Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F18 I0 R1 150 105.7 2655328 79.3% 2105675 226.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 2,132,787 A→C 100% I204S (ATC→AGC)  wcaA ← putative glycosyl transferase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009132,132,7870AC98.7% 253.5 / ‑5.9 83I204S (ATC→AGC) wcaAputative glycosyl transferase
Reads supporting (aligned to +/- strand):  ref base A (1/0);  major base C (35/44);  minor base T (1/1);  total (37/46)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as polymorphism: E-value score below prediction cutoff.
Rejected as polymorphism: Frequency below/above cutoff threshold.
Rejected as polymorphism: Variant not supported by required number of reads on each strand.

ATCTTTAGCGCCCCCGAATACCATCAGCCAGACGTTTGCCGTTACGCACCGACAGCAGCGTCAGCAAAGTGCGCCAGGTCATACGTTTATTGCGGATCTGGTAGAGGGTAAAC‑AGCTGATATTTTTTGCTGGCGCGGTCGAATTTGTCTTTGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCG‑GTGACGAGGTGATCTG‑CATTTCACCGTGATTG‑ATATGCAG‑GATCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTATCGAACAAACACTCTTTGAAACGCCATGCCCAGGTAAAGACCTGGTTGCCAATGATATTGCGTTTGTAGAACAGGCGGCGTGAATACGGCGATTTGGGATACAGCGGCAAGCTTGCCGGTTGGGAATAGACT  >  NC_000913/2132554‑2133011
                                                                                                                                                                                                                                              |                                                                                                                                                                                                                                
aTCTTTAGCGCCCCCGAATACCATCAGCCAGACGTTTGCCGTTACGCACCGACAGCAGCGTCAGCAAAGTGCGCCAGGTCATACGTTTATTGCGGATCTGGTAGAGGGTAAAC‑AGCTGATATTTTTTGCTGGCGCGGTCGAATTTGTCTTTGTGCTTGCGGTAAAAGTGGAAGAACCCGGAGAATTTTTTCG‑GTGACGAGGTGATCTG‑CATTTCACCGTGATTG‑ATATGCAG‑GCTCTGc                                                                                                                                                                                                                             >  1:1098312/1‑239 (MQ=255)
 tCTTTAGCGCCCCCGAATACCATCAGCCAGACGTTTGCCGTTACGCACCGACAGCAGCGTCAGCAAAGTGCGCCAGGTCATACGTTTATTGCGGATCTGGTAGAGGGTAAAC‑AGCTGATATTTTTTGCTGGCGCGGTCGAATTTGTCTTTGTGCTTCCGGTAAAAGTGGAAGAACCCGGGGAATTTTTTCG‑GTGACGGGGGGCTTGG‑CCTTTACCCGTGATTG‑ATATGCAG‑Gctctcgg                                                                                                                                                                                                                            >  2:893939/1‑236 (MQ=255)
   tttCGCCCCCCCCAATCCCATCCGCCAGAGGTTTCGCTTTAACCACCGACAGCCGGGTAAGGAAAGGGCGCTGGGTCATTTGTTTATTGCGGATCTGGTAGAGGGTAAAC‑AGCTGATAGTTTTTGATGGCGCGGGTGAATTTGTCTTTGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCG‑GTGCCGAGGTGATCTG‑CATTTCACCGTGATTG‑ATATGCAG‑GCTCTGCGTc                                                                                                                                                                                                                          <  2:780771/239‑1 (MQ=255)
   tttAGCGCCCCCGGATCCCATCAGCCAGACGTTTGCCGTTACGCACCGACAGCAGCGTCAGCAAAGTGCGCCAGGTCATACGTTTATTGCGGATCTGGTAGAGGGTAAAC‑AGCTGATATTTTTTGCTGGCGCGGTCGAATTTGTCTTTGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCG‑GTGACGAGGTGATCTG‑CATTTCACCGTGATTG‑ATATGCAG‑GCTCTGCGTc                                                                                                                                                                                                                          <  1:1223920/239‑1 (MQ=255)
            cccGAATACCATCAGCCAGACGTTTGCCGTTACGCACCGACAGCAGCGTCAGCAAAGTGCGCCAGGTCATACGTTTATTGCGGATCTGGTAGAGGGTAAAC‑AGCTGATATTTTTTGCTGGCCCGGTCGACTTTGTCTTTGTGCTTGCGGTAAAAGTGGCAGTACCCGGAGAATTTTTTCG‑GTGACCGGGTGCTCTG‑CATTTCCCCCGGCTTG‑ATATGCAG‑GCTTTCCGTCCCCccttc                                                                                                                                                                                                                  >  2:680470/1‑238 (MQ=255)
                    ccATCAGGCAGGCGTTGGCCGTTACGCACCGACAGCAGCGTCAGCAAAGTGCGCCAGGTCATTCGTTTATTGCGGATCTGGTAGAGGGTAAAC‑AGCTGATATTTTTTGCTGGCGCGGTCGAATTTGTCTTTGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCG‑GTGACGAGGTGATCTG‑CATTTCACCGTGATTG‑ATATGCAG‑GCTCTGCGTCGCCTCTTCTACTTTCCa                                                                                                                                                                                                         <  1:498603/239‑1 (MQ=255)
                       tCAGCCAGACGTTTGCCGTTACGCACCGACAGCAGCGTCAGCAAAGTGCGCCAGGTCATACGTTTATTGCGGATCTGGTAGAGGGTAAAC‑AGCTGATATTTTTTGCTGGCGCGGTCGAATTTGTCTTTGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCG‑GTGACGAGGTGATCTG‑CATTTCACCGTGATTG‑ATATGCAG‑GCTCTGCGTCGCCTCTTCTACTTTCCCCgg                                                                                                                                                                                                      >  1:1044754/1‑239 (MQ=255)
                       tCAGCCAGACGTTTGCCGTTACGCACCGACAGCAGCGTCAGCAAAGTGCGCCAGGTCATACGTTTATTGCGGATCTGGGAGAGGGTAAAC‑AGCTGATATTTTTTGCTGGCGCGGTCGAATTTGTCTTTGTGCTTGCGGTAAAAGGGGAAGAACCCGGGGAATTTTTTCG‑GTGACGAGGGGATCTG‑ATTTTCCCAGGGATTGTTTGTGC‑G‑GTTTTGCGTCGCCTCTTTTACTTTTCCCgg                                                                                                                                                                                                      >  2:1153257/1‑239 (MQ=255)
                       tCAGCCAGACGTTTGCCGTTACGCACCGACAGCACCGTCAGCAAAGTGCGCCAGGTCATACGTTTATTGCGGATCTGGTAGAGGGGAAAC‑AGCTGATATTTTTTGCTGGCGCGGGCGAATTTGCCTTTGTGCTTGCGGAAAAAGTGGAAGTACCCGGAGAATTTTTCCG‑GTGACGAGTGGATCTG‑CATTTCACCGGGCTTG‑ATATGCAG‑GACCTGCGACGCCTCTTCTCATTTCCACgg                                                                                                                                                                                                      >  2:892258/1‑239 (MQ=255)
                         gccccgtcGTTTCCCGTTTCGCACCGACAGCAGGGTTAGGAAGTTGCGCCAGGTTATACGTTTATTGCGGATTTGGTTGAGGGTAAAC‑AGCTGATATTTTTTGCTGGCGCGGTCGAATTTGTCTTTGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCG‑GTGACGAGGTGATCTG‑CATTTCACCGTGATTG‑ATATGCAG‑GCTCTGCGTCGCCTCTTCTACTTTCCACGGtt                                                                                                                                                                                                    <  2:636184/232‑1 (MQ=255)
                          gCCAGACGTTTGCCGTTACGCACCGACAGCAGCGTCAGCAAAGTGCGCCAGGTCATACGTTTATTGCGGATCTGGTAGAGGTTAAAC‑AGCTGATATTTTTTGCTGGCGCGGTCGAATTTGTCTTTGTGCTTGCGGTAAAAGAGGAAGTACCCGGAGAATTTTTTCG‑GTGACGAGGTGATATG‑CATTTCACCGTGATTG‑ATATGCAG‑GCTCTGCCTCGCCTCTTCTACTTTCCACGGTTc                                                                                                                                                                                                   >  2:1064592/1‑239 (MQ=255)
                            cAGGCGTTTGCCGTTACGCGCCGACAGCAGCGTCAGCAAAGTGCGCCAGGTCATACGTTTATTGCGGATCTGGTAGAGGGTAAAC‑AGCTGATATTTTTTGCTGGCGCGGTCGAATTTGTCTTTGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCG‑GTGACGAGGTGATCTG‑CATTTCACCGTGATTG‑ATATGCAG‑GCTCTGCGTCGCCTCTTCTACTTTCCACGGtt                                                                                                                                                                                                    <  1:1273159/236‑1 (MQ=255)
                            cAGACTGTTGCCGTTACGCACCGACAGCAGCGTCAGCAAAGTGCGCCAGGTCATACGTTTATTGCGGATCTGGTAGAGGGTAAAC‑AGCTGATATTTTTTGCTGGCGCGGTCGAATTTGTCTTTGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCG‑GTGACGAGGTGATCTG‑CATTTCACCGTGATTG‑ATATGCAG‑GCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCg                                                                                                                                                                                                  <  1:975309/238‑1 (MQ=255)
                            cAGACGTTTGCCGTTACGCACCGACAGCAGCGTCAGCAAAGTGCGCCAGGTCATACGTTTATTGCGGATCTGGTAGAGGGTAAAC‑AGCTGATATTTTTTGCTGGCGCGGTCGAATTTGTCTTTGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCG‑GTGACGAGGTGATCTG‑CATTTCACCGTGATTG‑ATATGCAG‑GCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGc                                                                                                                                                                                                 <  1:1153257/239‑1 (MQ=255)
                              gcggTTTTCCGTTTCGCCCCGGCAGGGGGGGAAGCAAAGCGGGCCAGGTTATAGCTTTAGTGCGGATCTGGTAGAGGGTAAAC‑AGCTGATATTTTTTGCTGGCGCGGGCGAATTTGTCTTTGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCG‑GTGACGAGGTGATCTG‑CATTTCACCGTGATTG‑ATATGCAG‑GCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCg                                                                                                                                                                                               <  2:432588/236‑1 (MQ=255)
                               aCGTTTGCCGTTACGCACCGACAGCAGCGTCAGCAAAGTGCGCCAGGTCATACGTTTATTGCGGATCTGGTAGAGGGTAAAC‑AGCTGATATTTTTTGCTGGCGCGGTCGAATTTGTCTTTGTGCTTGCGGTAAAAGTGGAAGTCCCCGGAGAATTTTTTCG‑GTGACGAGGTGATCTG‑CATTTCACCGTGATTG‑ATATGCAG‑GCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGt                                                                                                                                                                                              >  1:693508/1‑239 (MQ=255)
                                cGTTTGCCGTTACGCACCGACAGCAGCGTCAGCAAAGTGCGCCAGGTCATACGTTTATTGCGGATCTGGTAGAGGGTAAAC‑AGCTGATATTTTTTGCTGGCGCGGTCGAATTTGTCTTTGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCG‑GTGACGAGGTGATCTG‑CATTTCACCGTGATTG‑ATATGCAG‑GCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGcc                                                                                                                                                                                                <  1:1205355/236‑1 (MQ=255)
                                   ttGCCGTTACGCACCGACAGCAGCGTCAGCAAAGTGCGCCAGGTCATACGTTTATTGCGGATCTGGTAGAGGGTAAAC‑AGCTGATATTTTTTGCTGGCGCGGTCGAATTTGTCTTTGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCG‑GTGACGAGGTGATCTG‑CATTTCACCGTGATTG‑ATATGCAG‑GCTCTGCGACGCTTCTTCTCCTTTCACCGGTTCGCCGTACt                                                                                                                                                                                           >  1:89558/1‑238 (MQ=255)
                                    tGCCGTTACGCACCGACAGCAGCGTCAGCAAAGTGCGCCAGGTCATACGTTTATTGCGGATCTGGCAGAGGGCAAAC‑AGCTGATATTTTTTGCTGGCGCGGTCGAATTTGTCTTTGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCG‑GGGACGAGGTGATCTG‑CATTTCACCGTGATTG‑ATCTGCAG‑GCTCTGCGTCGCCTCTTCTACTTTCCCCGGTTCGCCGTACTc                                                                                                                                                                                          >  1:752983/1‑238 (MQ=255)
                                                       cagcGTCAGCAAAGTGCGCCAGGTCATACGTTTATTGCGGATCTGGTAGAGGGTAAAC‑CGCTGATATTTTTTGCTGGCGCGGTCGAATTTGTCTTTGTGCTTGCGGTAAAAGTGTAAGTACCCGGAGAACTTTTTCG‑GTTACGCGGTGACCTA‑CATTTCACCTGGTTTG‑A‑GCACAGAGCCATGAGTGCCCTCTTTTACCTTCCCCGGTTGCCCGTTCTCCCCCACAATCCCGAGGAAGa                                                                                                                                                                      >  2:864076/1‑239 (MQ=255)
                                                        agggTCAGCAAAGTGGGCCAGGTCATTCGTTTAGTGGGGATGTGGTAGGTGGTAAAC‑AGCTGATATTTTTTGCTGGCGCGGTCGAATTTGTCTTTGGGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCG‑GTGACGAGGTGATCTG‑CATTTCACCGTGATTG‑ATATGCAG‑GCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGAAGa                                                                                                                                                                      <  2:323077/235‑1 (MQ=255)
                                                        aggctCAGCAAAGTGTGCCTGGTCATACGTTTATTGCGGATCTGGTAGAGGGTAAAC‑AGCTGATATTTTTTGCTGGCGCGGTCGAATTTGTCTTTGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCG‑GTGACGAGGTGATCTG‑CATTTCACCGTGATTG‑ATATGCAG‑GCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGAAGa                                                                                                                                                                      <  2:920783/234‑1 (MQ=255)
                                                           gTCAGCAAAGTGCGCCAGGTCATACGTTTATTGCGGATCTGGTAGAGGGTAAAC‑AGCTGATATTTTTTGCTGGCGCGGTCGAATTTGTCTTTGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCG‑GTGACGAGGTGATCTG‑CATTTCACCGTGATTG‑ATATGCAG‑GCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGAAGATGTc                                                                                                                                                                  >  1:897996/1‑239 (MQ=255)
                                                                   aGTGCGCCAGGTCATACGTTTATTGCGGATCTGGTAGAGGGTAAAC‑AGCTGATATTTTTTGCTGGCGCGGTCGAATTTGTCTTTGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCG‑GTGACGAGGTGATCTG‑CATTTCACCGTGATTG‑ATATGCAG‑GCTCTGGGTCGCCTCTTCTACTTTCCCCGGTTCGCCGTACTCCACCCCCAACCCCAGAAAGATGTCGTAAt                                                                                                                                                             >  2:1064937/1‑236 (MQ=255)
                                                                           cggtttttcGTTTTTTGCGGGTTTGTTAGAGGGTAACC‑AGCTGATTTTTTTTGCTGGCGCGGTCGAATTTGTTTTTGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCG‑GTGACGAGGTGATCTG‑CATTTCACCGTGATTG‑ATATGCAG‑GCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTgctgct                                                                                                                                                  <  2:1054458/231‑1 (MQ=255)
                                                                              gtattagTTTATTGGGGATTGGGTTG‑TGGTAAACGAGGTGATATTTGTTGCTGGTGCGGTAGGATTTGTCTGTGTGCGTGCGTAAAAAGTGGAAGACCCCGGAGAATTGTTTCG‑GGGACGAGGTCATCTG‑CATTTCCCCGTGATTG‑ATATGCAG‑GCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCttt                                                                                                                                                <  2:897996/232‑1 (MQ=255)
                                                                               cATACGTTTATTGCGGATCTGGTAGAGGGTAAAC‑AGCTGATATTTTTTGCTGGCGCGGTCGAATTTGTCTTTGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCG‑GTGACGAGGTGATCTG‑CATTTCACCGTGATTG‑ATATGCAG‑GCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCCCCATCCGCAGGAAAATGTCGTAATCCTGTGCCGCtttaa                                                                                                                                              >  1:380028/1‑237 (MQ=255)
                                                                                 tACGTTTATTGCGGATCTGGTAGAGGGTAAAC‑AGCTGATATTTTTTGCTGGCGCGGTCGAATTTGTCTTTGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCG‑GTGACGAGGTGATCTG‑CATTTCACCGTGATTG‑ATATGCAG‑GCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCTGCTTTCAg                                                                                                                                             >  1:1054458/1‑238 (MQ=255)
                                                                                 tACGTTTATTGCGGATCTGGTAGAGGGTAAAC‑AGCTGATATTTTTTGCTGGCGCGGTCGAATTTGTCTTTGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCG‑GTGACGAGGTGATCTG‑CATTTCACCGTGATTG‑ATATGCAG‑GCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGt                                                                                                                                            >  1:277061/1‑239 (MQ=255)
                                                                                  tcGTTTATTGCGGATCTGGTAGAGGGTAAAC‑AGCTGATATTTTTTGCTGGCGCGGTCGAATTTGTCTTTGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCG‑GTGACGAGGTGATCTG‑CATTTCACCGTGATTG‑ATATGCAG‑GCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGtt                                                                                                                                           <  1:959135/238‑1 (MQ=255)
                                                                                    gTTTATTGGGGATCTGGTAGAGGGTAAAC‑AGCTGATATTTTTTGCTGGCGCGGTCGAATTTGTCTTTGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCG‑GTGACGAGGTGATCTG‑CATTTCACCGTGATTG‑ATATGCAG‑GCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGtt                                                                                                                                           <  1:776564/237‑1 (MQ=255)
                                                                                      ttATTGCGGATCTGGTAGAGGGTAAAC‑AGCTGATATTTTTTGCTGGCGCGGTCGAATTTGTCTTTGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCG‑GTGACGAGGTGATCTG‑CATTTCACCGTGATTG‑ATATGCAG‑GCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCgtt                                                                                                                                       >  1:45735/1‑237 (MQ=255)
                                                                                        aTTGCGGATCTGGTAGAGGGTAAAC‑AGCTGATATTTTTTGCTGGCGCGGTCGAATTTGTCTTTGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCG‑GTGACGAGGTGATCTG‑CATTTCACCGTGATTG‑ATATGCAG‑GCTCTGCGTCGCCTCTTCTACTTTCCACGGTTAGCCGGACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTa                                                                                                                                      >  1:1214548/1‑238 (MQ=255)
                                                                                              gATCTGGTAGAGGGTAAAC‑AGCTGATATTTTTTGCTGGCGCGGTCGAATTTGTCTTTGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCG‑GTGACGAGGTGATCTG‑CATTTCACCGTGATTG‑ATATGCAG‑GCTCTGCGTCGCCTCTTTTACTTTCCACGGTTCGCCGTACTCAACCAACATCCGCAGGAAGATGTCGTAATCCTGGGCCGCTTTCAGTTCGGTATCGaa                                                                                                                                 >  2:776564/1‑237 (MQ=255)
                                                                                                 tgtggtgggggTAAAA‑GGCTGATATTTTTTGCGGGCGCGGTTGAATTTGTCTCTGTGATTGCGGTAAAAGTGGAAGGCCCCGGAGAATTTTTTCG‑GTGGCGATGTGATCTG‑CAGTTCACCTGGATTG‑ATATGCAG‑GCTCTGCTGCGCCTCTTCTACTTTCCACGGTTCGCCGTTCTCCACCACCAGCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTATCGaacaaac                                                                                                                            <  2:693508/231‑1 (MQ=255)
                                                                                                          ggTAAAC‑AGCTGATATTTTTTGCTGGCGCGGTCGAATTTGTCTTTGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCG‑GTGACGAGGTGATCTG‑CATTTCACCGTGATTG‑ATATGCAG‑GCTCTGCGTCGCCTCTTCTACTTTCCACGGTTGGCCGTACTCCACCACCATCCGCAGGACGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTATCGACCAAACACTCTTTgc                                                                                                                   >  1:65051/1‑238 (MQ=255)
                                                                                                          ggTAAAC‑AGCTGATATTTTTTGCTGGCGCGGTCGAATTTGTCTTTGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCG‑GTGACGAGGTGATCTG‑CATTTCACCGTGATTG‑ATATGCAG‑GCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCCCCACCCGCAGGACACTGTCGTAATCCTGTGCCCCCTTCAGTTCGGTATCGAACAAACACACTTTGa                                                                                                                   >  2:403975/1‑239 (MQ=255)
                                                                                                          ggTAAAC‑AGCTGATATTTTTTGCTGGCGCGGTCGAATTTGTCTTTGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCG‑GTGACGAGGTGATCTG‑CATTTCACCGTGATTG‑ATATGCAG‑GCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTAt                                                                                                                                     <  1:681086/221‑1 (MQ=255)
                                                                                                           gTAAAC‑AGTTTATATTTTTGGCTGGCGCGGTTGTATTTGTCTTTGTGCTGGCGGTAAAAGTGGAAGTACCCGGATAATTTTTTCG‑GTGACGAGGTGATCTG‑CATTTCACCGTGATTG‑ATATGCAG‑GCTCTGAGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTATCGAACAAACACTCTTTGa                                                                                                                   <  2:1044754/238‑1 (MQ=255)
                                                                                                           gTAAAC‑AGCTGATATTTTTTGCTGGCGCGGACGAATTTGTCTTTGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCG‑GTGTCGAGGTGATCTG‑CATTTCACCGGGATTG‑ATATGCAG‑GCTCTGCGTCGCCTCTTCTACTTTCCACGGTTAGCCGTACTCCACCACCATCCCCAGGAAGATGCCGTAATCCTGTGCCGCTTTCCGTTCGGTATCGACCAACAACTCTTTgca                                                                                                                  >  2:749234/1‑237 (MQ=255)
                                                                                                              aaC‑AGCTGATATTTTTTGCTGGCGCGGTCGAATTTGTCTTTGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCG‑GTGACGAGGTGATCTG‑CATTTCACCGTGATTG‑ATATGCAG‑GCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTATCGACCAAACACTCTTTGaacc                                                                                                                >  1:50972/1‑236 (MQ=255)
                                                                                                              aaC‑AGCTGATATTTTTTGCTGGCGCGGTCGAATTTGTCTTTGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCG‑GTGACGAGGTGATCTG‑CATTTCACCGTGATTG‑ATATGCAG‑GCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCCCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGGATCAAACAAAAAATCTTTGAAAc                                                                                                                >  2:1210901/1‑238 (MQ=255)
                                                                                                                c‑AGCCGTTATTTTTTTCGGGGGGGGTCGAATTTTGCTTTGTGCTTGCGGTAAAATTGGAAGTACCCGTGGAATTGTTTCG‑GGGACGAGGTTATCTG‑CATGTCACCGTGATTT‑GTTTGCAG‑GCTCTGCCTCGCCTCTTCGACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTATCGAACAAACACTCTTTGAAACGcc                                                                                                             <  2:752983/239‑1 (MQ=255)
                                                                                                                    cTGATATTTTTTGCTGGCGCGGTCGAATTTGTCTTTGTGCTTGCGGTAAAAGTGGAATTACCCGGAGAATTTTTTCG‑GTGACGAGGTGATCTG‑CATTTCACCGTGATTG‑ATATTCAG‑GCTCTGCGTCGCCGCTTCTACTTTCCACGGTTCCCCGAACTCCACCACCATCCCCAGGACGATTCCGTAATCCGTTCCCCCCTTCCGTTCGGTATCGAACAAACACAATTTGAAACCCCAt                                                                                                           >  2:287553/1‑238 (MQ=255)
                                                                                                                     tgttatTTTTTGCTTGCGCGGTCGAATTTGTCTTTGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCG‑GTGACGAGGTGATCTG‑CATTTCACCGTGATTG‑ATATGCAG‑GCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTATCGAACAAACACTCTTTGAAACGcc                                                                                                             <  1:892258/232‑1 (MQ=255)
                                                                                                                     tGATTTTTTTTGTGGGCGCGGTCGAATTTGTTTTTGTGGTGTGGGTAAGAGTTGAAGTCCCCGGAGAATTTGTTCG‑GTGACGAGGGGATCTG‑CATTTCACCGGGATTG‑ATATGCAG‑GCTCTGCGTCGCCGCTTCTACTTGCCACGGTTCGCCGTACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTATCGAACAAACACTCTTTGAAACGCCATGc                                                                                                         <  2:89558/239‑1 (MQ=255)
                                                                                                                     tGATATTTTTTGCTGGCGCGGTCGAATTTGTCTTTGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCG‑GTGACGAGGTGATCTG‑CATTTCACCGTGATTG‑ATATGCAG‑GCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTATCGAACAAACACTCTTTGAAACGcc                                                                                                             <  1:749234/235‑1 (MQ=255)
                                                                                                                      gATTTTTTTTTGTTGCGCGGTCGTATTTTTTTTTTGGCTTGCGGTAAAAGTGGAAGGACCCGGAGAATGTTTTCG‑GTGACGAGGTGATCTG‑CATTTCACCGTGATTG‑ATATGCAG‑GCTCTGCGTCGCCTCTTCTACTTTCCACGGATCGCCGTACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTATCGAACAAACACTCTTTGAAACGCCATGcc                                                                                                        <  2:524357/239‑1 (MQ=255)
                                                                                                                      gATATTTTTTGCTGGGGGTGTCTAATTTGTTTTTGTTCTGTGGGGAAAAGTTGAAGTACCCGGAGAATTTTTTCGTGTG‑CGGGGTGATCTG‑CATTTCCCCGGCATTG‑ATATGCAG‑GCTCTGCGTCGCCGCTCCTACTTTCCACGGTCCGTCTTACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTATCGAACAAACACTCTTTGAATCGCCATGcc                                                                                                        <  2:1098312/239‑1 (MQ=255)
                                                                                                                      gATATTTTTTGCTGGCGCGGTCGAATTTGTCTTTGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCG‑GTGACGAGGTGATCTG‑CATTTCACCGTGATTG‑ATATGCAG‑GCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTATCGAACAAACACTCTTTGAAACGCCATGcc                                                                                                        <  1:209426/239‑1 (MQ=255)
                                                                                                                      atttttttttGCGGGGGCGGTTGAATTTGTCGTTGTGCTGGCGGTAAAAGTTGAAGGACCCGGAGAATTTTTGCG‑GTGGCGAGGTGATCTG‑CATTTCACCGGGATTG‑ATATGCAG‑GCTCTTCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTATCGAACAAACACTCTTTGAAACGCCATGcc                                                                                                        <  2:189309/235‑1 (MQ=255)
                                                                                                                       atatTTTTTGCTGGCGCGGTCGAATTTGTCTTTGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCG‑GTGACGAGGTGATCTG‑CATTTCACCGTGATTG‑ATATGCAG‑GCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTATCGAACAAACACTCTTTGAAACGCCATGccc                                                                                                       >  1:399897/1‑239 (MQ=255)
                                                                                                                            ttttGCTGGCGCGGTCGAATTTGTCTTTGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCG‑GTGACGAGGTGATCTG‑CATTTCACCGTGATTG‑ATATGCAG‑GCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTATCGAACAAACACTCTTTGAAACGCCATGCCCAGGTa                                                                                                  >  1:1171863/1‑239 (MQ=255)
                                                                                                                                 cTGGCGCGGTCGAATTTGTCTTTGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCG‑GTGACGAGGTGATCTG‑CATTTCACCGTGATTG‑ATATGCAG‑GCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTATCGAACAAACACCCTTTGAAAAGCCATGCCCAGGGaaaaa                                                                                              >  2:1205899/1‑236 (MQ=255)
                                                                                                                                      gcgGTCGAATTTGTCTTTGTGCTTGCGGTAAAAGTGGAAGTTCCCGGAGAATTTTTTCG‑GTGACGAGGTGATCTG‑CATTTCACCGTGATTG‑ATATGCAG‑GCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTATCGAACAAACACTCTTTGAAACGCCATGCCCAGGTAAAGACCTgg                                                                                         <  1:902687/238‑1 (MQ=255)
                                                                                                                                      gcgGTCGAATTTGTCTTTGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCG‑GTGACGAGGTGATCTG‑CATTTCACCGTGATTG‑ATATGCAG‑GCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTATCGAACAAACACTCTTTGAAACGCCATGCCCAGGTAAAGACCTgg                                                                                         <  1:893939/238‑1 (MQ=255)
                                                                                                                                            gAATTTGTCTTTGTGCTTGCGGTAAAAGTGGAAGTCCCCGGAGAATTTTTTCG‑GTGACGAGGTGATCTG‑CATTTCACCGTGATTG‑ATATGCAG‑GCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTATCGAACAAACACTCTTTGAAACGCCATGCCCAGGTAAAGACCTGGTTGCCa                                                                                   <  1:153359/238‑1 (MQ=255)
                                                                                                                                                  ggcTTTGTGCTTGCGGTAAAAGTGGAAGGACCCGGAGAATTTTTTCG‑GTGACGAGGTGATCTG‑CATTTCACCGTGATTG‑ATATGCAG‑GCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGGGCCGCTTTCAGTTCGGTATCGAACAAACTCTCTTTGAAACGCCATGCCCAGGTAAAGACCTGGTTGCCAATGatat                                                                            <  1:347220/237‑1 (MQ=255)
                                                                                                                                                     tttGTGCTTGCGGTAAAAGTGGAATTACCCGGAGAATTTTTTCG‑GTGACGAGGTGATCTG‑CATTTCACCGTGATTG‑ATATGCAG‑GCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTATCGAACAAACACTCTTTGAAACGCCATGCCCAGGTAAAGACCTGGTTGCCAATGATATTGc                                                                         <  1:627321/239‑1 (MQ=255)
                                                                                                                                                       tggtcTTGCGGATAAATGGGAGGTACCCGGGGAATTTTTTCG‑GGGGCGGGGTGAACTG‑AATTTCACCGTGAGTG‑ATATGCAG‑GCTCTGCGTCGCCTGTTCTACTTGCCACGGTTCGCCGTACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTATCGAACAAACACTCTTTGAAACGCCATGCCCAGGTAAAGACCTGGTTGCCAATGATATTGCGt                                                                       <  2:839499/235‑1 (MQ=255)
                                                                                                                                                             tGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCG‑GTGACGAGGTGATCTG‑CATTTCACCGTGATTG‑ATGTGCAG‑GCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGAAGa                                                                                                                                                                      >  2:520292/1‑138 (MQ=255)
                                                                                                                                                             tGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCG‑GTGACGAGGTGATCTG‑CATTTCACCGTGATTG‑ATATGCAG‑GCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGAAGa                                                                                                                                                                      <  1:520292/138‑1 (MQ=255)
                                                                                                                                                             tGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCG‑GTGACGAGGGGATCTG‑CATTTCACCGTGATTG‑ATATGCAG‑TCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCAACACCATCCGCAGGAAGAGGTCGTAATCCTGTGCCGCTTTCAGTTCGGTATCCAACAAACACTCTTTGAAACGCCATGCCCAGGTAAAGACCTGGTTGCCATTAAAATTTGGTTTgagg                                                                 >  2:912934/1‑236 (MQ=255)
                                                                                                                                                                ggTAAAAGTGGAAGTACCCGGAGAATTTTTTCG‑GTGACGAGGTGATCTG‑CATTTCACCGTGATTG‑ATATGCAG‑GCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTATCGAACAAACACTCTTTGAAACGCCATGCCCAGGTAAAGACCTGGTTGCCAATGATATTGCGttt                                                                     <  1:452254/232‑1 (MQ=255)
                                                                                                                                                                          gAAGTACCCGGAGAATTTTTTCG‑GTGACGAGGTGATCTG‑CATTTCACCGTGATTG‑ATATGCAG‑GCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTATCGAACAAACACTCTTTGAAACGCCATGCCCAGGTAAAGACCTGGTTGCCAATAATATTGCATTTTTGGACAAGggggcggg                                                    >  2:605936/1‑237 (MQ=255)
                                                                                                                                                                                cccGGAGAATTTTTTCG‑GTGACGAGGTGATCTG‑CATTTCACCGTGATTG‑ATATGCAG‑GCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGCAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTATCGAACAAAACCTCTTTGAAACGCCATGCCCAGGTAAAGACCTGGTTGCCAATGATATTGCGTTTGTAGAACGGGCGGCGTGAATACg                                              >  1:663910/1‑239 (MQ=255)
                                                                                                                                                                                 ccGGAGAATTTTTGCG‑GTGACGAGGTGATCTG‑CATTTCACCGTGATTG‑ATATGCAG‑GCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTATCGAACAAACACTCTTTGAAACGCCATGCCCAGGTAAAGACCTGGTTGCCAATGATATTGCGTTTGTAGAACAGGCGGCGTGAATACgg                                             <  1:1156542/239‑1 (MQ=255)
                                                                                                                                                                                   ggggatttttttCG‑GTGACGGGGGTATTGT‑CATTTCACCGGGATTG‑ATTATCAG‑GCTCTGCGTCGCCTTTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTATCGAACAAACACTCTTTGAAACGCCATGCCCAGGTAAAGACCTGGTTGCCAATGATATTGCGTTTGTAGAACAGGCGGCGTGAATACGGCg                                           <  2:1171863/233‑1 (MQ=255)
                                                                                                                                                                                   ggAGAATTTTTTCG‑GTGACGAGGTGATCTG‑CATTTCACCGTGATTG‑ATAGGCAG‑GCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTATCGAACAAACACTCTTTGAAACGCCATGCCCAGGTAAAGACCTGGTTGCCAATGATATTGCGTTTGTAGAACAGGCGGCGTGAATACGGCg                                           <  1:849390/239‑1 (MQ=255)
                                                                                                                                                                                   gagttaTTTTTTGG‑GTGACG‑GGGGTTGTGTCATTTCCCGGTGGTTG‑ATATGCCG‑GCTCGTCGTCCCGTCTTCTACGTCCCACGGTTCGCTGTACTCCACCACCATCCGCAGGAAGATGTCGTAAACCTGTGCCGCTTTCAGTTCGGTATCGAACAAACACTCTTTGAAACGCCATGCCCAGGTAAAGACCTGGTTGCCAATGATATTGCGTTTGTAGAACAGGCGGCGTGAATACGGCg                                           <  2:45735/234‑1 (MQ=255)
                                                                                                                                                                                      gaATTTTTTGG‑GTTACGGGGTGATCTG‑CATTTAACCTTGTTGT‑AATTGCAG‑GCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTTCCCCACCACCATCCGCAGGAAGATGTAGTAATCCTGTGCCGCTTTCAGTTCGGTATCGAACAAACACTCTTTGAAACGCCATGCCCAGGTAAAGACCTGGTTGCCAATGATATTGCGTTTGTAGAACAGGCGGCGTGAATACGGCGAt                                         <  2:274330/238‑1 (MQ=255)
                                                                                                                                                                                             ttCG‑GTGACGAGGTGATCTG‑CATTTCCCCGTGATTG‑ATAGGCAG‑GCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTATCGAACAAACACTCTTTGAAACGCCATGCCCAGGTAAAGACCTGGTTGCCAATGATATTGCGTTTGTAGAACAGGCGGCGTGAATACGGCGATTTGGGATa                                 <  1:789220/239‑1 (MQ=255)
                                                                                                                                                                                             ttCG‑GTGACGAGGTGATCTG‑CATTTCACCGTGATTG‑ATATGCAG‑GCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTATCGAACAAACACTCTTTGAAACGCCATGCCCAGGTAAAGACCTGGTTGCCAATGATATTGCGTTTGTAGAACAGGCGGCGTGAATACGGCGATTTGGGATa                                 <  1:605936/239‑1 (MQ=255)
                                                                                                                                                                                                     aCGAGGTGATCTG‑CATTTCACCGTGATTG‑ATATGCAG‑GCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTATCGACCAAACACTCTTTGAAACGCCCTGCCCGGGTAAAGACCTGGTTGCCAATGAATTTGCGTTTGTAGAACAGGCGGCGTGACTACGGGGATTTGGGATACacggga                          >  2:774276/1‑234 (MQ=255)
                                                                                                                                                                                                              tCTG‑CATTTCGCCGTTATTG‑ATATGCAG‑GCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTATCGAACAAACACTCTTTGAAACGCCATGCCCAGGTAAAGACCTGGTTGCCAATGATATTGCGTTTGTAGAACAGGCGGCGTGAATACGGCGATTTGGGATACAGCGGCAAGCTTGc                  <  1:403975/238‑1 (MQ=255)
                                                                                                                                                                                                               cTG‑CATTTCACCGTGATTG‑ATATGCAG‑GCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTATCGAACAAACACTCTTTGAAACGCCATGCCCAGGTAAAGACCTGGTTGCCAATGATATTGCGTTTGTAGAACAGGCGGCGTGAATACGGCGAGTTGGGAAAAACGGGAAAGCTTGcgg                >  2:228580/1‑237 (MQ=255)
                                                                                                                                                                                                                 g‑CATTTCCCCGTGATTG‑AATTGCAG‑GCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCCCCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTATCGAACAAACACTCTTTGAAACGCCATGCCCAGGTAAAGACCTGGTTGCCAATGATATTGCGTTTGTAGAACAGGCGGCGTGAATACGGCGATTTGGGATACAGCGGCAAGCTTGCCGGt              <  1:400987/239‑1 (MQ=255)
                                                                                                                                                                                                                  tgtttttcccGTGTTTG‑ATTTGCCG‑GTTCGCCGTCGCCTGTTCACCTTTCCACGGGTCGCCGGACTCCACCGCCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTATCGAACAAACACTCTTTGAAACGCCATGCCCAGGTAAAGACCTGGTTGCCAATGATATTGCGTTTGTAGAACAGGCGGCGTGAATACGGCGATTTGGGATACAGCGGCAAGCTTGCCGGt              <  2:50972/231‑1 (MQ=255)
                                                                                                                                                                                                                        cACCGTGATTG‑ATATGCAG‑GCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTATCGAACAAACACTCTTTGAAACGCCATGCCCAGGTAAAGACCTGGTTGCCAATGATATTGCGTTTGTAGAACAGGCGGCGTGAATACGGCGATTTGGGATACAGCGGCAAGCTTGCCGGTTGGGaa        >  1:1180524/1‑239 (MQ=255)
                                                                                                                                                                                                                           cGTGATTG‑ATATGCAG‑GCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTATCGAACAACCACTCTTTGAAACGCCATGCCCAGGTAAAGACCTGGTTGCCAATGATATTGCGTTTGTAGAACAGGCGGCGTGAATACGTCGATTTGGGATACAGCGGCCAGCTTGCCGGTTGGGACTAg     >  1:396689/1‑239 (MQ=255)
                                                                                                                                                                                                                           cGTGATTG‑ATATGCAG‑GCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTATCGAACAAACACTCTTTGAAACGCCATGCCCAGGTAAAGACCTGGTTGCCAATGATATTGCGTTTGTAGAACAGGCGGCGTGAATACGGCGATTTGGGATACAGCGGCAAGCTTTCCGGTTGGGGATAg     >  1:260083/1‑239 (MQ=255)
                                                                                                                                                                                                                             tgattg‑atATGCAG‑GCTCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTATCGAACAAACACTCTTTGAAACGCCATGCCCAGGTAAAGACCTGGTTGCCAATGATATTGCGTTTGTAGAACAGGCGGCGTGAATACGGCGATTTGGGATACAGCGGCCAGCTTGCCGGTTGGGAATAg     >  1:1236176/1‑237 (MQ=255)
                                                                                                                                                                                                                              gattg‑atATGCAG‑GCTTCGCGTCGACTCTTCTACTTTCCCCGGTTCGCCGTACTCCACCACCATCCGCAGGAAGATGGCGTAATCCTGTGCCGCTTTCAGTTCGGTATCGAACAAACACTCTTTGAAACGCCATGCCCAGGTAAAGACCTGGTTGCCAATGATATTGCGTTTGTAGAACAGGCGGCGTGAATACGGCGATTTGGGATACAGCGGCAAGCTTGCCGGTTGGGAATAGACt  <  1:1181046/239‑1 (MQ=255)
                                                                                                                                                                                                                               gatgtgtatCCAG‑GGTCCGGGTCGCCTCTTCTACGTTCCACGGTGCGCCGGACTCCCCAACCACCCGCAGGAAGATGTCTGAACCCTGTGCCGCTTTCAGTCTGGTATCGCACAAACACTCTTTGAAACTGCATGCCCAGGTAAAGACCTGGTTGCCAATGATATTGCGTTTGTAGAACCGGCGTCGTGAATACGGCGTTTTTGGATACAGCGGCAAGCTTGCCGGTGGGGAATAGACt  <  2:1325805/233‑1 (MQ=255)
                                                                                                                                                                                                                                              |                                                                                                                                                                                                                                
ATCTTTAGCGCCCCCGAATACCATCAGCCAGACGTTTGCCGTTACGCACCGACAGCAGCGTCAGCAAAGTGCGCCAGGTCATACGTTTATTGCGGATCTGGTAGAGGGTAAAC‑AGCTGATATTTTTTGCTGGCGCGGTCGAATTTGTCTTTGTGCTTGCGGTAAAAGTGGAAGTACCCGGAGAATTTTTTCG‑GTGACGAGGTGATCTG‑CATTTCACCGTGATTG‑ATATGCAG‑GATCTGCGTCGCCTCTTCTACTTTCCACGGTTCGCCGTACTCCACCACCATCCGCAGGAAGATGTCGTAATCCTGTGCCGCTTTCAGTTCGGTATCGAACAAACACTCTTTGAAACGCCATGCCCAGGTAAAGACCTGGTTGCCAATGATATTGCGTTTGTAGAACAGGCGGCGTGAATACGGCGATTTGGGATACAGCGGCAAGCTTGCCGGTTGGGAATAGACT  >  NC_000913/2132554‑2133011

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A