Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A9 F1 I1 R1	759	71.0	3673240	91.5%	3361014	104.6

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	NC_000913	2,484,897	(C)_6→7	coding (524/3594 nt)	evgS →	hybrid sensory histidine kinase in two‑component regulatory system with EvgA

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NC_000913	2,484,891	1	.	C	98.3%	209.4 / ‑3.4	60	coding (518/3594 nt)	evgS	hybrid sensory histidine kinase in two‑component regulatory system with EvgA
Reads supporting (aligned to +/- strand): ref base . (1/0); new base C (30/29); total (31/29)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 5.81e-01

TTCGCCGCCTCTTAATAATGACATTGCTGCAACCAAACCATTGATAATTACCTTTCCGGCGCTGGTAACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTA‑‑CCCCCC‑AGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCATTAGCATCCGTCTCAGCTGGGCACAATGATTACTTTATTGGTAGTAACATCATTACCAG  >  NC_000913/2484754‑2485023

ttCGCCGCCTCTTAATAATGACATTGCTGCAACCAAACCATTGATAATTACCTTTCCGGCGCTGGTAACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTA‑‑c                                                                                                                                      <  2:194571/139‑1 (MQ=255)

         tctTAATAATGACATTGCTGCAACCAAACCATTGATAATTACCTTTCCGGCGCTGGTAACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTA‑‑cccccccaga                                                                                                                             <  1:1069094/139‑5 (MQ=255)

                     cATTGCTGCAACCACACCATTGATAATTACCTTTCCGGCGCTGGTAACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTA‑‑c                                                                                                                                      <  2:1726952/118‑1 (MQ=255)

                     cATTGCTGCAACCAAACCATTGATAATTACCTTTCCGGCGCTGGTAACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTA‑‑c                                                                                                                                      >  1:1726952/1‑118 (MQ=255)

                        tgctgcAACCAAACCATTGATAATTACCTTTCCGGCGCTGGTAACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTA‑‑cccccccagac                                                                                                                            >  1:1343976/1‑120 (MQ=255)

                        tgctgcAACCAAACCATTGATAATTACCTTTCCGGCGCTGGTAACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTA‑‑cccccccagac                                                                                                                            <  2:1343976/125‑6 (MQ=255)

                          ctgcAACCAAACCATTGATAATTACCTTTCCGGCGCTGGTAACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTAC‑CCCCCC‑AGACGAGGTAATTCatcaat                                                                                                            >  1:585212/1‑139 (MQ=255)

                             cAACCAAACCATTGATAATTACCTTTCCGGTGCTGGTAACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTAC‑CCCCCC‑AGACGAGGTAATTCatcaatc                                                                                                           >  1:447039/1‑137 (MQ=255)

                             cAACCAAACCATTGATAATTACCTTTCCGGCGCTGGTAACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAGCCAGTAAATATTGCTCGGGTAGCAAATTAC‑CCCCCC‑AGACGAGGTAATTCatcaatc                                                                                                           <  2:447039/137‑1 (MQ=255)

                                ccaaaccaTTGATAATTACCTTTCCGGCGCTGGTAACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTAC‑CCCCCC‑AGACGAGGTAATTCATCAATCATTTc                                                                                                      >  2:104367/1‑139 (MQ=255)

                                  aaaccaTTGATAATTACCTTTCCGGCGCTGGTAACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTAC‑CCCCCC‑AGACGAGGTAATTCATCAATCATTTCCa                                                                                                    <  1:1329579/139‑1 (MQ=255)

                                    accaTTGATAATTACCTTTCCGGCGCTGGTAACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTAC‑CCCCCC‑AGACGAGGTAATTCatcaatc                                                                                                           >  2:425100/1‑130 (MQ=255)

                                    accaTTGATAATTACCTTTCCGGCGCTGGTAACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTAC‑CCCCCC‑AGACGAGGTAATTCatcaatc                                                                                                           <  1:425100/130‑1 (MQ=255)

                                         tGATAATTACCTTTCCGGCGCTGGTAACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTA‑‑cccccccagac                                                                                                                            >  2:986126/1‑103 (MQ=255)

                                         tGATAATTACCTTTCCGGCGCTGGTAACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTA‑‑cccccccagac                                                                                                                            <  1:986126/108‑6 (MQ=255)

                                                     ttCCGGCGCTGGTAACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTAC‑CCCCCC‑AGACGAGGTAATTCATCAATCATTTCCAAAAGc                                                                                               <  2:117044/125‑1 (MQ=255)

                                                     ttCCGGCGCTGGTAACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTAC‑CCCCCC‑AGACGAGGTAATTCATCAATCATTTCCAAAAGc                                                                                               >  1:117044/1‑125 (MQ=255)

                                                     ttCCGGCGCTGGTAACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTAC‑CCCCCC‑AGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCtt                                                                                 >  1:555261/1‑139 (MQ=255)

                                                      tCCGGCGCTGGTAACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTAC‑CCCCCC‑AGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCttt                                                                                >  1:1414444/1‑139 (MQ=255)

                                                       ataagaaacaaaaCCACCCTTCACAACTCAATGCGACCCCTTACCTCACCAAAACCAGAAAATTTTGCTCGGTAAGCAAATTAC‑CCCCCC‑GGACAAGTTAATTCATC‑ATCATTTCCAAAAGCAACAATTATCTCTTTTa                                                                              <  2:1325722/128‑1 (MQ=255)

                                                        cGGCGCTGGTAACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTAC‑CCCCCC‑AGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTa                                                                              <  1:223397/139‑1 (MQ=255)

                                                         ggCGCTGGTAACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTAC‑CCCCCC‑AGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTAc                                                                             <  1:1684711/139‑1 (MQ=255)

                                                                    ccaccCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTAC‑CCCCCC‑AGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATc                                                                  >  2:106427/1‑139 (MQ=255)

                                                                        ccTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTAC‑CCCCCC‑AGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGc                                                              <  2:555261/139‑1 (MQ=255)

                                                                          ttCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTAC‑CCCCCC‑AGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCAt                                                            >  2:5921/1‑139 (MQ=255)

                                                                           tCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTAC‑CCCCCC‑AGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCAtt                                                           <  1:5921/139‑1 (MQ=255)

                                                                           tCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTAC‑CCCCCC‑AGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCAtt                                                           >  1:719451/1‑139 (MQ=255)

                                                                             aCGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTAC‑CCCCCC‑AGACGAGGTAATTCATC‑ATCCTTTCCAAAAGCAAAAATTAACTCTTTTAAAAATTtataacctttttctat                                                        >  1:1325722/1‑127 (MQ=255)

                                                                                    aaTGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTAC‑CCCCCC‑AGACGAGGTAATTCATCAATCATTTCCAAAAGcaac                                                                                            <  2:1216909/97‑1 (MQ=255)

                                                                                    aaTGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTAC‑CCCCCC‑AGACGAGGTAATTCATCAATCATTTCCAAAAGcaac                                                                                            >  1:1216909/1‑97 (MQ=255)

                                                                                    aaTGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTAC‑CCCCCC‑AGACGAGGTAATTCATCAATCATTTCCAAAAGcaa                                                                                             >  2:586014/1‑96 (MQ=255)

                                                                                    aaTGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTAC‑CCCCCC‑AGACGAGGTAATTCATCAATCATTTCCAAAAGcaa                                                                                             <  1:586014/96‑1 (MQ=255)

                                                                                      tGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTAC‑CCCCCC‑AGACGAGGTaa                                                                                                                     <  2:1472222/70‑1 (MQ=255)

                                                                                      tGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTAC‑CCCCCC‑AGACGAGGTaa                                                                                                                     >  1:1472222/1‑70 (MQ=255)

                                                                                      tGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTAC‑CCCCCC‑AGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTAc                                                                             >  1:394513/1‑110 (MQ=255)

                                                                                      tGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTAC‑CCCCCC‑AGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTAc                                                                             <  2:394513/110‑1 (MQ=255)

                                                                                          aCCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTAC‑CCCCCC‑AGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCATTAGCATCCGTCTCAGc                                            <  2:585212/139‑1 (MQ=255)

                                                                                           ccGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTAC‑CCCCCC‑AGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCATTAGCATCCGTCTCAGCt                                           >  2:1613217/1‑139 (MQ=255)

                                                                                           ccGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTAC‑CCCCCC‑AGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCATTAGCATCCGTCTCAGCt                                           >  1:1426142/1‑139 (MQ=255)

                                                                                           ccGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTAC‑CCCCCC‑AGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCATTAGCATCCGTCTCAGCt                                           >  1:1382052/1‑139 (MQ=255)

                                                                                           ccGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTAC‑CCCCCC‑AGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCATTAGCATCCGTCTCAGCt                                           >  1:1003216/1‑139 (MQ=255)

                                                                                              cTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTAC‑CCCCCC‑AGACGAGGTAATtcat                                                                                                                <  1:1469067/67‑1 (MQ=255)

                                                                                              cTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTAC‑CCCCCC‑AGACGAGGTAATtcat                                                                                                                >  2:1469067/1‑67 (MQ=255)

                                                                                               ttACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTAC‑CCCCCC‑AGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCATTAGCATCCGTCTCAGCTGGGc                                       <  2:719451/139‑1 (MQ=255)

                                                                                                tACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTA‑‑cccccccaga                                                                                                                             >  1:28305/1‑48 (MQ=255)

                                                                                                tACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTA‑‑cccccccaga                                                                                                                             <  2:28305/52‑5 (MQ=255)

                                                                                                      aCCAAAACCAGTAAATATTGCTCGGGTAGCAAATTAC‑CCCCCC‑AGACAAGGAAATTCATCAATAATTTCAAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGAATTAGCATCCGTCTCAGCTGGCCAAAATGa                                >  2:747549/1‑139 (MQ=255)

                                                                                                       ccAAAACCAGTAAATATTGCTCGGGTAGCAAATTAC‑CCCCCC‑AGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCATTAGCATCCGTCTCAGCTGGGCACAATGAt                               <  2:1382052/139‑1 (MQ=255)

                                                                                                        cAAAACCAGTAAATATTGCTCGGGTAGCAAATTAC‑CCCCCC‑AGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCATTAGCATCCGTCTCAGCTGGGCACAATGAtt                              <  2:1414444/139‑1 (MQ=255)

                                                                                                           aaCCAGTAAATATTGCTCGGGTAGCAAATTAC‑CCCCCC‑AGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTatat                                                                   >  1:1385105/1‑99 (MQ=255)

                                                                                                           aaCCAGTAAATATTGCTCGGGTAGCAAATTAC‑CCCCCC‑AGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTatat                                                                   <  2:1385105/99‑1 (MQ=255)

                                                                                                                 tAAATATTGCTCGGGTAGCAAATTAC‑CCCCCC‑AGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCATTAGCATCCGTCTCAGCTGGGCACAATGATTACTTTATTg                     <  1:106427/139‑1 (MQ=255)

                                                                                                                       ttGCTCGGGTAGCAAATTAC‑CCCCCC‑AGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCATTAGCATCCGTCTCAGCTGGGCACAATGATTACTTTATTGgtagta               >  2:274445/1‑139 (MQ=255)

                                                                                                                       ttGCTCGGGTAGCAAATTAC‑CCCCCC‑AGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCATTAGCATCCGTCTCAGCTGGGCACAATGATTACTTTATTGgtagta               <  1:747549/139‑1 (MQ=255)

                                                                                                                        tGCTCGGGTAGCAAATTAC‑CCCCCC‑AGACGAGGTAATTCATCAATCATTTCCa                                                                                                    >  2:22753/1‑53 (MQ=255)

                                                                                                                        tGCTCGGGTAGCAAATTAC‑CCCCCC‑AGACGAGGTAATTCATCAATCATTTCCa                                                                                                    <  1:22753/53‑1 (MQ=255)

                                                                                                                        tGCTCGGGTAGCAAATTAC‑CCCCCC‑AGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAAtt                                                                        >  1:1117022/1‑81 (MQ=255)

                                                                                                                        tGCTCGGGTAGCAAATTAC‑CCCCCC‑AGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAAtt                                                                        <  2:1117022/81‑1 (MQ=255)

                                                                                                                        tGCTCGGGTAGCAAATTAC‑CCCCCC‑AGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTtata                                                                    >  2:247948/1‑85 (MQ=255)

                                                                                                                        tGCTCGGGTAGCAAATTAC‑CCCCCC‑AGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTtata                                                                    <  1:247948/85‑1 (MQ=255)

                                                                                                                        tGCTCGGGTAGCAAATTAC‑CCCCCC‑AGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCATTAGCATCCGTCTCAGCTGGGCACAATGAt                               <  2:381161/122‑1 (MQ=255)

                                                                                                                        tGCTCGGGTAGCAAATTAC‑CCCCCC‑AGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCATTAGCATCCGTCTCAGCTGGGCACAATGAt                               >  1:381161/1‑122 (MQ=255)

                                                                                                                        tGCTCGGGTAGCAAATTA‑‑CCCCCCAAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCTTTAGCATCCGTCTCAGCTGGGCACAATGATTACTTTATTGTTAGTaa              >  2:1608851/1‑139 (MQ=255)

                                                                                                                           tCGGGTAGCAAATTAC‑CCCCCC‑AGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCAt                                                            <  2:948110/90‑1 (MQ=255)

                                                                                                                           tCGGGTAGCAAATTAC‑CCCCCC‑AGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCAt                                                            >  1:948110/1‑90 (MQ=255)

                                                                                                                                  gCAAATTACCCCCCCC‑AGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCATTAGCATCCGTCTCAGCTGGGCACAATGATTACTTTATTGGTAGTAAca            >  1:355549/1‑132 (MQ=255)

                                                                                                                                  gCAAATTACCCCCCCC‑AGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCATTAGCATCCGTCTCAGCTGGGCACAATGATTACTTTATTGGTAGTAAca            <  2:355549/132‑1 (MQ=255)

                                                                                                                                   cAAATTAC‑CCCCCC‑AGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTa                                                                              <  2:1071776/64‑1 (MQ=255)

                                                                                                                                   cAAATTAC‑CCCCCC‑AGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTa                                                                              >  1:1071776/1‑64 (MQ=255)

                                                                                                                                    aaaTTAC‑CCCCCC‑AGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCATTAGCATCCGTCTCAGCTGGGCACAATGATTACTTTATTGGTAGTAACATCATTACcag  <  2:1003216/139‑1 (MQ=255)

                                                                                                                                    aaaTTAC‑CCCCCC‑AGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCATTAGCATCCGTCTCAGCTGGGCACAATGATTACTTTATTGGTAGTAACATCATTACcag  <  2:1426142/139‑1 (MQ=255)

TTCGCCGCCTCTTAATAATGACATTGCTGCAACCAAACCATTGATAATTACCTTTCCGGCGCTGGTAACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAATTA‑‑CCCCCC‑AGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCATTAGCATCCGTCTCAGCTGGGCACAATGATTACTTTATTGGTAGTAACATCATTACCAG  >  NC_000913/2484754‑2485023

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 16 ≤` `ATCG/ATCG` `< 31 ≤` `ATCG/ATCG` `< 38 ≤` `ATCG/ATCG` `< 40 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A