Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A14 F1 I1 R1
|
770 |
68.5 |
3470224 |
91.7% |
3182195 |
103.4 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
380,022 |
(G)10→11 |
intergenic (‑141/+47) |
frmR ← / ← yaiO |
regulator protein that represses frmRAB operon/outer membrane protein |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 380,012 | 1 | . | G | 77.0%
| 163.8
/ 41.4
| 61 | intergenic (‑131/+57) | frmR/yaiO | regulator protein that represses frmRAB operon/outer membrane protein |
| Reads supporting (aligned to +/- strand): ref base . (7/7); new base G (31/16); total (38/23) |
| Fisher's exact test for biased strand distribution p-value = 3.51e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
CTGGGCATTTCGCACCTCATCATCTGCATGCAATATACTATAGGGGGGTATTCTATATGTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGA‑GGA‑A‑A‑‑‑GGGGGGGGGG‑‑CTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAAAATCATCGGTTGGGGTGTCGTAC > NC_000913/379874‑380135
|
cTGGGCATTTCGCACCTCATCATCTGCATGCAATATACTATAGGGGGGTATTCTATATGTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGA‑GGa‑a‑a > 2:161007/1‑139 (MQ=255)
tgcatgcaATATACTATGGGGGGGTATTCTATATGTCAATGAATACCCCCCTATAGTATATAACACTGGAGAAAAAAATTTATCCGGGGAATGTGGTCGGAAAACAAAGA‑GGA‑AGG‑‑‑GGGGGGGGGG‑‑CTAATCGGCAggg < 1:161007/139‑1 (MQ=255)
tgcaATATACTATAGGGGGGTATTCTATATGTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGA‑GGA‑A‑AG‑‑GGGGGGGGGG‑‑CTAATCGGCAGGGAAgg > 1:673618/1‑139 (MQ=255)
tgcaATATACTATAGGGGGGTATTCTATATGTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGA‑GGA‑A‑A‑‑‑GGGGGGGGGG‑‑CTAATCGGCAGGGAAGgc > 1:1296477/1‑139 (MQ=255)
acagataCTATAGGGGGGTTTTCTATATGTCAAAGCATACCCCCCTATAGTATAAAACACTGGGGAATAAAATTTATCCGGTGAAGGTGGTCGGAAAACAAAGG‑GGA‑AGG‑‑‑GGGGGGGGGG‑‑CTAATCGGCAGGGAAGgcc < 1:26462/135‑1 (MQ=255)
tataCTATAGGGGGGTATTCTATATGTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGA‑GGA‑A‑AG‑‑GGGGGGGGGG‑‑CTAATCGGCAGGGAAGgccgcc > 1:1342099/1‑139 (MQ=255)
aGGGGGGTATTTTATATGTCAAAGCATACCCCCCTATAGTAAATAACACTGGAGAATAAAAGTTATCCGGGGAATGTGGTCGGAAAACAAAGA‑GGA‑A‑AG‑‑GGGGGGGGGG‑‑CTAATCGGCAGGGAAGGCCGCCCCGGATAg < 2:1342099/139‑1 (MQ=255)
acaggTATTCTATATGTCAATGCATACCCCCCTATAGTATATAACTCTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGA‑GGA‑A‑AG‑‑GGGGGGGGGG‑‑CTAATCGGCAGGGAAGGCCGCCCCGGATAgcg < 1:398805/136‑1 (MQ=255)
gggTATTCTATATGTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGA‑GGA‑A‑AG‑‑GGGGGGGGGG‑‑CAAATCGGAAGGGAAGGCCGCCCCGGATAgctgt > 2:26462/1‑136 (MQ=255)
gggTATTCTATATGTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGA‑GGA‑A‑A‑‑‑ggggggg > 2:827891/1‑101 (MQ=255)
gggTATTCTATATGTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGA‑GGA‑A‑A‑‑‑ggggggg < 1:827891/101‑1 (MQ=255)
gggTATTCTATATGTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGA‑GGA‑A‑A‑‑‑ggggg > 2:31316/1‑99 (MQ=255)
gggTATTCTATATGTCAATGCATACCCCCCTATAGTATATAACACTGGAGAAAAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGA‑GGA‑A‑A‑‑‑ggggg < 1:31316/99‑1 (MQ=255)
tATTCTATATGTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGA‑GGA‑A‑AG‑‑GGGGGGGGGG‑‑CTAATCGGCAGGGAAGGCCGCCCCGGATAgcgggcgg > 1:734154/1‑139 (MQ=255)
gTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGC‑GGA‑A‑AG‑‑GGGGGGGGGG‑‑CGAATTGGCGGGGAAGGCGGCCCCGGATAGGGGGGGGCAGAAgctgt > 2:398805/1‑135 (MQ=255)
tGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGA‑GGA‑A‑AG‑‑GGGGGGGGGG‑‑CTAAGGGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGaa > 2:1400157/1‑139 (MQ=255)
tGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGA‑GGA‑A‑AG‑‑GGGGGGGGGG‑‑CAAATCGGCAGGGAAGGCCCCCCCGGATAGCGGGCGGCAGAAGGACTAAGaa > 2:382619/1‑139 (MQ=255)
tGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGA‑GGA‑A‑A‑‑‑GGGGGGGGGG‑‑CTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAAt > 2:1421041/1‑139 (MQ=255)
aCCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGA‑GGA‑A‑A‑‑‑gggggg < 2:105430/77‑1 (MQ=255)
aCCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGA‑GGA‑A‑A‑‑‑gggggg > 1:105430/1‑77 (MQ=255)
ccccccTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGA‑GGA‑A‑AG‑‑GGGGGGGGGG‑‑CTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCa > 2:310211/1‑139 (MQ=255)
ccTATAGTATATAACACTGGGGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGA‑GGa‑a‑a < 2:945764/66‑1 (MQ=255)
ccTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGA‑GGa‑a‑a > 1:945764/1‑66 (MQ=255)
ccTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGA‑GGA‑A‑AG‑‑GGGGGGGGGG‑‑CTAATCGGCAGGGAAGGCCCCCCCGGAAAGCGGGCGGCAGAAGGAATCAAAATTTCCAGGTc > 1:1027897/1‑139 (MQ=255)
tatataACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGA‑GGA‑A‑AGGGGGGGGGGGGG‑‑CTAATCGGCGGGGAAGGCCCCCCCGGATAGGGGGCGGCAAAAGGAAACAGAATTTCCAGGTAAGACg > 2:787722/1‑139 (MQ=255)
tatataACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGA‑GGA‑A‑A‑‑‑GGGGGGGGGG‑‑CTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGc > 1:192871/1‑139 (MQ=255)
tttaACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGA‑GGA‑A‑AG‑‑GGGGGGGGGG‑‑CTAATCGGCAGGGAAgg < 1:1564855/83‑1 (MQ=255)
tataACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGA‑GGA‑A‑AG‑‑GGGGGGGGGG‑‑CTAATCGGCAGGGAAgg > 2:1564855/1‑85 (MQ=255)
tataACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGA‑GGA‑A‑AG‑‑GGGGGGGGGG‑‑CTAATCGGCAGGGAAGGCCGCCCCGGTTAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCt > 2:375825/1‑139 (MQ=255)
tataACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGA‑GGA‑A‑AG‑‑GGGGGGGGGG‑‑CTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCt < 1:310211/139‑1 (MQ=255)
tataACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGA‑GGA‑A‑AG‑‑GGGGGGGGGG‑‑CTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCt > 1:81921/1‑139 (MQ=255)
tataACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGA‑GGA‑A‑AG‑‑GGGGGGGGGG‑‑CTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTAAGACGGGCt > 2:960325/1‑139 (MQ=255)
ataACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGA‑GGA‑A‑A‑‑‑GGGGGGGGGG‑‑CTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGc < 2:1574222/139‑1 (MQ=255)
taACACTGGAGAATAAAATTTATCCGGTGAATGTGGGCGGAAAACAAAGA‑GGA‑A‑AG‑‑GGGGGGGGGG‑‑CTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGc < 2:81921/139‑1 (MQ=255)
taACACAGGAGAATAAAATTTATCCGGGGAATGTGGGCGGAAAATAAAGA‑GGA‑A‑AG‑‑GGGGGGGGGG‑‑CTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGc < 2:673618/139‑1 (MQ=255)
aaCACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGA‑GGA‑A‑AG‑‑GGGGGGGGGG‑‑CAAATGGGCGGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAGGGAATAAGAATTTCCAGGTCAGCCGGGCTGCa > 1:1653936/1‑139 (MQ=255)
cacTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGA‑GGA‑A‑AG‑‑GGGGGGGGGG‑‑CTAATCGGCAGGGAAgg < 2:1232134/80‑1 (MQ=255)
cacTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGA‑GGA‑A‑AG‑‑GGGGGGGGGG‑‑CTAATCGGCAGGGAAgg > 1:1232134/1‑80 (MQ=255)
cacTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGA‑GGA‑A‑AG‑‑GGGGGGGGGG‑‑CTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAg > 2:167073/1‑139 (MQ=255)
tGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGA‑GGA‑A‑AG‑‑GGGGGGGGGG‑‑CTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACgg < 2:950343/128‑1 (MQ=255)
tGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGA‑GGA‑A‑AG‑‑GGGGGGGGGG‑‑CTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATAAGAATTTCCGGGTCAGACgg > 1:950343/1‑128 (MQ=255)
gggaAAAAAATTTATCCGGGCAATGTGTTCGGAAAACAAAGA‑GGA‑A‑AG‑‑GGGGGGGGGG‑‑CTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCa < 1:382619/137‑1 (MQ=255)
gagaATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGA‑GGA‑A‑AGG‑GGGGGGGGGG‑‑CTAATGGGCAGGGAAGgccgcc > 2:1617006/1‑81 (MQ=255)
gagaATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGA‑GGA‑A‑AG‑‑GGGGGGGGGG‑‑CTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGCATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCa > 1:1090478/1‑139 (MQ=255)
gagaATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGA‑GGA‑A‑AG‑‑GGGGGGGGGG‑‑CTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGa > 2:1532982/1‑109 (MQ=255)
gagaATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGA‑GGA‑A‑AG‑‑GGGGGGGGGG‑‑CTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCa > 1:821723/1‑139 (MQ=255)
gagaATAAAATTTATCCGGGGAATGTGGTGGGAAAACAAAGA‑GGAGA‑G‑‑‑GGGGGGGGGG‑‑CTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGa < 1:1532982/109‑1 (MQ=255)
gagaAAAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGA‑GGA‑A‑AGG‑GGGGGGGGGG‑‑CTAATCGGCAGGGAAGgccgcc < 1:1617006/81‑1 (MQ=255)
tAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGA‑GGA‑A‑A‑‑‑gggggggggggcta > 1:995952/1‑52 (MQ=255)
tAAAATTTATCCGGTGAATGTGGGCGGAAAACAAAGA‑GGG‑A‑A‑‑‑gggggggggggcta < 2:995952/56‑5 (MQ=255)
aaaaTTTATCCGGTGAATGTGGTCGGAAAACAAAGA‑GGA‑A‑A‑‑‑GGGGGGGGGG‑‑CTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGtt > 1:1249698/1‑139 (MQ=255)
aTCCGGTGAATGTGGTCGGAAAACAAAGA‑GGA‑A‑AG‑‑GGGGGGGGGG‑‑CTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGa < 2:388687/110‑1 (MQ=255)
aTCCGGTGAATGTGGTCGGAAAACAAAGA‑GGA‑A‑AG‑‑GGGGGGGGGG‑‑CTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGa > 1:388687/1‑110 (MQ=255)
aTCCGGTGAATGTGGTCGGAAAACAAAGA‑GGA‑A‑AG‑‑GGGGGGGGGG‑‑CTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGc > 2:1475752/1‑118 (MQ=255)
aTCCGGTGAAAGTGGTCGGAAAACAAAGA‑GGA‑A‑AG‑‑GGGGGGGGGG‑‑CTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGc < 1:1475752/118‑1 (MQ=255)
tCCGGTGAATGTGGTCGGAAAACAAAGA‑GGA‑A‑A‑‑‑GGGGGGGGGG‑‑CTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAAAatcat < 2:1296477/139‑1 (MQ=255)
tGAATGTGGTCGGAAAACAAAGA‑GGA‑A‑A‑‑‑GGGGGGGGGGGCCTAAACGGCAGGGAAGGCCGCCCCGGA‑AGCGGGCGGCAGAAGGAATCAAAATTTTCAGGTCCAGCGGGCTGCAAGTTGCCGACCGTTAGAataatcagc > 2:233141/1‑136 (MQ=255)
aTGTGGTCGGAAAACAAAGA‑GGA‑A‑A‑‑‑GGGGGGGGGG‑‑CTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAAAATCATCGGTTggg < 2:1249698/139‑1 (MQ=255)
tgtgGTCGGAAAACAAAGA‑GGA‑A‑AG‑‑GGGGGGGGGG‑‑CTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAAAATCATCGGTTggg > 1:50219/1‑139 (MQ=255)
ggTCGGAAAACAAAGG‑GGA‑A‑AG‑‑GGGGGGGGGG‑‑CTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGa < 2:907948/97‑1 (MQ=255)
ggTCGGAAAACAAAGA‑GGA‑A‑AG‑‑GGGGGGGGGG‑‑CTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGa > 1:907948/1‑97 (MQ=255)
ggcGGAAAACAAAGAGGGA‑A‑G‑‑‑GGGGGGGGGG‑‑CTAATCGGCAGGGAAgg < 1:204386/46‑1 (MQ=37)
gTCGGAAAACAAAGA‑GGA‑A‑AG‑‑GGGGGGGGGG‑‑CTAATCGGCAGGGAAgg > 2:204386/1‑48 (MQ=255)
tCGGAAAACAAAGA‑GGA‑A‑AG‑‑GGGGGGGGGG‑‑CTAATCGGCAGGGAAGGCCGCCCCGGATAgcgggc > 1:1213944/1‑65 (MQ=255)
tCGGAAAACAAAGA‑GGA‑A‑AG‑‑GGGGGGGGGG‑‑CTAATCGGCAGGGAAGGCCGCCCCGGATAgcgggc < 2:1213944/65‑1 (MQ=255)
tCGGAAAACAAAGA‑GGA‑A‑AG‑‑GGGGGGGGGG‑‑CTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAAAATCATCGGTTGGGGTGTc > 1:549874/1‑139 (MQ=255)
tCGGAAAACAAAGA‑GGA‑A‑AG‑‑GGGGGGGGGG‑‑CTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAAAATCATCGGTTGGGGTGTc > 2:1545121/1‑139 (MQ=255)
tCGGAAAACAAAGA‑GGA‑A‑A‑‑‑GGGGGGGGGGC‑CAAATCGGCAGGGAGGGCCGCCCAGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGCCGGGCTGCAAGTTGCAGACCGTTAAAATCATCGGTTGGGGTGTc > 2:1565061/1‑139 (MQ=255)
cGGAAAACAAAGA‑GGA‑A‑AG‑‑GGGGGGGGGG‑‑CTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGa < 2:649735/80‑1 (MQ=255)
cGGAAAACAAAGA‑GGA‑A‑AG‑‑GGGGGGGGGG‑‑CTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGa > 1:649735/1‑80 (MQ=255)
gAAAACAAAGA‑GGA‑A‑AG‑‑GGGGGGGGGG‑‑CTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAAAATCATCGGTTGGGGTGTCGTa < 2:50219/139‑1 (MQ=255)
gAAAACAAAGA‑GGA‑A‑A‑‑‑GGGGGGGGGC‑‑CTAATCGGCAGGGAAGGCCGCCCCGGATGGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCGGCCGGGCTGCAAGTTGCAGCCGGTTAAATTAATCGGTTGGGGTGCCGTAc > 2:1476710/1‑139 (MQ=255)
aaaGA‑GGA‑A‑AGG‑GGGGGGGGGG‑‑CTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGc < 2:908486/95‑1 (MQ=255)
aaaGA‑GGA‑A‑AGG‑GGGGGGGGGG‑‑CTAATCGGCAGGGAAGGCCCCCCCGGATAGGGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGc > 1:908486/1‑95 (MQ=255)
|
CTGGGCATTTCGCACCTCATCATCTGCATGCAATATACTATAGGGGGGTATTCTATATGTCAATGCATACCCCCCTATAGTATATAACACTGGAGAATAAAATTTATCCGGTGAATGTGGTCGGAAAACAAAGA‑GGA‑A‑A‑‑‑GGGGGGGGGG‑‑CTAATCGGCAGGGAAGGCCGCCCCGGATAGCGGGCGGCAGAAGGAATCAGAATTTCCAGGTCAGACGGGCTGCAAGTTGCAGACCGTTAAAATCATCGGTTGGGGTGTCGTAC > NC_000913/379874‑380135
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
