Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A11 F256 I1 R1 186 136.5 6958264 92.1% 6408561 99.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 3,971,690 A→C Q144P (CAG→CCG)  wecC → UDP‑N‑acetyl‑D‑mannosaminuronic acid dehydrogenase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009133,971,6900AC99.1% 375.6 / NA 113Q144P (CAG→CCG) wecCUDP‑N‑acetyl‑D‑mannosaminuronic acid dehydrogenase
Reads supporting (aligned to +/- strand):  ref base A (0/0);  major base C (64/48);  minor base G (1/0);  total (65/48)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01

Only 100 of 115 total aligned reads displayed.

GCGCGCTGGTGATCCTTGAATCCACCTCGCCGGTGGGGTCAACCGAGAAGATGGCAGAATGGTTAGCAGAGATGCGTCCGGATCTCACTTTCCCGCAGCAGGTGGGCGAGCAGGCGGACGTCAACATTGCTTACTGCCCGGAACGCGTGTTACCAGGACAGGTAATGGTCGAGCTGATTAAAAACGATCGCG  >  NC_000913/3971594‑3971785
                                                                                                |                                                                                               
    gcTGGTGATCCTTGAATCCACCTCGCCGGTGGGGTCAACCGAGAAGATGGCAGAATGGTTAGCAGAGATGCGTCCGGATCTCACTTTCCCGCCGCAGGTg                                                                                          <  1:1654533/100‑1 (MQ=255)
       ngTGATCCTTGAATCCACCTCGCCGGTGGGGTCAACCGAGAAGATGGCAGAATGGTTAGCAGAGATGCGTCCGGATCTCACTTTCCCGCCGCAGGTGGGc                                                                                       >  2:1866638/2‑100 (MQ=255)
       ggTGATCCTTCAATCCACCTCGCCGGTGGGGTCAACCGAGAAGATGGCAGCATGGGTAGCAGAGATGCGCCCGGCTCTCACTTACCCGCCGCAGATgcac                                                                                       >  1:3398255/1‑97 (MQ=255)
        gTGATCCTTGAATCCACCTCGCCGGTGGGGTCAACCGAGAAGATGGCAGAATGGTTAGCAGAGATGCGTCCGGATCTCACTTTCCCGCCGCAGGTGGGCg                                                                                      <  2:3167900/100‑1 (MQ=255)
         tGATCCTTGAATCCACCTCGCCGGTGGGGTCAACCGAGAAGATGGCAGAATGGTTAGCAGAGATGCGTCCGGATCTCACTTTCCCGCCGCAGGTGGGCGa                                                                                     >  1:3259824/1‑100 (MQ=255)
          gATCCTTGAATCCACCTCGCCGGTGGGGTCAACCGAGAAGATGGCAGAATGGTTAGCAGAGATGCGTCCGGATCTCACTTTCCCGCCGCAGGTGGGCGAg                                                                                    <  2:1669558/100‑1 (MQ=255)
           aTCCTTGAATCCACCTCGCCGGTGGGGTCAACCGAGAAGATGGCAGAATGGTTAGCAGAGATGCGTCCGGATCTCACTTTCCCGCCGCAGGTGGGCGAGc                                                                                   >  1:2823855/1‑100 (MQ=255)
           aTCCTTGAATCCACCTCGCCGGTGGGGTCAACCGAGAAGATGGCAGAATGGTTAGCAGAGATGCGTCCGGATCTCACTTTCCCGCCGCAGGTGGGCGAGc                                                                                   >  1:1542207/1‑100 (MQ=255)
            tCCTTGAATCCACCTCGCCGGTGGGGTCAACCGAGAAGATGGCAGAATGGTTAGCAGAGATGCGTCCGGATCTCACTTTCCCGCCGCAGGTGGGCGAGCa                                                                                  >  2:494925/1‑100 (MQ=255)
              cTTGAAGCCACCTGGCCGGTGGGGTCAACCGAGGAGATGGCAGAATGGTTGGCAGGGATGCGTCCGGATCTCACTTTCACGCCGCAGGTGGGCGAGCAgg                                                                                <  1:2744782/100‑1 (MQ=255)
                 gAATCCACCTCGCCGGTGGGGTCAACCGAGAAGATGGCAGAATGGTTAGCAGAGATGCGTCCGGATCTCACTTTCCCGCCGCAGGTGGGCGAGCAGGCgg                                                                             <  2:1990807/100‑1 (MQ=255)
                  aaTCCACCTCGCCGGTGGGGTCAACCGAGAAGATGGCAGAATGGTTAGCAGAGATGCGTCCGGATCTCACTTTCCCGCCGCAGGTGGGCGAGCAGGCGGa                                                                            <  2:3313557/100‑1 (MQ=255)
                  aaTCCACCTCGCCGGTGGGGTCAACCGAGAAGATGGCAGAATGGTTAGCAGAGATGCGTCCGGATCTCACTTTCCCGCCGCAGGTGGGCGAGCAGGCGGa                                                                            <  1:904506/100‑1 (MQ=255)
                    tCCACCTCGCCGGTGGGGTCAACCGAGAAGATGGCAGAATGGTTAGCAGAGATGCGTCCGGATCTCACTTTCCCGCCGCAGGTGGGCGAGCAGGCGGACg                                                                          <  1:172608/100‑1 (MQ=255)
                      cACCTCGCCGGTGGGGTCAACCGAGAAGATGGCAGAATGGTTCGCAGGGATGCGTCCGGGTCTGACTTTCCCGCCGCAGGCGGGCGAGCAGGCGGAc                                                                           >  1:3095980/1‑97 (MQ=255)
                      cACCTCGCCGGTGGGGTCAACCGAGAAGATGGCAGAATGGTTAGCAGAGATGCGTCCGGATCTCACTTTCCCGCCGCAGGTGGGCGAGCAGGCGGACGTc                                                                        >  1:1753890/1‑100 (MQ=255)
                      cACCTCGCCGGTGGGGTCAACCGAGAAGATGGCAGAACGGCTAGCAGAGATGCGTCCGGATCTCACTTTCCCGCCGCAGGTGGGCGAGCAgg                                                                                >  1:742239/1‑92 (MQ=255)
                        ccTCGCCGGTGGGGTCAACCGAGAAGATGGCAGAATGGTTAGCAGAGATGCGTCCGGATCTCACTTTCCCGCCGCAGGTGGGCGAGCAGGCGGACGTCaa                                                                      <  2:2312033/100‑1 (MQ=255)
                         cttccgatctgggTCAACCGAGAAGATGGCAGAATGGTTAGCAGAGATGCGTCCGGATCTCACTTTCCCGCCGCAGGTGGGCGAGCAGGCGGACGTCAAc                                                                     <  2:3324211/90‑1 (MQ=255)
                         cTCGCCGGTGGGGTCAACCGAGAAGATGGCAGAATGGTTAGCAGAGATGCGTCCGGATCTCACTTTCCCGCCGCAGGTGGGCGAGCAGGCGGACGTCAAc                                                                     >  2:430029/1‑100 (MQ=255)
                         cTCGCCGGTGGGGTCAACCGAGAAGATGGCAGAATGGTTAGCAGAGATGCGTCCGGATCTCACTTTCCCGCCGCAGGTGGGCGAGCAGGCGGACGTCAAc                                                                     <  2:201237/100‑1 (MQ=255)
                          tCGCCGGTGGGGTCAACCGAGAAGATGTCAGAATGGTTAGCAGAGATGCGTCCGGATCTCACTTTCCCGCCGCAGGTGGGCGAGCAGGCGGACGTCAAc                                                                     <  1:1574718/99‑1 (MQ=255)
                          tCGCCGGTGGGGTCAACCGAGAAGATGGCAGAATGGTTAGCAGAGATGCGTCCGGATCTCACTTTCCCGCCGCAGGTGGGCGAGCAGGCGGACGTCAACa                                                                    <  1:2395954/100‑1 (MQ=255)
                           cGCCGGTGGGGTCAACCGAGAAGATGGCAGAATGGTTAGCCGCGATGCGTCCGGATCTCACTTTCCCGCCGCAGGTGGGCGAGCAGGCGGCCGTCAAc                                                                     >  1:989249/1‑98 (MQ=255)
                             ccGGTGGGGTCAACCGAGAAGATGGCAGAATGGTTAGCAGAGATGCGTCCGGATCTCACTTTCCCGCCGCAGGTGGGCGAGCAGGCGGACGTCAACATTg                                                                 <  2:3311025/100‑1 (MQ=255)
                              cGGTGGGGTCTACCGAGAAGATGGCAGAATGGTTAGCAGAGATGCGTCCGGATCTCACTTTCCCGCCGCAGGTGGGCGAGCAGGCGGACGTCAACATTGc                                                                <  1:2290008/100‑1 (MQ=255)
                              cGGTGGGGTCAACCGAGAAGATGGCAGAATGGTTAGCAGAGATGCGTCCGGATCTCACTTTCCCGCCGCAGGTGGGCGAGCAGGCGGACGTCAACATTGc                                                                >  2:2639787/1‑100 (MQ=255)
                               ggTGGGGTCAACCGAGAAGATGGCAGAATGGTTAGCAGAGATGCGTCCGGATCTCACTTTCCCGCCGCAGGTGGGCGAGCAGGCGGACGTCAACATTGCt                                                               <  2:867575/100‑1 (MQ=255)
                               ggTGGGGTCAACCGAGAAGATGGCAGAATGGTTAGCAGAGATGCGTCCGGATCTCACTTTCCCGCCGCAGGTGGGCGAGCAGGCGGACGTCAACATTGCt                                                               <  1:2903963/100‑1 (MQ=255)
                                  ggggTCAACCGAGAAGATGGCAGAATGGTTAGCAGAGCTGCGTCGGGATCTCACTTTCCCGCCGCAGGTGGGCGAGCAGGCGGACGTCACCATTGCTTAc                                                            >  1:1176641/1‑100 (MQ=255)
                                  ggggTCAACCGAGAAGATGGCAGAATGGTTAGCAGAGATGCGTCCGGATCTCACTTTCCCGCCGCAGGTGGGCGAGCAGGCGGACGTCAACATTGCTTAc                                                            <  2:3335134/100‑1 (MQ=255)
                                  ggggTCAACCGAGAAGATGGCAGAATGGTTAGCAGAGATGCGTCCGGATCTCACTTTCCCGCCGCAGGTGGGCGAGCAGGCGGACGTCAACATTGCTTAc                                                            <  2:1338607/100‑1 (MQ=255)
                                   gggTCAACCGAGAAGATGGCAGAATGGTTAGCAGTGATGCGTCCGGATCTCACTTTTCCGCCGCAGGTGGGCGAGCAGGCGGACGTCAACATTGCTTACt                                                           >  1:333694/1‑100 (MQ=255)
                                   gggTCAACCGAGAAGATGGCAGAATGGTTAGCAGAGATGCGTCCGGATCTCACTTTCCCGCCGCAGGTGGGCGAGCAGGCGGACGTCAACagatcggaag                                                           >  1:3324160/1‑91 (MQ=255)
                                   gggTCAACCGAGAAGATGGCAGAATGGTTAGCAGAGATGCGTCCGGATCTCACTTTCCCGCCGCAGGTGGGCGAGCAGGCGGACGTCAACATTGCTTACt                                                           >  1:2428394/1‑100 (MQ=255)
                                    ggTCAACCGAGAAGATGGCAGACTGGTTAGCAGAGATGCGTCCGGATCTCACTTTACCGCCGCAGGTGGGCGAGCAGGCGGACGGCAACATTGCTTACTg                                                          >  1:776776/1‑100 (MQ=255)
                                      tCAACCGAGAAGATGGCAGAATGGTTAGCAGAGATGCGTCCGGATCTCACTTTCCCGCCGCAGGTGGGCGAGCAGGCGGACGTCAACATTGCTTACTGcc                                                        <  2:2428427/100‑1 (MQ=255)
                                       cAACCGAGAAGATGGCAGAATGGTTAGCAGAGATGCGTCCGGATCTCACTTTCCCGCCGCAGGTGGGCGAGCAGGCGGACGTCAACATTGCTTACTGccc                                                       >  2:1885424/1‑100 (MQ=255)
                                       cAACCGAGAAGATGGCAGAATGGTTAGCAGAGATGCGTCCGGATCTCACTTTCCCGCCGCAGGTGGGCGAGCAGGCGGACGTCAACATTGCTTACTGccc                                                       >  2:1937014/1‑100 (MQ=255)
                                       cAACCGAGAAGATGGCAGAATGGTTAGCAGAGATGCGTCCGGATCTCACTTTCCCGCCGCAGGTGGGCGAGCAGGCGGACGTCAACATTGCTTACTGccc                                                       >  2:2937611/1‑100 (MQ=255)
                                        aaCCGAGAAGATGGCAGAATGGTTAGCAGAGATGCGTCCGGATCTCACTTTCCCGCCGCAGGTGGGCGAGCAGGCGGACGTCAACATTGCTTACTGCCCg                                                      <  2:333698/100‑1 (MQ=255)
                                         aCCGAGAAGATGGCAGAATGGTTAGCAGAGATGCGTCCGGATCTCACTTTCCCGCCGCAGGTGGGCGAGTAGGCGGACGTCAACATTGCTTACTGCCCgg                                                     >  1:706331/1‑100 (MQ=255)
                                         aCCGAGAAGATGGCAGAATGGTTAGCAGAGATGCGTCCGGATCTCACTTTCCCGCCGCAGGTGGGCGAGCAGGCGGACGTCAACATTGCTTACTGCCCgg                                                     >  1:364330/1‑100 (MQ=255)
                                          ccGAGAAGATGGGAGAATGGTTAGCAGCGCTGCGTCCGGATCTCCCTTTCCCGCCGCAGGTGGGCGAGCAGGGGGACCTCAACATTGCTTACGGCCCg                                                      >  1:2781667/1‑98 (MQ=255)
                                           cGAGAAGATGGCAGAATGGTTAGCAGAGATGCGTCCGGATCTCACTTTCCCGCCGCAGGTGGGCGAGCAGGCGGACGTCAACATTGCTTACTGccatctt                                                   >  1:104215/1‑95 (MQ=255)
                                           cGAGAAGATGGCAGAATGGTTAGCAGAGATGCGTCCGGATCTCACTTTCCCGCCGCAGGTGGGCGAGCAGGCGGACGTCAACATTGCTTACTGCCCGGaa                                                   >  2:829537/1‑100 (MQ=255)
                                            gagaAGATGGGAGAATGGTTAGCAGAGATGAGTCCGGATCTCACTGTCCCGGGGAAGGTGGACGCGAAGGCGAACCTCACTATTGGTTCGTTCACGGAAc                                                  >  1:2959917/1‑100 (MQ=255)
                                            gagaAGATGGCAGAGTGGTTAGCAGGGAGGCGTCCGGATCTCACTTTCCCGCCGCAGGTGGGCGAGCAGGCGGACGTCAACATTGCTTACTGCCCGGAAc                                                  <  1:1007449/100‑1 (MQ=255)
                                            gagaAGATGGCAGAATGGTTAGCAGAGATGCGTCCGGATCTCACTTTCCCGCCGCAGGTGGGCGAGCAGGCGGACGTCAACATTGCTTACTGCCCGGAAc                                                  <  2:1753915/100‑1 (MQ=255)
                                             agaagaTGGCAGGATGGTTAGCAGAGATGCGTCCGGAACTCACTTTTCGGCCGCTGGTGGGCGAGCCGGCGGACGTTAACATTGCTTACTGCGCGGacag                                                 >  1:3199554/1‑97 (MQ=255)
                                               aagaTGGCAGAATGGTTAGCAGAGATGCGTCCGGATCTCACTTTCCCGCCGCAGGTGGGCGAGCAGGCGGACGTCAACATTGCTTACTGCCCGGAAcgcg                                               <  2:2886223/100‑1 (MQ=255)
                                                agaTGGCAGAATGGTTAGCAGAGATGCGTCCGGATCTCACTTTCCCGCCGCAGGTGGGCGAGCAGGCGGACGTCAACATTGCTTACTGCCCGGAACGCgt                                              >  2:2206762/1‑100 (MQ=255)
                                                agaTGGCAGAATGGTTAGCAGAGATGCGTCCGGATCTCACTTTCCCGCCGCAGGTGGGCGAGCAGGCGGACGTCAACATTGCTTACTGCCCGGAACGCgt                                              <  2:1714005/100‑1 (MQ=255)
                                                 gaTGGCAGGATGGTTAGCAGAGATGCGTCGGGATCTCACTTTCCCGCCGCAGGTGGGCGAGCAGGCGGACGTCAACATTGCTTACTGCCCGGAACGCgtg                                             <  1:755210/100‑1 (MQ=255)
                                                 gaTGGCAGAATGGTTAGCAGAGATGCGTCCGGATCTCACTTTCCCGCCGCAGGTGGGCGAGCAGGCGGACGTCAACATTGCTTACTGCCCGGAACGCgtg                                             <  2:2403784/100‑1 (MQ=255)
                                                   tGGCAGAATGGTTAGCAGAGATGCGTCCGGATCTCACTTTCCCGCCGCAGGTGGGCGAGCAGGCGGACGTCAACATTGCTTACTGCCCGGAACGCGTGtt                                           >  1:948126/1‑100 (MQ=255)
                                                     gCAGAATGGTTAGCAGAGATGCGTCCGGATCTCACTTTCCCGCCGCAGGTGGGCGAGCAGGCGGACGTCAACATTGCTTACTGCCCGGAACGCGTGTTAc                                         >  2:3195947/1‑100 (MQ=255)
                                                     gCAGAATGGTTAGCAGAGATGCGTCCGGATCTCACTTTCCCGCCGCAGGTGGGCGAGCAGGCGGACGTCAACATTGCTTACTGCCCGGAACGCGTGTTAc                                         >  2:1184184/1‑100 (MQ=255)
                                                      cAGAATGGTTAGCAGAGATGCGTCCGGATCTCACTTTCCCGCCGCAGGTGGGCGAGCAGGCGGACGTCAACATTGATTAATGCCCGGAACGCGTGTTAcc                                        >  2:2105394/1‑100 (MQ=255)
                                                       aGAATGGTTAGCAGAGATGCGTCCGGATCTCACTTTCCCGCCGCAGGTGGGCGAGCAGGCGGACGTCAACATTGCTTACTGCCCGGAACGCGTGTTACCa                                       <  1:1141817/100‑1 (MQ=255)
                                                        gAATGGTTAGCAGAGATGCGTCCGGATCTCACTTTCCCGCCGCAGGTGGGCGAGCAGGCGGACGTCAACATTGCTTACTGCCCGGAACGCGTGTTACCAg                                      <  1:2605754/100‑1 (MQ=255)
                                                        gAATGGTTAGCAGAGATGCGTCCGGATCTCACTTTCCCGCCGCAGGTGGGCGAGCAGGCGGACGTCAACATTGCTTACTGCCCGGAACGCGTGTTACCAg                                      >  1:707753/1‑100 (MQ=255)
                                                          aTGGTTAGCAGAGATGCGTCCGGATCTCCCTTTCCCGCCGCAGGTGGGCGAGCAGGCGGACGTCAACATTGCTTACTGCCCGGAACGCGTGTTACCAGGa                                    >  2:2573173/1‑100 (MQ=255)
                                                          aTGGTTAGCAGAGATGCGTCCGGATCTCACTTTCCCGCCGCAGGTGGGCGAGCAGGCGGACGTCAACATTGCTTACTGCCCGGAACGCGTGTTACCAGGa                                    >  1:167223/1‑100 (MQ=255)
                                                            ggTTAGCAGAGATGCGTCCGGATCTCACTTTCCCGCCGCAGGTGGGCGAGCAGGCGGACGTCAACATTGCTTACTGCCCGGAACGCGTGTTACCAGGACa                                  >  2:2806773/1‑100 (MQ=255)
                                                            ggTTAGCAGAGATGCGTCCGGATCTCACTTTCCCGCCGCAGGTGGGCGAGCAGGCGGACGTCAACATTGCTTACTGCCCGGAACGCGTGTTACCAGGACa                                  >  1:685737/1‑100 (MQ=255)
                                                            ggTTAGCAGAGATGCGTCCGGATCTCACTTTCCCGCCGCAGGTGGGCGAGCAGGAGGACGTCAACATTGCTTACTGCCCGGAACGCGTGTTACCAGGACa                                  >  1:3305019/1‑100 (MQ=255)
                                                               tAGCAGAGATGCGTCCGGATCTCACTTTCCCGCCGCAGGTGGGCGAGCAGGCGGACGTCAACATTGCTTACTGCCCGGAACGCGTGTTACCAGGACAGGt                               <  1:3135057/100‑1 (MQ=255)
                                                               tAGCAGAGATGCGTCCGGATCTCACTTTCCCGCCGCAGGTGGGCGAGCAGGCGGACGTCAACATTGCTTACTGCCCGGAACGCGTGTTACCAGGACAGGt                               <  2:2011386/100‑1 (MQ=255)
                                                               tAGCAGAGATGCGTCCGGATCTCACTTTCCCGCCGCAGGTGGGCGAGCAGGCGGACGTCAACATTGCTTACTGCCCGGAACGCGTGTTACCAGGACAGGt                               >  2:834846/1‑100 (MQ=255)
                                                                 gCAGAGATGCGTCCGGATCTCACTTTCCCGCCGCAGGTGGGCGAGCAGGCGGACGTCAACATTGCTTACTGCCCGGAACGCGTGTTACCAGGACAGGTaa                             >  2:2959937/1‑100 (MQ=255)
                                                                    gagaTGCGTCCGGATCTCACTTTCCCGCCGCAGGTGGGCGAGCAGGCGGACGTCAACATTGCTTACTGCCCGGAACGCGTGTTACCAGGACAGGTAATgg                          >  1:2495048/1‑100 (MQ=255)
                                                                    gagaTGCGTCCGGATCTCACTTTCCCGCCGCAGGTGGGCGAGCAGGCGGACGTCAACATTGCTTACTGCCCGGAACGCGTGTTACCAGGACAGGTAATgg                          <  1:1293812/100‑1 (MQ=255)
                                                                    gagaTGCGTCCGGATCTCACTTTCCCGCCGCAGGTGGGCGAGCAGGCGGACGTCAACATTGCTTACTGCCCGGAACGCGTGTTACCAGGACAGGTAATgg                          <  1:2681037/100‑1 (MQ=255)
                                                                       aTGCGTCCGGATCTCACTTTCCCGCCGCAGGTGGGCGAGCAGGCGGACGTCAACATTGCTTACTGCCCGGAACGCGTGTTACCAGGACAGGTAATGGTCg                       <  1:139537/100‑1 (MQ=255)
                                                                        tccttCCGGATCTCACTTTCCCGCCGCATGTGGGCGAGCAGGCGGACGTCAACATTTCTTACTGCCCTGAACGCGTGTTACCAGGACAGGTAATTGTCg                       <  1:669066/95‑1 (MQ=255)
                                                                        tGCGTCCGGATCTCACTTTCCCGCCGCAGGTGGGCGAGCAGGCGGACGTCAACATTGCTTACTGCCCGGAACGCGTGTTACCAGGACAGGTAATGGTCGa                      >  2:489963/1‑100 (MQ=255)
                                                                        tGCGTCCGGATCTCACTTTCCCGCCGCAGGTGGGCGAGCAGGCGGACGTCAACATTGCTTACTGCCCGGAACGCGTGTTACCAGGACAGGTAATGGTCGa                      >  1:2537449/1‑100 (MQ=255)
                                                                        tGCGTCCGGATCTCACTTTCCCGCCGCAGGTGGGCGAGCAGGCGGACGTCAACATTGCTTACTGCCCGGAACGCGTGTTACCAGGACAGGTAATGGTCGa                      >  2:3325586/1‑100 (MQ=255)
                                                                         gCGTCCGGATCTCACTTTCCCGCCGCAGGTGGGCGAGCAGGCGGACGTCAACATTGCTTACTGCCCGGAACGCGTGTTACCAGGACAGGTAATGGTCGAg                     <  1:2203407/100‑1 (MQ=255)
                                                                         gCGTCCGGAGCTCACTTTCCCGCCGCAGGTGGGCGAGCAGGCGGACGTCAACATTGCTTACTGCCCGGAACGCGTGTTACCAGGACAGGTAATGGTCGAg                     <  1:1309138/100‑1 (MQ=255)
                                                                           gTCCGGATCTCACTTTCCCGCCGCAGGTGGGCGAGCAGGCGGACGTCAACATTTCTTACTGCCCGGAACGCGTGTTACCAGGACAGGTAATGGTCGAGCt                   <  1:1935557/100‑1 (MQ=255)
                                                                           gTCCGGATCTCACTTTCCCGCCGCAGGTGGGCGAGCAGGCGGACGTCAACATTGCTTACTGCCCGGAACGCGTGTTACCAGGACAGGTAATGGTCGAGCt                   <  2:2872645/100‑1 (MQ=255)
                                                                           gTCCGGATCTCACTTTCCCGCCGCAGGTGGGCGAGCAGGCGGACGTCAACATTGCTTACTGCCCGGAACGCGTGTTACCAGGACAGGTAATGGTCGAGCt                   >  1:1185550/1‑100 (MQ=255)
                                                                           gTCCGGATCTCACTTTCCCGCCGCAGGTGGGCGAGCAGGCGGACGTCAACATTGCTTACTGCCCGGAACGCGTGTTACCAGGACAGGTAATGGTCGAGCt                   >  2:1839994/1‑100 (MQ=255)
                                                                              cGGATCTCACTTTCCCGCCGCAGGTGGGCGAGCAGGCGGACGTCAACATTGCTTACTGCCCGGAACGCGTGTTACCAGGACAGGTAATGGTCGAGCTGAt                <  2:2537483/100‑1 (MQ=255)
                                                                                gATCTCACTTTCCCGCCGCAGGTGGGCGAGCAGGCGGACGTCAACATTGCTTACTGCCCGGAACGCGTGTTACCAGGACAGGTAATGGTCGAGCTGATTa              >  1:2895442/1‑100 (MQ=255)
                                                                                 ntctcACTTTCCCGCCGCAGGTGGGCGAGCAGGCGTACGTCAACATTGCTTACTGCCCGGAACGCGTGTTACCAGGACAGGTAATGATCGAGCTGATTaa             >  1:3215822/2‑100 (MQ=255)
                                                                                 aTCTCACTTTCCCGCCGCAGGTGGGCGGGCAGGCGGACGTCAACATTGCTTACTGCCGGGGACGCGTGTTACGAGGACAGGTAATGGTCGAGCTGGTTaa             >  1:2609751/1‑100 (MQ=255)
                                                                                   ctcACTTTCCCGCCGCAGGTGGGCGAGCAGGCGGACGTCAACATTGCTTACTGCCCGGAACGCGTGTTACCAGGACAGGTAATGGTCGAGCTGATTaaaa           <  2:1117586/100‑1 (MQ=255)
                                                                                   ctcACTTTCCCGCCGCAGGTGGGCGAGCAGGCGGACGTCAACATTGCTTACTGCCCGGAACGCGTGTTACCAGGACAGGTAATGGTCGAGATGATTaaa            >  1:2468356/1‑99 (MQ=255)
                                                                                    tcACTTTCCCGCCGCAGGTGGGCGAGCAGGCGGACGTCAACATTGCTTACTGCCCGGAACGCGTGTTACCAGGACAGGTAATGGTCGAGCTGATTaaaaa          >  1:2548556/1‑100 (MQ=255)
                                                                                     cACTTTCCCGCCGCAGGTGGGCGAGCAGGCGGACGTCAACATTGCTTACTGCCCGGAACGCGTGTTACCAGGACAGGTAATGGTCGAGCTGATTAAAAAc         >  1:3320637/1‑100 (MQ=255)
                                                                                     cACTTTCCCGCCGCAGGTGGGCGAGCAGGCGGACGTCAACATTGCTTACTGCCCGGAACGCGTGTTACCAGGACAGGTAATGGTCGAGCTGATTAAAAAc         >  2:2042372/1‑100 (MQ=255)
                                                                                      aCTTTCCCGCCGCAGGTGGGCGAGCAGGCGGACGTCAACATTGCTTACTGCCCGGAACGCGTGTTACCAGGACAGGTAATGGTCGAGCTGATTAAAAACg        >  1:1671095/1‑100 (MQ=255)
                                                                                         ttCCCGCCGCAGGTGGGCGAGCAGGCGGACGTCAACATTGCTTACTGCCCGGAACGCGTGTTACCAGGACAGGTAATGGTCGAGCTGATTAAAAACGATc     >  2:2815109/1‑100 (MQ=255)
                                                                                          tCCCGCCGCAGGTGGGCGAGCAGGCGGACGTCAACATTGCTTACTGCCCGGAACGCGTGTTACCAGGACAGGTAATGGTCGAGCTGATTAAAAACGATcg    >  1:1557609/1‑100 (MQ=255)
                                                                                           cccGCCGCAGGTGGGCGAGCAGGCGGACGTCAACATTGCTTACTGCCCGGAACGCGTGTTACCAGGACAGGTAATGGTCGAGCTGATTAAAAACGATcgc   >  1:3400612/1‑100 (MQ=255)
                                                                                           cccGCCGCAGGTGGGCGAGCAGGCGGACGTCAACATTGCTTACTGCCCGGAACGCGTGTTACCAGGACAGGTAATGGTCGAGCTGATTAAAAACGATcgc   <  2:1617471/100‑1 (MQ=255)
                                                                                            ccgccgCAGGTGGGCGAGCAGGCGGACGTCAACATTGCTTACTGCCCGGAACGCGTGTTACCAGGACAGGTAATGGTCGAGCTGATTAAAAACGATcgcg  >  1:1794061/1‑100 (MQ=255)
                                                                                                |                                                                                               
GCGCGCTGGTGATCCTTGAATCCACCTCGCCGGTGGGGTCAACCGAGAAGATGGCAGAATGGTTAGCAGAGATGCGTCCGGATCTCACTTTCCCGCAGCAGGTGGGCGAGCAGGCGGACGTCAACATTGCTTACTGCCCGGAACGCGTGTTACCAGGACAGGTAATGGTCGAGCTGATTAAAAACGATCGCG  >  NC_000913/3971594‑3971785

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A