Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A5 F1 I2 R1 772 77.0 3769570 91.6% 3452926 105.3

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,275,815 T→C E5E (GAA→GAG)  narL ← response regulator in two‑component regulatory system with NarX

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,275,8150TC100.0% 259.4 / NA 74E5E (GAA→GAG) narLresponse regulator in two‑component regulatory system with NarX
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (36/38);  total (36/38)

ACTCCGCCAGTTCAATACCCTGTTCGCCATTACTCGCTTCGCCAACCACGGTGATATCTGGTGCCATACTGATAAGCTGTTTTACGCCAGTTCGCAGCATCGGGTGATCGTCAATCAGCAGGATAGTAGCCGGTTCCTGATTACTCATGGGTATCTCCTTGGACGTCTGTGAAAGTTTTTTCGGGAATAAA‑‑‑GGTGACCACCACTTCGGTGCCACCTGATTCACGACGGCGGACGCGGCAATCGCCTCGTAAACTTTGCGCACGATCGCG  >  NC_000913/1275682‑1275950
                                                                                                                                     |                                                                                                                                          
aCTCCGCCAGTTCAATACCCTGTTCGCCATTACTCGCTTCGCCAACCACGGTGATATCTGGTGCCATACTGATAAGCTGTTTTACGCCAGTTCGCAGCATCGGGTGATCGTCAATCAGCAGGATAGTAGCCGGCTCCTg                                                                                                                                       >  2:1811412/1‑139 (MQ=255)
 cTCCGCCAGTTCAATACCCTGTTCGCCATTACTCGCTTCGCCAACCACGGTGATATCTGGTGCCATACTGATAAGCTGTTTTACGCCAGTTCGCAGCATCGGGTGATCGTCAATCAGCAGGATAGTAGCCGGCTCCTGa                                                                                                                                      >  1:864467/1‑139 (MQ=255)
  tCCGCCAGTTCAATACCCTGTTCGCCATCACTCGCTTCGCCAACCACGGTGATATCTGGTGCCATACTGATAAGCTGTTTTACGCCAGTTCGCAGCATCGGGTGATCGTCAATCAGCAGGATAGTAGCCGGCTCCTGAt                                                                                                                                     >  2:1165698/1‑139 (MQ=255)
    cGCCAGTTCAATACCCTGTTCGCCATTACTCGCTTCGCCAACCACGGTGATATCTGGTGCCATACTGATAAGCTGTTTTACGCCAGTTCGCAGCATCGGGTGATCGTCAATCAGCAGGATAGTAGCCGGCTCCTGATTa                                                                                                                                   >  2:696508/1‑139 (MQ=255)
     gCCAGTTCAATACCCTGTTCGCCATTACTCGCTTCGCCAACCACGGTGATATCTGGTGCCATACTGATAAGCTGTTTTACGCCAGTTCGCAGCATCGGGTGATCGTCAATCAGCAGGATAGTAGCCGGCTCCTGATTAc                                                                                                                                  >  1:1475047/1‑139 (MQ=255)
       cAGTTCAATACCCTGTTCGCCATTACTCGCTTCGCCAACCACGGTGATATCTGGTGCCATACTGATAAGCTGTTTTACGGCAGTTCGCAGCATCGGGTGATCGTCAATCAGCGGGATAGTAGCCGGCTCCTGATTACTc                                                                                                                                <  2:1413685/139‑1 (MQ=255)
        aGTTCAATACCCTGTTCGCCATTACTCGCTTCGCCAACCACGGTGATATCTGGTGCCATACTGATAAGCTGTTTTACGCCAGTTCGCAGCATCGGGTGATCGTCAATCAGCAGGATAGTAGCCGGCTCCTGATTACTCa                                                                                                                               <  1:1811412/139‑1 (MQ=255)
             aaTACCCTGTTCGCCATTACTCGCTTCGCCAACCACGGTGATATCTGGTGCCATACTGATAAGCTGTTTTACGCCAGTTCGCAGCATCGGGTGATCGTCAATCAGCAGGATAGTAGCCGGCTCCTGATTACTCATGGGt                                                                                                                          <  1:343291/139‑1 (MQ=255)
               tACCCTGTTCGCCATTACTCGCTTCGCCAACCACGGTGATATCTGGTGCCATACTGATAAGCTGTTTTACGCCAGTTCGCAGCATCGGGTGATCGTCAATCAGCAGGATAGTAGCCGGCTCCTGATTACTCATGGGTAt                                                                                                                        <  1:789265/139‑1 (MQ=255)
               tACCCTGTTCGCCATTACTCGCTTCGCCAACCACGGTGATATCTGGTGCCATACTGATAAGCTGTTTTACGCCAGTTCGCAGCATCGGGTGATCGTCAATCAGCAGGATAGTAGCCGGCTCCTGATTACTCATGGGTAt                                                                                                                        <  2:1475047/139‑1 (MQ=255)
                      ttCGCCATTACTCGCTTCGCCAACCACGGTGATATCTGGTGCCATACTGATAAGCTGTTTTACGCCAGTTCGCAGCATCGGGTGATCGTCAATCAGCAGGATAGTAGCCGGCTCCTGATTACTCATGGGTAt                                                                                                                        >  1:1285928/1‑132 (MQ=255)
                      ttCGCCATTACTCGCTTCGCCAACCACGGTGATATCTGGTGCCATACTGATAAGCTGTTTTACGCCAGTTCGCAGCATCGGGTGATCGTCAATCAGCAGGATAGTAGCCGGCTCCTGATTACTCATGGGTAt                                                                                                                        <  2:1285928/132‑1 (MQ=255)
                      ttCGCCATTACTCGCTTCGCCAACCACGGTGATATCTGGTGCCATACTGATAAGCTGTTTTACGCCAGTTCGCAGCATCGGGTGATCGTCAATCAGCAGGATAGTAGCCGGCTCCTGATTACTCATGGGTATCTCCTTg                                                                                                                 >  1:1556762/1‑139 (MQ=255)
                         gCCATTACTCGCTTCGCCAACCACGGTGATATCTGGTGCCATACTGATAAGCTGTTTTACGCCAGTTCGCAGCATCGGGTGATCGTCAATCAACAGGATAGTAGCCGGCTCCTGATTACTCATGGGTAt                                                                                                                        >  1:78885/1‑129 (MQ=255)
                         gCCATTACTCGCTTCGCCAACCACGGTGATATCTGGTGCCATACTGATAAGCTGTTTTACGCCAGTTCGCAGCATCGGGTGATCGTCAATCAACAGGATAGTAGCCGGCTCCTGATTACTCATGGGTAt                                                                                                                        <  2:78885/129‑1 (MQ=255)
                                cTCGCTTCGCCAACCACGGTGATATCTGGTGCCATACTGATAAGCTGTTTTACGCCAGTTCGCAGCATCGGGTGATCGTCAATCAGCAGGATAGTAGCCGGCTCCTGATTACTCATGGGTATCTCCTTGGACGTCtgtg                                                                                                       >  2:721914/1‑139 (MQ=255)
                                     ttCGCCAACCACGGTGATGTCTGGTGCCATACTGATAAGCTGTTTTACGCCAGTTCGCAGCATCGGGTGATCGTCAATCAGCAGGATAGTAGCCGGCTCCTGATTACTCATGGGTATCTCCTTGGACGTCTGTGAAAGt                                                                                                  >  1:516198/1‑139 (MQ=255)
                                     ttCGCCAACCACGGTGATATCTGGTGCCATACTGATAAGCTGTTTTACGCCAGTTCGCAGCATCGGGTGATCGTCAATCAGCAGGATAGTAGCCGGCTCCTGATTACTCATGGGTAt                                                                                                                        >  1:722224/1‑117 (MQ=255)
                                     ttCGCCAACCACGGTGATATCTGGTGCCATACTGATAAGCTGTTTTACGCCAGTTCGCAGCATCGGGTGATCGTCAATCAGCAGGATAGTAGCCGGCTCCTGATTACTCATGGGTAt                                                                                                                        <  2:722224/117‑1 (MQ=255)
                                     ttCGCCAACCACGGTGATATCTGGTGCCATACTGATAAGCTGTTTTACGCCAGTTCGCAGCATCGGGTGATCGTCAATCAGCAGGATAGTAGCCGGCTCCTGATTACTCATGGGTATCTCCTTGGACGTCTGTGAAAGt                                                                                                  >  2:846344/1‑139 (MQ=255)
                                       cGCCAACCACGGTGATATCTGGTGCCATACTGATAAGCTGTTTTACGCCAGTTCGCAGCATCGGGTGATCGTCAATCAGCAGGATAGTAGCCGGCTCCTGATTACTCATGGGTATCTCCTTGGACGTCTGTGAAAGttt                                                                                                >  1:1145932/1‑139 (MQ=255)
                                           aaCCACGGTGATATCTGGTGCCATACTGATAAGCTGTTTTACGCCAGTTCGCAGCATCGGGTGATCGTCAATCAGCAGGATAGTAGCCGGCTCCTGATTACTCATGGGTATCTCCTTGGACGTCTGTGAAAGTTTTTTc                                                                                            <  1:381105/139‑1 (MQ=255)
                                              cACGGTGATATCTGGTGCCATACTGATAAGCTGTTTTACGCCAGTTCGCAGCATCGGGTGATCGTCAATCAGCAGGATAGTAGCCGGCTCCTGATTACTCATGGGTATCTCCTTGGACGTCTGTGAAAGTTTTTTCggg                                                                                         <  2:864467/139‑1 (MQ=255)
                                                  gTGATATCTGGTGCCATACTGATAAGCTGTTTTACGCCAGTTCGCAGCATCGGGTGATCGTCAATCAGCAGGATAGTAGCCGGCTCCTGATTACTCATGGGt                                                                                                                          <  2:1050684/102‑1 (MQ=255)
                                                  gTGATATCTGGTGCCATACTGATAAGCTGTTTTACGCCAGTTCGCAGCATCGGGTGATCGTCAATCAGCAGGATAGTAGCCGGCTCCTGATTACTCATGGGt                                                                                                                          >  1:1050684/1‑102 (MQ=255)
                                                     atatCTGGTGCCATACTGATAAGCTGTTTTACGCCAGTTCGCAGCATCGGGTGATCGTCAATCAGCAGGATAGTAGCCGGCTCCTGATTACTCATGGGTATCTCCTTGGACGTCTGTGAAAGTTTTTTCGGGAATAAA‑‑‑g                                                                               <  1:1184068/139‑1 (MQ=255)
                                                      tatCTGGTGCCATACTGATAAGCTGTTTTACGCCAGTTCGCAGCATCGGGTGATCGTCAATCAGCAGGATAGTAGCCGGCTCCTGATTACTCATGGGt                                                                                                                          >  2:1359411/1‑98 (MQ=255)
                                                      tatCTGGTGCCATACTGATAAGCTGTTTTACGCCAGTTCGCAGCATCGGGTGATCGTCAATCAGCAGGATAGTAGCCGGCTCCTGATTACTCATGGGt                                                                                                                          <  1:1359411/98‑1 (MQ=255)
                                                          tGGTGCCATACTGATAAGCTGTTTTACGCCAGTTCGCAGCATCGGGTGATCGTCAATCAGCAGGATAGTAGCCGGCTCCTGATTACTCATGGGTATCTCCTTGGACGTCTGTGAAAGTTTTTTCGGGAATAAA‑‑‑GGTGac                                                                          <  2:1145932/139‑1 (MQ=255)
                                                             tGCCATACTGATAAGCTGTTTTACGCCAGTTCGCAGCATCGGGTGATCGTCAATCAGCAGGATAGTAGCCGGCTCCTGATTACTCATGGGTATCTCCTTGGACGTCTGTGAAAGTTTTTTCGGGAATaa                                                                                    >  1:635871/1‑129 (MQ=255)
                                                             tGCCATACTGATAAGCTGTTTTACGCCAGTTCGCAGCATCGGGTGATCGTCAATCAGCAGGATAGTAGCCGGCTCCTGATTACTCATGGGTATCTCCTTGGACGTCTGTGAAAGTTTTTTCGGGAATaa                                                                                    <  2:635871/129‑1 (MQ=255)
                                                             tGCCATACTGATAAGCTGTTTTACGCCAGTTCGCAGCATCGGGTGATCGTCAATCAGCAGGATAGTAGCCGGCTCCTGATTACTCATGGGTATCTCCTTGGACGTCTGTGAAAGTTTTTTCGGGAATAAA‑‑‑GGTGaccac                                                                       <  2:1556762/139‑1 (MQ=255)
                                                                  tACTGATAAGCTGTTTTACGCCAGTTCGCAGCATCGGGTGATCGTCAATCAGCAGGATAGTAGCCGGCTCCTGGTTACTCATGGGTATCTCCTTGGACGTCTGTGAAAGTTTTTTCGGGAATAAA‑‑‑GGTGACCACCACtt                                                                  >  2:96056/1‑139 (MQ=255)
                                                                      gATAAGCTGTTTTACGCCAGTTCGCAGCATCGGGTGATCGTCAATCAGCAGGATAGTAGCCGGCTCCTGATTACTCa                                                                                                                               <  2:652690/77‑1 (MQ=255)
                                                                      gATAAGCTGTTTTACGCCAGTTCGCAGCATCGGGTGATCGTCAATCAGCAGGATAGTAGCCGGCTCCTGATTACTCa                                                                                                                               >  1:652690/1‑77 (MQ=255)
                                                                       aTAAGCTGTTTTACGCCAGTTCGCAGCATCGGGTGATCGTCAATCAGCAGGATAGTAGCCGGCTCCTGATTACTCTTGGGTATCTCCTTGGACGTCTGTGAAAGTTTTTTCGGGAATAAA‑‑‑GGTGACCACCCCTTCGGTg                                                             >  1:1826433/1‑139 (MQ=255)
                                                                         aaGCTGTTTTACGCCAGTTCGCAGCATCGGGTGATCGTCAATCAGCAGGATAGTAGCCGGCTCCTGATTACTCATGGGTATCTCCTTGGACGTCTGTGAAAGTTTTTTCGGGAATAAA‑‑‑GGTGACCACCACTTCGGTGcc                                                           <  2:1595270/139‑1 (MQ=255)
                                                                            cTGTTTTACGCCAGTTCGCAGCATCGGGTGATCGTCAATCAGCAGGATAGTAGCCGGCTCCTGAt                                                                                                                                     <  1:854497/65‑1 (MQ=255)
                                                                            cTGTTTTACGCCAGTTCGCAGCATCGGGTGATCGTCAATCAGCAGGATAGTAGCCGGCTCCTGAt                                                                                                                                     >  2:854497/1‑65 (MQ=255)
                                                                                    cGCCAGTTCGCAGCATCGGGTGATCGTCAATCAGCAGGATAGTAGCCGGCTCCTGATTACTCATGGGTATCTCCTTGGACGTCTGTGAAAGTTTTTTCGTGAATAAA‑‑‑GGTGACCACCACTTCGGTGCCACCTGATTCac                                                >  2:66202/1‑139 (MQ=255)
                                                                                         gTTCGCAGCATCGGGTGATCGTCAATCAGCAGGATAGTAGCCGGCTCCTGATTACTCATGGGTATCTCCTTGGACGTCTGTGAAAGTTTTTTCGGGAATAAA‑‑‑GGTGACCACCACTTCGGTGCCACCTGATTCACGAcgg                                           >  2:1612675/1‑139 (MQ=255)
                                                                                          ttCGCAGCATCGGGTGATCGTCAATCAGCAGGATAGTAGCCGGCTCCTGATTACTCATGGGTATCTCCTTGGACGTCTGTGAAAGTTTTTTCGGGAATAAA‑‑‑GGTGACCACCACTTCGGTGCCACCTGATTCACGAcggc                                          <  1:696508/139‑1 (MQ=255)
                                                                                            cGCAGCATCGGGTGATCGTCAATCAGCAGGATAGTAGCCGGCTCCTGATTACTCATGGGTATCTCCTTGGACGTCTGTGAAAGTTTTTTc                                                                                            >  2:290445/1‑90 (MQ=255)
                                                                                            cGCAGCATCGGGTGATCGTCAATCAGCAGGATAGTAGCCGGCTCCTGATTACTCATGGGTATCTCCTTGGACGTCTGTGAAAGTTTTTTc                                                                                            <  1:290445/90‑1 (MQ=255)
                                                                                               agcaTCGGGTGATCGTCAATCAGCAGGATAGTAGCCGGCTCCTGATTACTCATGGGTATCTCCTTGGACGTCTGTGAAAGTTTTTTCGGGAATAAA‑‑‑GGTGACCACCACTTCGGTGCCACCTGATTCACGACGGCGGAcg                                     <  1:1612675/139‑1 (MQ=255)
                                                                                                    cGGGTGATCGTCAATCAGCAGGATAGTAGCCGGCTCCTGATTACTCATGGGTATCTCCTTGGACGTCTGTGAAAGTTTTTTCGGGAATAAA‑‑‑GGTGACCACCACTTCGGTGCCACCTGATTCACGACGGCGGACGCGGCa                                >  1:859132/1‑139 (MQ=255)
                                                                                                     gggTGATCGTCAATCAGCAGGATAGTAGCCGGCTCCTGATTACTCATGGGTATCTCCTTGGACGTCTGTGAAAGTTTTTTCGGGAATAAA‑‑‑GGTGACCACCACTTCGGTGCCACCTGATTCACGACGGCGGACGCGGCaa                               >  1:1037558/1‑139 (MQ=255)
                                                                                                      ggTGATCGTCAATCAGCAGGATAGTAGCCGGCTCCTGATTACTCATGGGTATCTCCTTGGACGTCTGTGAAAGTTTTTTCGGGAATAAA‑‑‑GGTGACCACCACTTCGGTGCCACCTGATTCACGACGGCGGACGCGGCAAt                              >  1:934039/1‑139 (MQ=255)
                                                                                                       gTGATCGTCAATCAGCAGGATAGTAGCCGGCTCCTGATTACTCATGGGTATCTCCTTGGACGTCTGTGAAAGTTTTTTCGGGAATAAA‑‑‑GGTGACCACCACTTCGGTGCCACCTGATTCACGACGGCGGACGCGGCAATc                             <  1:1211013/139‑1 (MQ=255)
                                                                                                       gTGATCGTCAATCAGCAGGATAGTAGCCGGCTCCTGATTACTCATGGGTATCTCCTTGGACGTCTGTGAAAGTTTTTTCGGGAATAAA‑‑‑GGTGACCACCACTTCGGTGCCACCTGATTCACGACGGCGGACGCGGCAATc                             <  2:934039/139‑1 (MQ=255)
                                                                                                         gATCGTCAATTAGCATGATAGTAGCCGGCTTCTGATTACTCATGGGTATCTCCTTGGACGTCTGTGAAAGTTTTTTCGGGAATAAA‑‑‑GGTGACCACCACTTCGGTGCCACCTGATTCACGACGGCGGACGCGGCAATCGc                           <  1:66202/139‑1 (MQ=255)
                                                                                                         gATCGTCAATCAGCAGGATAGTAGCCGGCTCCTGATTACTCATGGGTATCTCCTTGGACGTCTGTGAAAGTTTTTTCGGGAATAAA‑‑‑GGTGACCACCACTTCGGTGCCACCTGATTCACGACGGCGGACGCGGCAATCGc                           <  1:1165698/139‑1 (MQ=255)
                                                                                                             gTCAATCAGCAGGATAGTAGCCGGCTCCTGATTACTCATGGGTATCTCCTTGGACGTCTGTGAAAGTTTTTTCGGGAATAAA‑‑‑GGTGACCACCACTTCGGTGCCACCTGATTCACGACGGCGGACGCGGCAATCGCCTCg                       >  1:581688/1‑139 (MQ=255)
                                                                                                                     gcagGATAGTAGCCGGCTCCTGATTACTCATGGGTATCTCCTTGGACGTCTGTGAAAGTTTTTTCGGGAATAAA‑‑‑GGTGACCACCACTTCGGTGCCACCTGATTCACGACGGCGGACGCGGCAATCGCCTCGTAAACttt               >  1:1610759/1‑139 (MQ=255)
                                                                                                                      cagGATAGTAGCCGGCTCCTGATTACTCATGGGTATCTCCTTGGACGTCTGTGAAAGTTTTTTCGGGAATAAA‑‑‑GGTGaccac                                                                       <  1:1202114/82‑1 (MQ=255)
                                                                                                                      cagGATAGTAGCCGGCTCCTGATTACTCATGGGTATCTCCTTGGACGTCTGTGAAAGTTTTTTCGGGAATAAA‑‑‑GGTGaccac                                                                       <  1:864272/82‑1 (MQ=255)
                                                                                                                      cagGATAGTAGCCGGCTCCTGATTACTCATGGGTATCTCCTTGGACGTCTGTGAAAGTTTTTTCGGGAATAAA‑‑‑GGTGaccac                                                                       >  2:864272/1‑82 (MQ=255)
                                                                                                                      cagGATAGTAGCCGGCTCCTGATTACTCATGGGTATCTCCTTGGACGTCTGTGAAAGTTTTTTCGGGAATAAA‑‑‑GGTGaccac                                                                       >  2:1202114/1‑82 (MQ=255)
                                                                                                                      cagGATAGTAGCCGGCTCCTGATTACTCATGGGTATCTCCTTGGACGTCTGTGAAAGTTTTTTCGGGAATAAA‑‑‑GGTGACCACCACTTCGGTGCCACCTGATTCACGACGGCGGACGCGGCAATc                             <  2:492756/124‑1 (MQ=255)
                                                                                                                      cagGATAGTAGCCGGCTCCTGATTACTCATGGGTATCTCCTTGGACGTCTGTGAAAGTTTTTTCGGGAATAAA‑‑‑GGTGACCACCACTTCGGTGCCACCTGATTCACGACGGCGGACGCGGCAATc                             >  1:492756/1‑124 (MQ=255)
                                                                                                                      cagGATAGTAGCCGGCTCCTGATTACTCATGGGTATCTCCTTGGACGTCTGTGAAAGTTTTTTCGGGAATAAA‑‑‑GGTGACCACCACTTCGGTGCCACCTGATTCACGACGGCGGACGCGGCAATCGCCTCGTAAACTTTg              >  1:49019/1‑139 (MQ=255)
                                                                                                                          aTAGTAGCCGGCTCCTGATTACTCATGGGTATTTCCTTGGACGTCTGTGAAAGTTTTTTCGGGAATAAA‑‑‑GGTGACCACCACTTCGGTGCCACCTGATTCACGACGGCGGACGCGGCAATCGCCTCGTAAACTTTGCGCa          <  2:1826433/139‑1 (MQ=255)
                                                                                                                              tagCCGGCTCCTGATTACTCATGGGTATCTCCTTGGACGTCTGTGAAAGTTTTTTCGGGAATAAA‑‑‑GGTGACCACCACTTCGGTGCCACCTGATTCACGACGGCGGACGCGGCAATc                             <  2:449240/116‑1 (MQ=255)
                                                                                                                              tagCCGGCTCCTGATTACTCATGGGTATCTCCTTGGACGTCTGTGAAAGTTTTTTCGGGAATAAA‑‑‑GGTGACCACCACTTCGGTGCCACCTGATTCACGACGGCGGACGCGGCAATc                             >  1:449240/1‑116 (MQ=255)
                                                                                                                              tagCCGGCTCCTGATTACTCATGGGTATCTCCTTGGACGTCTGTGAAAGTTTTTTCGGGAATAAA‑‑‑GGTGACCACCACTTCGGTGCCACCTGATTCACGACGGCGGACGCGGCAATCGCCTCGTAAACTTTGCGCACGAt      >  1:1363846/1‑139 (MQ=255)
                                                                                                                                gCCGGCTCCTGATTACTCATGGGTATCTCCTTGGACGTCTGTGAAAGTTTTTTCGGGAATAAAGGTGGTGACCACCACTTCGGTGCCACCTGATTCACGACGGCGGACGCGGCAATCGCCTCGTAAACTTTgcg            >  1:957841/1‑134 (MQ=255)
                                                                                                                                gCCGGCTCCTGATTACTCATGGGTATCTCCTTGGACGTCTGTGAAAGTTTTTTCGGGAATAAAGGTGGTGACCACCACTTCGGTGCCACCTGATTCACGACGGCGGACGCGGCAATCGCCTCGTAAACTTTgcg            <  2:957841/134‑1 (MQ=255)
                                                                                                                                gCCGGCTCCTGATTACTCATGGGTATCTCCTTGGACGTCTGTGAAAGTTTTTTCGGGAATAAA‑‑‑GGTGACCACCACTTCGGTGCCACCTGATTCACGACGGCGGACGCGGCAATCGCCTCGTAAACTTTGCGCACGATcg    <  2:1037558/139‑1 (MQ=255)
                                                                                                                                gCCGGCTCCTGATTACTCATGGGTATCTCCTTGGACGTCTGTGAAAGTTTTTTCGGGAATAAA‑‑‑GGTGACCACCACTTCGGTGCCACCTGATTCACGACGGCGGACGCGGCAATCGCCTCGTAAACTTTGCGCACGATcg    <  2:516198/139‑1 (MQ=255)
                                                                                                                                gCCGGCTCCTGATTACTCATGGGTATCTCCTTGGACGTCTGTGAAAGTTTTTTCGGGAATAAA‑‑‑GGTGACCACCACTTCGGTGCCACCTGATTCACGACGGCGGACGCGGCAATCGCCTCGTAAACTTTGCGCACGATcg    <  2:1610759/139‑1 (MQ=255)
                                                                                                                                gCCGGCTCCTGATTACTCATGGGTATCTCCTTGGACGTCTGTGAAAGTTTTTTCGGGAATAAA‑‑‑GGTGACCACCACTTCGGTGCCACCTGATTCACGACGGCGGACGCGGCAATCGCCTCGTAAACTTTGCGCACGATcg    >  1:329688/1‑139 (MQ=255)
                                                                                                                                gCCGGCTCCTGATTACTCATGGGTATCTCCTTGGACGTCTGTGAAAGTTTTTTCGGGAATAAA‑‑‑GGTGACCACCACTTCGGTGCCACCTGATTCACGACGGCGGACGCGGCAATCGCCTCGTAAACTTTGCGCACGATcg    <  2:1363846/139‑1 (MQ=255)
                                                                                                                                 ccGGCTCCTGATTACTCATGGGTATCTCCTTGGACGTCTGTGAAAGTTTTTTCGGGAATAAA‑‑‑GGTGACCACCACTTCGGTGCCACCTGATTCACGACGGCGGACGCGGCAATCGCCTCGTAAACTTTGCGCACGATcgc   <  1:96056/139‑1 (MQ=255)
                                                                                                                                  cGGCTCCTGATTACTCATGGGTATCTCCTTGGACGTCTGTGAAAGTTTTTTCGGGAATAAA‑‑‑GGTGACCACCACTTCGGTGCAACCTGATTCACGACGGCGGACGCGGCAATCGCCTCGTAAACTTTGCGCACGATcgcg  <  1:558635/139‑1 (MQ=255)
                                                                                                                                     |                                                                                                                                          
ACTCCGCCAGTTCAATACCCTGTTCGCCATTACTCGCTTCGCCAACCACGGTGATATCTGGTGCCATACTGATAAGCTGTTTTACGCCAGTTCGCAGCATCGGGTGATCGTCAATCAGCAGGATAGTAGCCGGTTCCTGATTACTCATGGGTATCTCCTTGGACGTCTGTGAAAGTTTTTTCGGGAATAAA‑‑‑GGTGACCACCACTTCGGTGCCACCTGATTCACGACGGCGGACGCGGCAATCGCCTCGTAAACTTTGCGCACGATCGCG  >  NC_000913/1275682‑1275950

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A