAAACTTGCCATaa                                                   >  2:1000452/1‑100 (MQ=255)

                                              aaaaaCGGCTGACAAAGCTTTCAAACTGACGGATGAAAATTTCACCCACATTGTTTTTAACCCATTGCATAAAAATGGCTGACATAAACTTGCCATAAGc                                                 >  2:2847688/1‑100 (MQ=255)

                                                   cGGCTGACAAAGCTTTCAAACTGACGGATGAAAATTTCACCCACATTGTTTTTAACCCATTGCATAAAAATGGTTGACATAAACTTGCCATAAGCCGt                                              >  2:185625/1‑98 (MQ=255)

                                                   cGGCTGACAAAGCTTTCAAACTGACGGATGAAAATTTCACCCACATTGTTTTTAACCCATTGCATAAAAATGGTTGACATAAACTTGCCATAAGCCGTgg                                            <  1:128478/100‑1 (MQ=255)

                                                    ggCTGACAAAGCTTTCAAACTGACGGATGAAAATTTCACCCACATTGTTTTTAACCCATTGCATAAAAATGGTTGACATAAACTTGCCATAAGCCGTggg                                           >  1:1289417/1‑100 (MQ=255)

                                                       tGACAAAGCTTTCAAACTGACGGATGAAAATTTCACCCACATTGTTTTTAACCCATTGCATAAAAATGGTTGACATAAACTTGCCATAAGCCGTGGGAgg                                        <  1:3591353/100‑1 (MQ=255)

                                                       tGACAAAGCTTTCAAACTGACGGAGGAAAATTTCACCCACATTGGTCTTAACCCATTGCGTAAAAATGGTTTACATAAACTTGCCATAGGCCGTGGGAgg                                        <  2:1216360/100‑1 (MQ=255)

                                                        gACAAAGCTTTCAAACTGACGGATGAAAATTTCACCCACATTGTTTTTAACCCATTGCATAAAAATGGTTGACATGAACTTGCCATAAGCCGTGGGAGGc                                       <  1:210167/100‑1 (MQ=255)

                                                        gACAAAGCTTTCAAACTGACGGATGAAAATTTCACCCACATTGTTTTTAACCCATTGCATAAAAATGGTTGACATAAACTTGCCATAAGCCGTGGGAGGc                                       <  1:2509641/100‑1 (MQ=255)

                                                         aCAAAGCTTTCAAACTGACGGATGAAAATTTTATCCACATTGTTTTTAAAAAAAAAAAAAAAAATGGTTGACATAAACTTGCCATAAGCCGTGGGAGGc                                       <  2:2319353/99‑1 (MQ=255)

                                                         aCAAAGCTTTCAAACTGACGGATGAAAATTTCACCCACATTGTTTTTAACCCATTGCATAAAAATGGTTGACATAAACTTGCCATAAGCCGTGGGAGGca                                      <  2:1022756/100‑1 (MQ=255)

                                                          cAAAGCTTTCAAACTGACGGATGAAAATTTCACCCACATTGTTTTTAACCCATTGCATAAAAATGGTTGACATAAACTTGCCATAAGCCGTGGGAGGcac                                     >  1:419443/1‑100 (MQ=255)

                                                          cAAAGCTTTCAAACTGACGGATGAAAATTTCACCCACATTGTTTTTAACCCATTGCATAAAAATGGTTGACATAAACTTGCCATAAGCCGTGGGAGGcac                                     >  1:962810/1‑100 (MQ=255)

                                                            aaGCTTTCAAACTGACGGATGAAAATTTCACCCACATTGTTTTTAACCCATTGCATAAAAATGGTTGACATAAACTTGCCATAAGCCGTGGGAGGCACAg                                   >  1:2107611/1‑100 (MQ=255)

                                                            aaGCTTTCAAACTGACGGATGAAAATTTCACCCACATTGTTTTTAACCCATTGCATAAAAATGGTTGACATAAACTTGCCATAAGCCGTGGGAGGCACAg                                   <  2:2041895/100‑1 (MQ=255)

                                                            aaGCTTTCAAACTAACGGATGAAAATTTCACGCACATTGTTTTTAACCCATTGCATAAAAATGGTTGACATAAACTTGCCATAAGCCGTGGGAGGCACAg                                   >  1:2813667/1‑100 (MQ=255)

                                                               cTTTCAAACTGACGGATGAAAATTTCACCCACATTGTTTTTAACCCATTGCATAAAAATGGTTGACATGAACTTGCCATAAGCCGTGGGAGGCACAGaaa                                >  1:2255556/1‑100 (MQ=255)

                                                               cTTTCAAACTGACGGATGAAAATTTCACCCACATTGTTTTTAACCCATTGCATAAAAATGGTTGACATAAACTTGCCATAAGCCGTGGGAGGCACAGaaa                                >  2:457966/1‑100 (MQ=255)

                                                                    aaaCTGACGGATGAAAATTTCACCCACATTGTTTTTAACCCATTGCATAAAAATGGTTGACATAAACTTGCCATAAGCCGTGGGAGGCACAGAAAAATCa                           <  2:1599438/100‑1 (MQ=255)

                                                                           cGGATGAAAATTTCACCCACATTGTTTTTAACCCATTGCATAAAAATGGTTGACATAAACTTGCCATAAGCCGTGGGAGGCACAGAAAAATCAATGATAc                    >  1:1567458/1‑100 (MQ=255)

                                                                            aaataaaaaTTTCTCGTACATTTTGTTTAACCCATTGCATAAAAATGGCTAACATAAACTTGCCATAAGCCGTGAGTTTCACAGAAAAATCAATGacac                    <  2:4085912/94‑1 (MQ=255)

                                                                               tGAAAATTTCACCCACATTGTTTTTAACCCATTGCATAAAAATGGTTGACATGAACTTGCCATAAGCCGTGGGAGGCACAGAAAAATCAATGATACGGaa                >  1:2379546/1‑100 (MQ=255)

                                                                                gAAAATTTCACCCACATTGTTTTTAACCCATTGCATAAAAATGGTTGACGTAAACTTGCCATAAGCCGTGGGAGGCACAGAAAAATCAATGATACGGAAt               >  1:2116452/1‑100 (MQ=255)

                                                                                 aaaaTTTCACCCACATTGTTTTTAACCCATTGCATAAAAATGGTTGACATAAACTTGCCATAAGCCGTGAGAGGCACAGAAAAATCAATGATACGGAAtg              >  2:3108142/1‑100 (MQ=255)

                                                                                    aTTTCACCCACATTGTTTTTAACCCATTGCATAAAAATGGTTGACATAAACTTGCCATAAGCCGTGGGAGGCACAGAAAAATCAATGATACGGAATgtgt           >  1:880237/1‑100 (MQ=255)

                                                                                      atCACCAACATTCTTTTTAACAAAATGAATAAAAACGGATGACATAAACATGCAATCAGACGTGAAAAGCACAGAAAAATCAATGATACGGaaagaaaac         <  2:3749303/99‑8 (MQ=255)

                                                                                         aCCCACATTGTTTTTAACCCATTGCATAAAAATGGTTGACATGAACTTGCCATAAGCCGTGGGAGGCACAGAAAAATCAATGATACGGAATGTGTTCTCa      <  2:1045760/100‑1 (MQ=255)

                                                                                         aCCCACATTGTTTTTAACCCATTGCATAAAAATGGTTGACATGAACTTGCCATAAGCCGTGGGAGGCACAGAAAAATCAATGATACGGAATGTGTTCTCa      <  2:1045542/100‑1 (MQ=255)

                                                                                         aCCCACATTGTTTTTAACCCATTGCATAAAAATGGTTGACATAAACTTGCCATAAGCCGTGGGAGGCACAGAAAAATCAATGATACGGAATGTGTTCTCa      <  1:1957417/100‑1 (MQ=255)

                                                                                          cccACATTGTTTTTAACCCATTGCATAAAAATGGTTGACATAAACTTGCCATAAGCCGTGGGAGGCACAGAAAAATCAATGATACGGAATGTGTTCTCAc     >  1:783226/1‑100 (MQ=255)

                                                                                          cccACATTGTTTTTAACCCATTGCATAAAAATGGTTGACATAAACTTGCCATAAGCCGTGGGACGCACAGAAAAATCAATGATACGGAATGTGTTCTCAc     <  1:2943823/100‑1 (MQ=255)

                                                                                           ccACATTGTTTTTAACCCATTGCATAAAAATGGTTGACATAAACTTGCCATAAGCCGTGGGAGGCACAGAAAAATCAATGATACGGAATGTGTTCTCACt    <  2:12877/100‑1 (MQ=255)

                                                                                            cacaTTGTTTTTAACCCATTGCATACAAATGGTTGACATGAACTTGCCATAAGCCGTGGGAGGCACAGAAAAATCAATGATCCGGAATGTGTTCTCACTa   >  2:3869361/1‑100 (MQ=255)

                                                                                            cacaTTGTTTTTAACCCATTGCATAAAAATGGTTGACATGAACTTGCCATAAGCCGTGGGAGGCACAGAAAAATCAATGATACGGAATGTGTTCTCACTa   <  2:155528/100‑1 (MQ=255)

                                                                                            cacaTTGTTTTTAACCCATTGCATAAAAATGGTTGACATAAACTTGCCATAAGCCGTGGGAGGCACAGAAAAATCAATGATACGGAATGTGTTCTCACTa   <  1:1979905/100‑1 (MQ=255)

                                                                                            cacaTTGTTTTTAACCCATTGCATAAAAATGGTTGACATAAACTTGCCATAAGCCGTGGGAGGCACAGAAAAATCAATGATACGGAATGTGTTCTCACTa   >  1:473578/1‑100 (MQ=255)

TCCTTGCAGGACTCCTGGAAAATACAACTGGTATGCCCATTCCCCAAAAAACGGCTGACAAAGCTTTCAAACTGACGGATGAAAATTTCACCCACATCGTTTTTAACCCATTGCATAAAAATGGTTGACATAAACTTGCCATAAGCCGTGGGAGGCACAGAAAAATCAATGATACGGAATGTGTTCTCACTAT  >  NC_000913/1579997‑1580189

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 12 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 37 ≤` `ATCG/ATCG` `< 41 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A