Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A8 F1 I1 R1
|
771 |
44.8 |
2153074 |
94.1% |
2026042 |
109.1 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,484,897 |
(C)6→7 |
coding (524/3594 nt) |
evgS → |
hybrid sensory histidine kinase in two‑component regulatory system with EvgA |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,484,891 | 1 | . | C | 98.4%
| 223.2
/ ‑3.9
| 64 | coding (518/3594 nt) | evgS | hybrid sensory histidine kinase in two‑component regulatory system with EvgA |
| Reads supporting (aligned to +/- strand): ref base . (0/1); new base C (31/32); total (31/33) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
TTCGCCGCCTCTTAATAATGACATTGCTGCAACCAAACCATTGATAATTACCTTTCCGGCGCTGGTAACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAAT‑TA‑CCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCATTAGCATCCGTCTCAGCTGGGCACAATGATTACTTTATTGGTAGTAACATCATTAC > NC_000913/2484754‑2485020
|
ttCGCCGCCTCTTAATAATGACATTGCTGCAACCAAACCATTGATAATTACCTTTCCGGCGCTGGTAACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAAT‑TA‑c > 1:935636/1‑139 (MQ=255)
ttCGCCGCCTCTTAATAATGACATTGCTGCAACCAAACCATTGATAATTACCTTTCCGGCGCTGGTAACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAAT‑TA‑c < 2:617821/139‑1 (MQ=255)
gccgccTCTTAATAATGACATTGCTGCAACCAAACCATTGATAATTACCTTTCCGGCGCTGGTAACCACCCTTCCCGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAAT‑TA‑cccc > 2:793838/1‑139 (MQ=255)
cgccTCTTAATAATGACATTGCTGCAACCAAACCATTGATAATTACCTTTCCGGCGCTGGTAACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAAT‑TA‑cccccc > 2:962220/1‑139 (MQ=255)
tctTAATAATGACATTGCTGCAACCAAACCATTGATAATTACCTTTCCGGCGCTGGTAACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAAT‑TA‑cccccccaga < 1:962220/139‑5 (MQ=255)
tctTAATAATGACATTGCTGCAACCAAACCATTGATAATTACCTTTCCGGCGCTGGTAACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAAT‑TA‑cccccccaga < 1:178108/139‑5 (MQ=255)
ttAATAATGACATTGCTGCAACCAAACCATTGATAATTACCTTTCCGGCGCTGGTAACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAAT‑TACCCCCCCAGACg < 1:179216/139‑1 (MQ=255)
taataaTGACATTGCTGCAACCAAACCATTGATAATTACCTTTCCGGCGCTGGTAACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAAT‑TACCCCCCCAGACGa > 2:513827/1‑139 (MQ=255)
aatGACATTGCTGCAACCAACCCATTGATAATTACCTTTCCGGCGCTGGTAACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAAT‑TACCCCCCCAGACGAGGTa < 1:820228/139‑1 (MQ=255)
tGACATTGCTGCAACCAAACCATTGATAATTACCTTTCCGGCGCTGGTAACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAAT‑TA‑cccccccaga > 2:866882/1‑126 (MQ=255)
tGACATTGCTGCAACCAAACCATTGATAATTACCTTTCCGGCGCTGGTAACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAAT‑TA‑cccccccaga < 1:866882/130‑5 (MQ=255)
aCATTGCTGCAACCAAACCATTGATAATTACCTTTCCGGCGCTGGTAACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAAT‑TACCCCCCCAGACGAGGTAATtc > 1:267214/1‑139 (MQ=255)
ttGCTGCAACCAAACCATTGATAATTACCTTTCCGGCGCTGGTAACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAAT‑TA‑ccccc < 1:943813/120‑1 (MQ=255)
ttGCTGCAACCAAACCATTGATAATTACCTTTCCGGCGCTGGTAACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAAT‑TA‑ccccc > 2:943813/1‑120 (MQ=255)
ctgcAACCAAACCATTGATAATTACCTTTCCGGCGCTGGTAACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAAT‑TA‑c > 1:651546/1‑113 (MQ=255)
ctgcAACCAAACCATTGATAATTACCTTTCCGGCGCTGGTAACCACCCTTCACGACCCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAAT‑TA‑c < 2:651546/113‑1 (MQ=255)
tgcAACCAAACCATTGATAATTACCTTTCCGGCGCTGGTAACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAAT‑TACCCCCCCAGACGAGGTAATTCatcaatc > 2:136467/1‑139 (MQ=255)
accaaaccaTTGATAATTACCTTTCCGGCGCTGGTAACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAAT‑TACCCCCCCAGACGAGGTAATTCATCAATCAttt > 2:511918/1‑139 (MQ=255)
accaTTGATAATTACCTTTCCGGCGCTGGTAACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAAT‑TACCCCCCCAGACGAGGTAATTCATCAATCATTTCCaaa > 1:629063/1‑139 (MQ=255)
aTTGATAATTACCTTTCCGGCGCTGGTAACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAAT‑TACCCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGc < 1:454000/139‑1 (MQ=255)
ttGATAATTACCTTTCCGGCGCTGGTAACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAAT‑TACCCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGca > 2:308544/1‑139 (MQ=255)
ttGATAATTACCTTTCCGGCGCTGGTAACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAAT‑TACCCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGca < 2:1013395/139‑1 (MQ=255)
aTTACCTTTCCGGCGCTGGTAACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAAT‑TACCCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAAtt < 2:199415/139‑1 (MQ=255)
ttACCTTTCCGGCGCTGGTAACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAAT‑TACCCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTa > 2:300778/1‑139 (MQ=255)
tACCTTTCCGGCGCTGGTAACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAAT‑TACCCCCCCAGACGAGGTa < 1:1034898/107‑1 (MQ=255)
tACCTTTCCGGCGCTGGTAACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAAT‑TACCCCCCCAGACGAGGTa > 2:1034898/1‑107 (MQ=255)
tACCTTTCCGGCGCTGGTAACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAAT‑TACCCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTAt < 1:511918/139‑1 (MQ=255)
tACCTTTCCGGCGCTGGTAACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAAT‑TACCCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTAt > 1:330319/1‑139 (MQ=255)
aCCTTTCCGGCGCTGGTAACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAAT‑TACCCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTAtc < 1:513827/139‑1 (MQ=255)
ttCCGGCGCTGGTAACCACCCTTCACGACTCAATGCGACCGCTTCCCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAAT‑TACCCCCCCAGGCGAGGTAATTCATCAATAATTTCCAAAAGCAACAATTATCTCtt > 2:980382/1‑139 (MQ=255)
tCCGGCGCTGGTAACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAAT‑TACCCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCttt > 2:746364/1‑139 (MQ=255)
accaccCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAAT‑TACCCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTatat < 2:935636/139‑1 (MQ=255)
ccaccaTTCACGACTCAATGCGACCTCTTACCTCACCAAAACCAGTAAACATTGCTAGGGTAGCAAAT‑TACCCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTATTTTACAAATTTAGATc < 2:800928/139‑1 (MQ=255)
ccaccCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAAT‑TACCCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATc < 1:746364/139‑1 (MQ=255)
ccTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAAT‑TACCCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAAt < 1:41394/128‑1 (MQ=255)
ccTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAAT‑TACCCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAAt > 2:41394/1‑128 (MQ=255)
ttCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAAT‑TACCCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCAt > 2:815456/1‑139 (MQ=255)
ttCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAAT‑TACCCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCAt > 2:126208/1‑139 (MQ=255)
ttCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAAT‑TA‑ccccc < 1:112383/69‑1 (MQ=255)
ttCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAAT‑TA‑ccccc > 2:112383/1‑69 (MQ=255)
gACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAAT‑TACCCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCATTAGCa > 2:28531/1‑139 (MQ=255)
gACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAAT‑TACCCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCATTAGCa < 1:28531/139‑1 (MQ=255)
cTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAAT‑TACCCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCATTAGCATc > 1:168438/1‑139 (MQ=255)
tCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAAT‑TACCCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCATTAGCa > 1:976584/1‑136 (MQ=255)
tCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAAT‑TACCCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCATTAGCa < 2:976584/136‑1 (MQ=255)
tCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAAT‑TACCCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCATTAGCATcc > 1:478211/1‑139 (MQ=255)
tCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAAT‑TACCCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCATTAGCATcc > 1:8450/1‑139 (MQ=255)
aaTGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAAT‑TACCCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCATTAGCATCCGt < 2:330319/139‑1 (MQ=255)
tGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAAT‑TACCCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTatat > 2:556018/1‑120 (MQ=255)
tGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAAT‑TACCCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTatat < 1:556018/120‑1 (MQ=255)
ccGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAAT‑TACCCCCCCAGACg > 1:282177/1‑59 (MQ=255)
ccGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAAT‑TACCCCCCCAGACg < 2:282177/59‑1 (MQ=255)
ccGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAAT‑TACCCCCCCAGACGAGGt > 1:692169/1‑63 (MQ=255)
ccGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAAT‑TACCCCCCCAGACGAGGt < 2:692169/63‑1 (MQ=255)
cTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAAT‑TA‑cccccccaga > 1:653592/1‑50 (MQ=255)
cTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAAT‑TA‑cccccccaga < 2:653592/54‑5 (MQ=255)
ttACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAAT‑TACCCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCATTAGCATCCGTCTCAGCTGGGc < 2:267214/139‑1 (MQ=255)
tACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAAT‑TA‑c < 2:770272/43‑1 (MQ=255)
tACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAAT‑TA‑c > 1:770272/1‑43 (MQ=255)
aCCAAAACCAGTAAATATTGCTCGGGTAGCAAAT‑TACCCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCATTAGCATCCGTCTCAGCTGGGCACAATGa > 1:848112/1‑139 (MQ=255)
ccAAAACCAGTAAATATTGCTCGGGTAGCAAAT‑TACCCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCATTAGCATCCGTCTCAGCTGGGCACAATGAt < 1:300778/139‑1 (MQ=255)
cAAAACCAGTAAATATTGCTCGGGTAGCAAAT‑TACCCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCATTAGCATCCGTCTCAGCTGGGCACAATGAtt < 2:848112/139‑1 (MQ=255)
aaCCAGTAAATATTGCTCGGGTAGCAAAT‑TACCCCCCCAGACGAGGTAATTCATCAATCATTTcc > 2:35313/1‑65 (MQ=255)
aaCCAGTAAATATTGCTCGGGTAGCAAAT‑TACCCCCCCAGACGAGGTAATTCATCAATCATTTcc < 1:35313/65‑1 (MQ=255)
gTAAATATTGCTCGGGTAGCAAAT‑TACCCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTa > 1:744578/1‑83 (MQ=255)
gTAAATATTGCTCGGGTAGCAAAT‑TACCCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTa < 2:744578/83‑1 (MQ=255)
gTAAATATTGCTCGGGTAGCAAAT‑TACCCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCATTAGCATCCGTCTCAGCTGGGCACAATGATTACTTTAtt < 2:478211/139‑1 (MQ=255)
taaatagtacaagggTAGCAAATGTC‑CACCCCAGACTGGGTAATTCATCAATCATTCCCAAAAGCAAAATTTATCACTATTACAGATTTATCTCAGGCATTAGCATCCGTATCAGGTGGGCACAATGATTCCGTTATTg < 2:323498/127‑1 (MQ=255)
tAAATATTGCTCGGGTAGCAAAT‑TACCCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCATTAGCATCCGTCTCAGCTGGGCACAATGATTACTTTATTg < 2:8450/139‑1 (MQ=255)
aaaTATTGCTCGGGTAGCAAAT‑TACCCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTa > 1:257788/1‑81 (MQ=255)
aaaTATTGCTCGGGTAGCAAAT‑TACCCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTa < 2:257788/81‑1 (MQ=255)
aaaTATTGCTCGGGTAGCAAAT‑TACCCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCATTAGCATCCGTCTCAGCTGGGCACAATGATTACTTTATTgg < 1:1034016/139‑1 (MQ=255)
tGCTCGGGTAGCAAAT‑TACCCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCATTAGCATCCGTCTCAGCTGGGCACAATGATTACTTTATTGGTAGTaa < 1:126208/139‑1 (MQ=255)
gCTCGGGTAGCAAAT‑TACCCCCCCAGACGAGGTAATTCATCAATCATTTCCa < 2:740803/52‑1 (MQ=255)
gCTCGGGTAGCAAAT‑TACCCCCCCAGACGAGGTAATTCATCAATCATTTCCa > 1:740803/1‑52 (MQ=255)
gCTCGGGTAGCAAAT‑TACCCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCATTAGCATCCGTCTCAGCTGGGCACAATGATTACt < 2:587579/125‑1 (MQ=255)
gCTCGGGTAGCAAAT‑TACCCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCATTAGCATCCGTCTCAGCTGGGCACAATGATTACt > 1:587579/1‑125 (MQ=255)
tCGGGTAGCAAAT‑TACCCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCATTAGCATCCGTCTCAGCTGGGCACAATGATTACTTTATTGGTAGTAAcat > 1:542211/1‑139 (MQ=255)
gTAGCAAAT‑TACCCCCCCAGACGAGGTAATTCATCAATCATTTCCa < 2:4921/46‑1 (MQ=255)
gTAGCAAAT‑TACCCCCCCAGACGAGGTAATTCATCAATCATTTCCa > 1:4921/1‑46 (MQ=255)
gTAGCAAAT‑TACCCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCATTAGCATCCGTCTCAGCTGGGCACAATGATTACTTTATTGGTAGTAACATCAtt > 2:602986/1‑139 (MQ=255)
aGCAAAT‑TACCCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCATTAGCATCCGTCTCAGCTGGGCACAATGATTACTTTATTGGTAGTAACATCATTAc < 1:815456/139‑1 (MQ=255)
|
TTCGCCGCCTCTTAATAATGACATTGCTGCAACCAAACCATTGATAATTACCTTTCCGGCGCTGGTAACCACCCTTCACGACTCAATGCGACCGCTTACCTCACCAAAACCAGTAAATATTGCTCGGGTAGCAAAT‑TA‑CCCCCCAGACGAGGTAATTCATCAATCATTTCCAAAAGCAACAATTATCTCTTTTACAAATTTATATCAGGCATTAGCATCCGTCTCAGCTGGGCACAATGATTACTTTATTGGTAGTAACATCATTAC > NC_000913/2484754‑2485020
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
