Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A12 F133 I0 R1 200 171.4 8351354 94.3% 7875326 99.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 3,971,690 A→C 100% Q144P (CAG→CCG)  wecC → UDP‑N‑acetyl‑D‑mannosaminuronic acid dehydrogenase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,971,6900AC100.0% 659.8 / ‑6.7 188Q144P (CAG→CCG) wecCUDP‑N‑acetyl‑D‑mannosaminuronic acid dehydrogenase
Reads supporting (aligned to +/- strand):  ref base A (1/0);  major base C (94/91);  minor base T (0/1);  total (96/92)

Only 100 of 194 total aligned reads displayed.

GGCGCGCTGGTGATCCTTGAATCCACCTCGCCGGTGGGGTCAACCGAGAAGATGGCAGAATGGTTAGCAGAGATGCGTCCGGATCTCACTTTCCCGCAGCAGGTGGGCGAGCAGGCGGACGTCAACATTGCTTACTGCCCGGAACGCGTGTTACCAGGACAGGTAATGGTCGAGCTGATTAAAAACGATCGCGT  >  NC_000913/3971593‑3971786
                                                                                                 |                                                                                                
ggCGCGCTGGTGATCCTTGAATCCACCTCGCCGGTGGGGTCAACCGAGAAGATGGCAGAATGGTTAGCAGAGATGCGTCCGGATCTCACTTTCCcgccgc                                                                                                >  2:3038173/1‑100 (MQ=255)
   gcggTGGTGATCCTTGAATCCACCTCGCCGGTGGGGTCAACCGAGAAGATGGCAGAATGGTTAGCAGAGATGCGTCCGGATCTCACTTTCCCGCCGCAgg                                                                                             <  2:1423355/100‑1 (MQ=255)
   gcgcTGGTGATCCTTGAATCCACCTCGCCGGTGGGGTCAACCGAGAAGATGGCAGAATGGTTAGCAGAGATGCGTCCGGATCTCACTTTCCCGCCGCAgg                                                                                             <  1:307057/100‑1 (MQ=255)
        ggtggtCCTTGAATCCACCTCGCCGGTTGGCTCCACCGAGCAGAGGGCAGAGTGGTGGGCAGAGATGCGTCCGGATCTCACTTTCACGCGCTAGGTgg                                                                                          >  2:1806756/1‑98 (MQ=255)
         gTGATCCTTGAATCCACCTCGCCGGTGGGGTCAACCGAGAAGATGGCAGAATGGTTAGCAGAGATGCGTCCGGATCTCACTTTCCCGCCGCAGGTGGGCg                                                                                       <  1:1013333/100‑1 (MQ=255)
          tGATCCTTGAATCCACCTCGCCGGTGGGGTCAACCGAGAAGATGGCAGAATGGTTAGCAGAGATGCGTCCGGATCTCACTTTCCCGCCGCAGGTGGGCGa                                                                                      >  1:2346827/1‑100 (MQ=255)
           gATCCTTGAATCCACCTCGCCGGTGGGGTCAACCGAGAAGATGGCAGAATGGTTAGCAGAGATGCGTCCGGATCTCACTTTCCCGCCGCAGGTGGGCGAg                                                                                     >  1:582464/1‑100 (MQ=255)
           gATCCTTGAATCCACCTCGCCGGTGGGGTCAACCGAGAAGATGGCAGAATGGTTAGCAGAGATGCGTCCGGATCTCACTTTCCCGCCGCAGGTGGGCGAg                                                                                     <  1:659645/100‑1 (MQ=255)
           gATCCTTGAATCCACCTCGCCGGTGGGGTCAACCGAGAAGATGGCAGAATGGTTAGCAGAGATGCGTCCGGATCTCACTTTCCCGCCGCAGGTGGGCGAg                                                                                     <  2:4035361/100‑1 (MQ=255)
            aTCCTTGAATCCACCTCGCCGGTGGGGTCAACCGAGAAGATGGCAGAATGGTTAGCAGAGATGCGTCCGGATCTCACTTTCCCGCCGCAGGTGGGCGAGc                                                                                    <  2:2241349/100‑1 (MQ=255)
             tCCTTGAATCCACCTCGCCGGTGGGGTCAACCGAGAAGATGGCAGAATGGTTAGCAGAGATGCGTCCGGATCTCACTTTCCCGCCGCAGGTGGGCGAGCa                                                                                   <  1:3622158/100‑1 (MQ=255)
             tCCTTGAATCCACCTCGCCGGTGGGCTCAACCGAGAAGATGGCAGAATGGTTAGCAGAGATGCGTCCGGATCTCACTTTCCCGCCGCAGGTGGGCGAGCa                                                                                   <  1:3621926/100‑1 (MQ=255)
              ccTTGAATCCACCTCGCCGGTGGGGTCAACCGAGAAGATGGCAGAATGGTTAGCAGAGATGCGTCCGGATCTCACTTTCCCGCCGCAGGTGGGCGAGCAg                                                                                  >  1:3065560/1‑100 (MQ=255)
              ccTTGAATCCACCTCGCCGGTGGGGTCAACCGAGAAGATGGCAGAATGGTTAGCAGAGATGCGTCCGGATCTCACTTTCCCGCCGCAGGTGGGCGAGCAg                                                                                  >  1:2675814/1‑100 (MQ=255)
               cTTGAATCCACCTCGCCGGTGGGGTCAACCGAGAAGATGGCAGAATGGTTAGCAGAGATGCGTCCGGATCTCACTTTCCCGCCGCAGGTGGGCGAGCAgg                                                                                 >  1:83524/1‑100 (MQ=255)
                ttGAATCCACCTCGCCGGTGGGGTCAACCGAGAAGATGGCAGAATGGTTAGCAGAGATGCGTCCGGATCTCACTTTCCCGCCGCAGGTGGGCGAGCAGGc                                                                                <  1:443574/100‑1 (MQ=255)
                 tGAATCCACCTCGCCGGTGGGGTCAACCGAGAAGATGGCAGAATGGTTAGCAGAGATGCGTCCGGATCTCACTTTCCCGCTGCAGGTGGGCGAGCAGGCg                                                                               <  2:797058/100‑1 (MQ=255)
                  gaaggcgccTCGCGGGTGGGGTCAACCGAGAAGATGGCAGAATGGTTAGCAGAGATGCGGCCGGATCTCACTGTCCCGCCGCAGGTGGGCGAGCAGGCgg                                                                              <  2:3850699/93‑1 (MQ=255)
                  gAATCCACCTCGCCGGTGGGGTCAACCGAGAAGATGGCAGCTCGGTTAGGAGAGATGCGGCCGGATCACACTTTCCCGCCGCAGGAGGGCGAGCAGGCgg                                                                              >  2:1872648/1‑100 (MQ=255)
                  gAATCCACCTCGCCGATGCGGTCAACCGAGAAGATCGCAGACCCGTTAGCAGAGACGCCGCCAGATACCACTAACCCGCCGCAGGGGcgcg                                                                                       >  2:2439274/1‑91 (MQ=255)
                      ccACCTCGCCGGTGGGGTCAACCGAGAAGATGGCAGAATGGTTGGCAGAGATGCGTCCGGATCTCACTTTCCCGCCGCAGGTGGGCGAGCAGGCGGACGt                                                                          <  2:2662728/100‑1 (MQ=255)
                       cACCTCGCCGGTGGGGTCAACCGAGAAGATGGCAGAATGGTTAGCAGAGATGCGTCCGGATCTCACTTTCCCGCCGCAGGTGGGCGAGCAGGCGGACGTc                                                                         >  2:1944146/1‑100 (MQ=255)
                       cACCTCGCCGGTGGGGTCAACCGAGAAGATGGCAGAATGGTTAGCAGAGATGCGTCCGGATCTCACTTTCCCGCCGCAGGTGGGCGAGCAGGCGGACGTc                                                                         >  1:4023841/1‑100 (MQ=255)
                       cACCTCGCCGGTGGGGTCAACCGAGAAGATGGCAGAATGGTTAGCAGAGATGCGTCCGGATCTCACTTTCCCGCCGCAGGTGGGCGAGCAGGCGGACGTc                                                                         >  1:1066983/1‑100 (MQ=255)
                             gCCGGTGGGGTCAACCGAGAAGATGGCAGAATGGTTAGCAGAGATGCGTCCGGATCTCACTTTCCCGCCGCAGGTGGGCGAGCAGGCGGACGTCAACAtt                                                                   <  1:128906/100‑1 (MQ=255)
                              ccGGTGGGGTCAACCGAGAAGATGGCAGAATGGTTAGCAGAGATGCGTCCGGATCTCACTTTCCCGCCGCAGGTGGGCGAGCAGGCGGACGTCAACATTg                                                                  <  1:4044644/100‑1 (MQ=255)
                                 gTGGGGTCAACCGAGAAGATGGCAGAATGGTTAGCAGAGATGCGTCCGGATCTCACTTTCCCGCCGCAGGTGGGCGAGCAGGCGGACGTCAACATTGCtt                                                               <  2:1969763/100‑1 (MQ=255)
                                 gTGGGGTCAACCGAGAAGATGGCAGAATGGTTAGCAGAGATGCGTCCGGATCTCACTTTCCCGCCGCAGGTGGGCGAGCAGGCGGACGTCAACATTGCtt                                                               <  2:3843838/100‑1 (MQ=255)
                                   ggggTCAACCGACAAGATGGCAGAATGGTTAGCAGAGATGCGTCCGGATCTCACTTTCCCGCCGCAGGTGGGCGAGCAGGCGGACGTCAACATTGCTTAc                                                             >  1:2734322/1‑100 (MQ=255)
                                     ggTCAACCGAGAAGATGGCAGAATGGTTAGCAGAGATGCGTCCGGATCTCACTTTCCCGCCGCAGGTGGGCGAGCAGGCGGACGTCAACATTGCTTACTg                                                           >  2:262923/1‑100 (MQ=255)
                                     ggTCAACCGAGAAGATGGCAGAATGGTTAGCAGAGATGCGTCCGGATCTCACTTTCCCGCCGCAGGTGGGCGAGCAGGCGGACGTCAACATTGCTTACTg                                                           >  1:2464455/1‑100 (MQ=255)
                                      gTCAACCGAGAAGATGGCAGAATGGTTATCAGATATCCGTCCGAGGTGGGCGGTCAGGCCGCAGGTGGGCGAGCAGGCGGCCGTCAACATAGCTTACt                                                            >  2:2592101/1‑98 (MQ=255)
                                      gTCAACCGAGAAGATGGCAGAATGGTTAGCAGAGATGCGTCCGGATCTCACTTTCCCGCCGCAGGTGGGCGAGCAGGCGGACGTCAACATTGCTTACTGc                                                          >  1:2130982/1‑100 (MQ=255)
                                       tCAACCGAGAAGATGGCAGAATGGTTAGCAGAGATGCGTCCGGATCTCACTTTCCCGCCGCAGGTGGGCGAGCAGGCGGACGTCAACATTGCTTACTGcc                                                         <  2:3214975/100‑1 (MQ=255)
                                        cAACCGAGAAGATGGCAGAATGGTTAGCAGAGATGCGTCCGGATCTCACTTTCCCGCCGCAGGTGGGCGAGCAGGCGGACGTCAACATTGCTTACTGccc                                                        >  1:2327858/1‑100 (MQ=255)
                                        cAACCGAGAAGATGGCAGAATGGTTAGCAGAGATGCGTCCGGATCTCACGTTCCCGCCGCAGGTGGGCGAGCAGGCGGACGTCAACATTGCTTACTGc                                                          >  2:3974334/1‑98 (MQ=255)
                                          aCCGAGAAGATGGCAGAATGGTTAGCAGAGATGCGTCCGGATCTCACTTTCCCGCCGCAGGTGGGCGAGCAGGCGGACGTCAACATTGCTTACTGCCCgg                                                      <  1:3320195/100‑1 (MQ=255)
                                          aCCGAGAAGATGGCAGAATGGTTAGCAGAGATGCGTCCGCATCTCACTTCCCCGCCGCCGGCGGGCGAGCCGGCGGACGTCAACATTGCTTACTTCCCg                                                       >  2:191379/1‑99 (MQ=255)
                                             gagaAGATGGCAGAATGGTTAGCAGAGATGCGTCCGGATCTCACTTTCCCGCCGCAGGTGGGCGAGCAGGCGGACGTCAACATTGCTTACTGCCCGGAAc                                                   >  2:2032170/1‑100 (MQ=255)
                                                 agaTGGCAGAATGGTTAGCAGAGATGCGTCCGGATCTCACTTTCCCGCCGCAGGTGGGCGAGCAGGCGGACGTCAACATTGCTTACTGCCCGGAACGCgt                                               >  1:2623816/1‑100 (MQ=255)
                                                 agaTGGCAGAATGGTTAGCAGAGATGCGTCCGGATCTCACTTTCCCGCCGCAGGTGGGCGAGCAGGCGGACGTCAACATTGCTTACTGCCCGGAACGCgt                                               >  2:3258755/1‑100 (MQ=255)
                                                  gaTGGCAGAATGGTTAGCAGAGATGCGTCCGGATCTCACTTTCCCGCCGCAGGTGGGCGAGCAGGCGGACGTCAACATTGCTTACTGCCCGGAACGCgtg                                              <  2:915345/100‑1 (MQ=255)
                                                  gaTGGCAGAATGGTTAGCAGAGATGCGTCCGGATCTCACTTTCCCGCCGCAGGTGGGCGAGCAGGCGGACGTCAACATTGCTTACTGCCCGGAACGCgtg                                              <  1:3504069/100‑1 (MQ=255)
                                                  gaTGGCAGAATGGTTAGCAGAGATGCGTCCGGATCTCACTTTCCCGCCGCAGGTGGGCGAGCAGGCGGACGTCAACATTGCTTACTGCCCGGAACGCgtg                                              <  1:3247622/100‑1 (MQ=255)
                                                  gaTGGCAGAATGGTTAGCAGAGATGCGTCCGGATCTCACTTTCCCGCCGCAGGTGGGCGAGCAGGCGGACGTCAACATTGCTTACTGCCCGGAACGCgtg                                              <  1:994630/100‑1 (MQ=255)
                                                   aTGGCAGAATGGTTAGAAGAGATGCGTCCGGATCTCACCTTCCCGCCGCAGGTGGGCGGGCAGGCGGACGACAACATTGCTTACTGCCCGGAAggcg                                                >  2:1221452/1‑97 (MQ=255)
                                                    tGGCAGAATGGTTAGCAGAGATGCGACCGGATCTCACTTTCCCGCAGCAGGTGGGCGAGCAGGCGGACGTCAACATTGCTTACTGCCCGGAACGCgtg                                              >  1:3161913/1‑98 (MQ=255)
                                                     ggCAGAATGGTTAGCAGACATGCGTCCGGATCTCACATACCCGCCGCAGGGGGGCGAGCAGGCGGACGTCCACAATGCTTACTGCCCGGCACGCGTGTTa                                           >  2:3906435/1‑100 (MQ=255)
                                                       cAGAATGGTTAGCAGAGATGCGTCCGGATCTCACTTTCCCGCCGCAGGTGGGCGAGCAGGCGGACGTCAACATTGCTTACTGCCCGGAACGCGTGTTAcc                                         >  2:831488/1‑100 (MQ=255)
                                                       cAGAATGGTTAGCAGAGATGCGTCCGGATCTCACTTTCCCGCCGCAGGTGGGCGAGCAGGCGGACGTCAACATTGCTTACTGCCCGGAACGCGTGTTAcc                                         <  1:3038030/100‑1 (MQ=255)
                                                       cAGAATGGTTAGCAGAGATGCGTCCGGATCTCACTTTCCCGCCGCAGGTGGGCGAGCAGGCGGACGTCAACATTGCTTACTGCCCGGAACGCGTGTTAcc                                         >  2:1049775/1‑100 (MQ=255)
                                                        aGAAGGGTTAGCAGAGATGCGTCCGGATCTCACTTTCCCGCCGCAGGTGGGCGAGCAGGCGGACGTCAACATTGCTTACTGCCCGGAACGCGTGTTACCa                                        <  2:3724713/100‑1 (MQ=255)
                                                         gAATGGTTAGCAGAGATGCGGCCGGATCTCACTTTCCCGCCGCAGGTGGGCGAGCAGGCGGACGTCAACATTGCTTACTGCCCGGAACGCGTGTTACCan                                       <  1:792228/100‑2 (MQ=255)
                                                          aaTGGTTAGCAGAGATGCGTCCGGATCTCACTTTCCCGCCGCAGGTGGGCGAGCAGGCGGACGTCAACATTGCTTACTGCCCGGAACGCGTGTTACCAgg                                      <  1:1902146/100‑1 (MQ=255)
                                                            tGGTTAGCAGAGATGCGTCCGGATCTCACTTTCCCGCCGCAGGTGGGCGAGCAGGCGGACGTCAACATTGCTTACTGCCCGGAACGCGTGTTACCAGGAc                                    >  2:1170043/1‑100 (MQ=255)
                                                            tGGTTAGCAGAGATGCGTCCGGATCTCACTTTCCCGCCGCAGGTGGGCGAGCAGGCGGACGTCAACATTGCTTACTGCCCGGAACGCGTGTTACCAGGAc                                    <  2:2702395/100‑1 (MQ=255)
                                                             ggTTAGCAGAGATGCGTCCGGATCTCACTTTCCCGCCGCAGGTGGGCGAGCAGGCGGACGTCAACATTGCTTACTGCCCGGAACGCGTGTTACCAGGACa                                   <  1:1010756/100‑1 (MQ=255)
                                                             ggTTAGCAGAGATGCGTCCGGATCTCACTTTCCCGCCGCAGGTGGGCGAGCAGGCGGACGTCAACATTGCTTACTGCCCGGAACGCGTGTTACCAGGACa                                   <  2:2007960/100‑1 (MQ=255)
                                                              gTTAGCAGAGATGCGTCCGGATCTCACTTTCCCGCCGCAGGTGGGCGAGCAGGCGGACGTCAACATTGCTTACTGCCCGGAACGCGTGTTACCAGGACAg                                  >  1:4135253/1‑100 (MQ=255)
                                                                 aGCAGAGATGCGTCCGGATCTCACTTTCCCGCCGCAGGTGGGCGAGCAGGCGGACGTCAACATTGCTTACTGCCCGGAACGCGTGTTACCAGGACAGGTa                               <  1:3733682/100‑1 (MQ=255)
                                                                  gCAGAGATGCGTCCGGATCTCACTTTCCCGCCGCAGGTGGGCGAGCAGGCGGACGTCAACATTGCTTACTGCCCGGAACGCGTGTTACCAGGACAGGTaa                              >  2:199050/1‑100 (MQ=255)
                                                                    agagATGCGTCCGGATCTCACTTTCCCGCCGCAGGTGGGCGAGCAGGCGGACGTCAACATTGCTTACTGCCCGGAACGCGTGTTACCAGGACAGGTAATg                            >  1:3998159/1‑100 (MQ=255)
                                                                    agagATGCGTCCGGATCTCACTTTCCCGCCGCAGGTGGGCGAGCAGGCGGACGTCAACATTGCTTACTGCCCGGAACGCGTGTTACCAGGACAGGTAATg                            >  1:1937102/1‑100 (MQ=255)
                                                                     gagaTGCGTCCGGATCTCACTTTCCCGCCGCAGGTGGGCGAGCAGGCGGACGTCAACATTGCTTACTGCCCGGAACGCGTGTTACCAGGACAGGTAATgg                           <  1:940739/100‑1 (MQ=255)
                                                                     gagaTGCGTCCGGATCTCACTTTCCCGCCGCAGGTGGGCGAGCAGGCGGACGTCAACATTGCTTACTGCCCGGAACGCGTGTTACCAGGACAGGTAATgg                           <  1:2042225/100‑1 (MQ=255)
                                                                      agaTGCGTCCGGATCTCACTTTCCCGCCGCAGGTGGGCGAGCAGGCGGACGTCAACATTGCTTACTGCCCGGAACGCGTGTTACCAGGACAGGTAATGGt                          <  2:1519085/100‑1 (MQ=255)
                                                                       gaTGCGTCCGGATCTCACTTTCCCGCCGCAGGTGGGCGAGCAGGCGGACGTCAACATTGCTTACTGCCCGGAACGCGTGTTACCAGGACAGGTAATGGTc                         <  1:1974162/100‑1 (MQ=255)
                                                                         tGCGTCCGGATCTCACTTTCCCGCCGCAGGTGGGCGAGCAGGCGGACGTCAACATTGCTTACTGCCCGGAACGCGTGTTACCAGGACAGGTAATGGTCGa                       >  2:3375297/1‑100 (MQ=255)
                                                                         tGCGTCCGGATCTCACTTTCCCGCCGCAGGTGGGCGAGCAGGCGGACGTCAACATTGCTTACTGCCCGGAACGCGTGTTACCAGGACAGGTAATGGTCGa                       >  1:71195/1‑100 (MQ=255)
                                                                          gCGTCCGGATCTCACTTTCCCGCCGCAGGTGGGCGAGCAGGCGGACGTCAACATTGCTTACTGCCCGGAACGCGTGTTACCAGGACAGGTAATGGTCGAg                      <  2:2171338/100‑1 (MQ=255)
                                                                          gCGTCCGGATCTCACTTTCCCGCCGCAGGTGGGCGAGCAGGCGGACGTCAACATTGCTTACTGCCCGGAACGCGTGTTACCAGGACAGGTAATGGTCGAg                      <  1:3766369/100‑1 (MQ=255)
                                                                           cGTCCGGATCTCACTTTCCCGCCGCAGGTGGGCGAGCAGGCGGACGTCAACATTGCTTACTGCCCGGAACGCGTGTTACCAGGACAGGTAATGGTCGAGc                     <  2:1743690/100‑1 (MQ=255)
                                                                           cGTCCGGATCTCACTTTCCCGCCGCAGGTGGGCGAGCAGGCGGACGTCAACATTGCTTACTGCCCGGAACGCGTGTTACCAGGACAGGTAATGGTCGAGc                     <  1:540475/100‑1 (MQ=255)
                                                                            gTCCGGATCTCACTTTCCCGCCGCAGGTGGGCGAGCAGGCGGACGTCAACATTGCTTACTGCCCGGAACGCGTGTTACCAGGACAGGTAATGGTCGAGCt                    >  1:1538312/1‑100 (MQ=255)
                                                                             tCCGGATCTCATTTTCCCGCCGCAGGTGGGCGAGCAGGCGGACGTCAACATTGCTTACTGCCCGGAACGCGTGTTACCAGGACAGGTAATGGTCGAGCTg                   <  2:3689577/100‑1 (MQ=255)
                                                                             tCCGGATCTCACTTTCCCGCCGCAGGTGGGCTAGCAGGCGGACGTCAACATTGCTTACTGCCCGGAACGCGTGTTACCAGGACAGGTAATGGTCGAg                      <  1:2046281/97‑1 (MQ=255)
                                                                             tCCGGATCTCACTTTCCCGCCGCAGGTGGGCGAGCAGGCGGACGTCAACATTGCTTACTGCTCGGAACGCGTGTTACAAGGACAGGTAATGGTCGAGCTg                   >  1:1729266/1‑100 (MQ=255)
                                                                             tCCGGATCTCACTTTCCCGCCGCAGGTGGGCGAGCAGGCGGACGTCAACATTGCTTACTGCCCGGAACGCGTGTTACCAGGACAGGTAATGGTCGAGCTg                   >  1:294278/1‑100 (MQ=255)
                                                                              ccGGATCTCACTTTCCCGCCGCAGGTGGGCGAGCAGGCGGACGTCAACATTGCTTACTGCCCGGAACGCGTGTTACCAGGACAGGTAATGGTCGAGCTGa                  <  1:2449107/100‑1 (MQ=255)
                                                                               cGGATCTCACTTTCCCGCCGCAGGTGGGCGAGCAGGCGGACGTCAACATTGCTTACTGCCCGGAACGCGTGTTACCAGGACAGGTAATGGTCGAGCTGAt                 <  2:3028703/100‑1 (MQ=255)
                                                                               cGGATCTCACTTTCCCGCCGCAGGTGGGCGAGCAGGCGGACGTCAACATTGCTTACTGCCCGGAACGCGTGTTACCAGGACAGGTAATGGTCGAGCTGAt                 <  1:1368478/100‑1 (MQ=255)
                                                                                ggATCTCACTTTCCCGCCGCAGGTGGGCGAGCAGGCGGACGTCAACATTGCTTACTGCCCGGAACGCGTGTTACCAGGACAGGTAATGGTCGAGCTGAtt                >  1:1150012/1‑100 (MQ=255)
                                                                                 gATCTCACTTTCCCGCCGCAGGTGGGCGAGCAGGCGGACGTCAACATTGCTTACTGCCCGGAACGCGTGTTACCAGGACAGGTAATGGTCGAGCTGATTa               >  2:974830/1‑100 (MQ=255)
                                                                                  aTCTCACTTTCCCGCCGCAGGTGGGCGAGCAGGCGGACGTCAACATTGCTTACTGCCCGGAACGCGTGTTACCAGGACAGGTAATGGTCGAGCTGATTaa              >  1:946596/1‑100 (MQ=255)
                                                                                   tctcACTTTCCCGCCGCAGGTGGGCGAGCAGGCGGACGTCAACATTGCTTACTGCCCGGAACGCGTGTTACCAGGACAGGTAATGGTCGAGCTGAtagat             >  2:4093188/1‑96 (MQ=255)
                                                                                   tctcACTTTCCCGCCGCAGGTGGGCGAGCAGGCGGACGTCAACATTGCTTACTGCCCGGAACGCGTGTTACCAGGACAGGTAATGGTCGAGCTGATTaaa             >  1:2988830/1‑100 (MQ=255)
                                                                                    ctcACTTTCCCGCCGCAGGTGGGCGAGCAGGCGGACGTCAACATTGCTTACTGCCCGGAACGCGTGTTACCAGGACAGGTAATGGTCGAGCTGATTaaaa            <  1:919751/100‑1 (MQ=255)
                                                                                    ctcACTTTCCCGCCGCAGGTGGGCGAGCAGGCGGACGTCAACATTGCTTACTGCCCGGAACGCGTGTTACCAGGACAGGTAATGGTCGAGCTGATTaaaa            >  2:1660395/1‑100 (MQ=255)
                                                                                    ctcACTTTCCCGCCGCAGGTGGGCGAGCAGGCGGACGTCAACATTGCTTACTGCCCGGAACGCGTGTTACCAGGACAGGTAATGGTCGAGCTGATTaaaa            >  1:1591869/1‑100 (MQ=255)
                                                                                    ctcACTTTCCCGCCGCAGGTGGGCGAGCAGGCGGACGTCAACATTGCTTACTGCCCGGAACGCGTGTTACCAGGACAGGTAATGGTCGAGCTGATTaaaa            <  2:1887667/100‑1 (MQ=255)
                                                                                    ctcACTTTCCCGCCGCAGGTGGGCGAGCAGGCGGACGTCAACATTGCTTACTGCCCGGAACGCGTGTTACCAGGACAGGTAATGGTCGAGCTGATTaaaa            >  2:2890581/1‑100 (MQ=255)
                                                                                     tgaCTTTCCCGCCACAGGTGGGCGAGCAGGCGGACGTCAACATTGCTTACTGCCCGGAACGCGTGTTACCAGGACAGGTAATGGTCGAGCTGATTaaaaa           >  1:2832017/3‑100 (MQ=255)
                                                                                     tcACTTTCCCGCCGCAGGTGGGCGAGCAGGCGGACGTCAACATTGCTTACTGCCCGGAACGCGTGTTACCAGGACAGGTAATGGTCGAAATAATTaaaaa           <  2:566395/100‑1 (MQ=255)
                                                                                      cACTTTCCCGCCGCAGGTGGGCGAGCAGGCGGACGTCAACATTGCTTACTGCCCGGAACGCGTGTTACCAGGACAGGTAATGGTCGAGCTGATTAAAAAc          >  2:2387415/1‑100 (MQ=255)
                                                                                      cACTTTCCCGCCGCAGGTGGGCGAGCAGGCGGACGTCAACATTGCTTACTGCCCGGAACGCGTGTTACCAGGACAGGTAATGGTCGAGCTGATTAAAAAc          >  2:1589168/1‑100 (MQ=255)
                                                                                        cTTTCCCGCCGCAGGTGGGCGAGCAGGCGGACGTCAACATTGCTTACTGCCCGGAACGCGTGTTACCAGGACAGGTAATGGTCGAGCTGATTAAAAACGa        >  2:1720945/1‑100 (MQ=255)
                                                                                         tttCCCGCCGCAGGTGGGCGAGCAGGCGGACGTCAACATTGCTTACTGCCCGGAACGCGTGTTACCAGGACAGGTAATGGTCGAGCTGATTAAAAACGAt       >  1:1331753/1‑100 (MQ=255)
                                                                                           tCCCGCCGCAGGTGGGCGAGCATGCGGACGTCAACATTGCTTACTGCCCGGAACGCGTGTTACCAGGACAGGTATTGGTCGAGCTGATTAAAAACGaac      >  2:684323/1‑97 (MQ=255)
                                                                                            cccGCCGCAGGTGGGCGAGCAGGCGGACGTCAACATTGCTTACTGCCCGGAACGCGTGTTACCAGGACAGGTAATGGTCGAGCTGATTAAAAACGATcgc    >  2:2254034/1‑100 (MQ=255)
                                                                                            cccGCCGCAGGTGGGCGAGCAGGCGGACGTCAACATTGCTTACTGCCCGGAACGCGTGTTACCAGGACAGGCAATGGTCGAGCTGATTAAAAACGATcgc    >  1:890182/1‑100 (MQ=255)
                                                                                                 |                                                                                                
GGCGCGCTGGTGATCCTTGAATCCACCTCGCCGGTGGGGTCAACCGAGAAGATGGCAGAATGGTTAGCAGAGATGCGTCCGGATCTCACTTTCCCGCAGCAGGTGGGCGAGCAGGCGGACGTCAACATTGCTTACTGCCCGGAACGCGTGTTACCAGGACAGGTAATGGTCGAGCTGATTAAAAACGATCGCGT  >  NC_000913/3971593‑3971786

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A