Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
730 |
35.1 |
2107516 |
91.4% |
1926269 |
80.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,371,572 |
C→T |
G335S (GGT→AGT) |
nanT ← |
N‑acetylneuraminate:H(+) symporter |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,371,572 | 0 | C | T | 100.0%
| 119.9
/ NA
| 35 | G335S (GGT→AGT) | nanT | N‑acetylneuraminate:H(+) symporter |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (17/18); total (17/18) |
CAAATACCGGAATAATCAGCAGCTGCGAGGCCAGCAGGCTACAAACGTACGCTTTGCGGGTTCCCAGCCAGTCACCGAGGAAGCCACCTACGCAGCATCCCACCGCCGCGCCAAAGCCACTAAAGAACAGCACATTGGCTACAGTATGCGG > NC_000913/3371497‑3371647
|
cAAATACCGGAATAATCAGCAGCTGCGAGGCCAGCAGGCTACAAACGTACGCTTTGCGGGTTCCCAGCCAGTCACTGAgg > 1:637364/1‑80 (MQ=255)
aaaTACCGGAATAATCAGCAGCTGCGAGGCCAGCAGGCTACAAACGTACGCTTTGCGGGTTCCCAGCCAGTCACTGAgg > 1:637379/1‑79 (MQ=255)
cGGAATAATCAGCAGCTGCGAGGCCAGCAGGCTACAAACGTACGCTTTGCGGGTTCCCAGCCAGTCACTGAGGAAGCCAcc < 2:637289/81‑1 (MQ=255)
ggAATAATCAGCAGCTGCGAGGCCAGCAGGCTACAAACGTACGCTTTGCGGGTTCCCAGCCAGTCACTGAGGAAGCCAcc > 2:637355/1‑80 (MQ=255)
aataatCAGCAGCTGCGAGGCCAGCAGGCTACAAACGTACGCTTTGCGGGTTCCCAGCCAGTCACTGAGGAAGCCACCTAc < 1:637291/81‑1 (MQ=255)
aataatCAGCAGCTGCGAGGCCAGCAGGCTACAAACGTACGCTTTGCGGGTTCCCAGCCAGTCACTGAGGAAGCCACCTAc < 2:637290/81‑1 (MQ=255)
atCAGCAGCTGCGAGGCCAGCAGGCTACAAACGTACGCTTTGCGGGTTCCCAGCCAGTCACTGAGGAAGCCACCTACgcag > 2:637363/1‑81 (MQ=255)
atCAGCAGCTGCGAGGCCAGCAGGCTACAAACGTACGCTTTGCGGGTTCCCAGCCAGTCACTGAGGAAGCCACCTACgcag > 2:637347/1‑81 (MQ=255)
cagcagCTGCGAGGCCAGCAGGCTACAAACGTACGCTTTGCGGGTTCCCAGCCAGTCACTGAGGAAGCCACCTACgcagca > 1:637367/1‑81 (MQ=255)
agcTGCGAGGCCAGCAGGCTACAAACGTACGCTTTGCGGGTTCCCAGCCAGTCACTGAGGAAGCCACCTACGCAGCATcc > 2:637377/1‑80 (MQ=255)
agcTGCGAGGCCAGCAGGCTACAAACGTACGCTTTGCGGGTTCCCAGCCAGTCACTGAGGAAGCCACCTACGCAGCATcc > 1:637362/1‑80 (MQ=255)
gAGGCCAGCAGGCTACAAACGTACGCTTTGCGGGTTCCCAGCCAGTCACTGAGGAAGCCACCTACGCGGCATCCCAccgcc > 1:637356/1‑81 (MQ=255)
gAGGCCAGCAGGCTACAAACGTACGCTTTGCGGGTTCCCAGCCAGTCACTGAGGAAGCCACCTACGCAGCATCCCAccgcc < 1:637292/81‑1 (MQ=255)
gAGGCCAGCAGGCTACAAACGTACGCTTTGCGGGTTCCCAGCCAGTCACTGAGGAAGCCACCTACGCAGCATCCCAccgcc > 1:637370/1‑81 (MQ=255)
gAGGCCAGCAGGCTACAAACGTACGCTTTGCGGGTTCCCAGCCAGTCACTGAGGAAGCCACCTACGCAGCATCCCAccgcc < 1:637293/81‑1 (MQ=255)
aGGCCAGCAGGCTACAAACGTACGCTTTGCGGGTTCCCAGCCAGTCACTGAGGAAGCCACCTACGCAGCATCCCAccgccg > 2:637366/1‑81 (MQ=255)
gCCAGCAGGCTACAAACGTACGCTTTCCGGGTTCCCAGCCAGTCACTGAGGAAGCCACCTACGCAGCATCCCACCGCcgcg < 1:637294/81‑1 (MQ=255)
ccAGCAGGCTACAAACGTACGCTTTGCGGGTTCCCAGCCAGTCACTGAGGAAGCCACCTACGCAGCATCCCACCGCCgcgc < 1:637295/81‑1 (MQ=255)
gcagGCTACAAACGTACGCTTTGCGGGTTCCCAGCCAGTCACTGAGGAAGCCACCTACGCAGCATCCCACCGCCGCGCCaa < 2:637296/81‑1 (MQ=255)
gcagGCTACAAACGTACGCTTTGCGGGTTCCCAGCCAGTCACTGAGGAAGCCACCTACGCAGCATCCCACCGCCGCGCCaa < 1:637297/81‑1 (MQ=255)
gcagGCTACAAACGTACGCTTTGCGGGTTCCCAGCCAGTCACTGAGGAAGCCACCTACGCAGCATCCCACCGCCGCGCCa > 2:637394/1‑80 (MQ=255)
ggCTACAAACGTACGCTTTGCGGGTTCCCAGCCAGTCACTGAGGAAGCCACCTACGCAGCATCCCACCGCCGCGCCAAAGc < 1:637298/81‑1 (MQ=255)
cAAACGTACGCTTTGCGGGTTCCCAGCCAGTCACTGAGGAAGCCACCTACGCAGCATCCCACCGCCGCGCCAAAGCCAc < 1:637299/79‑1 (MQ=255)
aaaCGTACGCTTTGCGGGTTCCCAGCCAGTCACTGAGGAAGCCACCTACGCAGCATCCCACCGCCGCGCCAAAGCCACTa > 2:637372/1‑80 (MQ=255)
aCGTACGCTTTGCGGGTTCCCAGCCAGTCACTGAGGAAGCCACCTACGCAGCATCCCACCGCCGCGCCAAAGCCACTAAAg < 2:637300/81‑1 (MQ=255)
cGCTTTGCGGGTTCCCAGCCAGTCACTGAGGAAGCCACCTACGCAGCATCCCACCGCCGCGCCAAAGCCACTAAAGAACAg < 2:637301/81‑1 (MQ=255)
gCTTTGCGGGTTCTCAGCCAGTGACTGAGGAAGCCACCTACGCAGCATCCCACCGCCGCGCCAAAGCCACTAAAGACCAg > 2:637376/1‑80 (MQ=255)
tGCGGGTTCCCAGCCAGTCACTGAGGAAGCCACCTACGCAGCATCCCACCGCCGCGCCAAAGCCACTAAAGAACAGcac < 1:637302/79‑1 (MQ=255)
gCGGGTTCCCAGCCAGTCACTGAGGAAGCCACCTACGCAGCATCCCACCGCCGCGCCAAAGCCACTAAAGAACAGCACAt < 2:637303/80‑1 (MQ=255)
cccAGCCAGTCACTGAGGAAGCCACCTACGCAGCATCCCACCGCCGCGCCAAAGCCACTAAAGAACAGCACATTGGCTAc < 1:637304/80‑1 (MQ=255)
ccagccagTCACTGAGGAAGCCACCTACGCAGCATCCCACCGCCGCGCCAAAGCCACTAAAGAACAGCACATTGGCTACAg > 1:637374/1‑81 (MQ=255)
agccagTCACTGAGGAAGCCACCTACGCAGCATCCCACCGCCGCGCCAAAGCCACTAAAGAACAGCACATTGGCTACAGTa > 2:637385/1‑81 (MQ=255)
cagTCACTGAGGAAGCCACCTACGCAGCATCCCACCGCCGCGCCAAAGCCACTAAAGAACAGCACATTGGCTACAGTATGc < 2:637305/81‑1 (MQ=255)
agTCACTGAGGAAGCCACCTACGCAGCATCCCACCGCCGCGCCAAAGCCACTAAAGAACAGCACATTGGCTACAGTATGCg > 2:637371/1‑81 (MQ=255)
gTCACTGAGGAAGCCACCTACGCAGCATCCCACCGCCGCGCCAAAGCCACTAAAGAACAGCACATTGGCTACAGTATGCgg < 1:637306/81‑1 (MQ=255)
|
CAAATACCGGAATAATCAGCAGCTGCGAGGCCAGCAGGCTACAAACGTACGCTTTGCGGGTTCCCAGCCAGTCACCGAGGAAGCCACCTACGCAGCATCCCACCGCCGCGCCAAAGCCACTAAAGAACAGCACATTGGCTACAGTATGCGG > NC_000913/3371497‑3371647
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
