Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
690 |
31.8 |
1836723 |
97.1% |
1783458 |
80.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,371,572 |
C→T |
G335S (GGT→AGT) |
nanT ← |
N‑acetylneuraminate:H(+) symporter |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,371,572 | 0 | C | T | 100.0%
| 133.7
/ NA
| 37 | G335S (GGT→AGT) | nanT | N‑acetylneuraminate:H(+) symporter |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (21/16); total (21/16) |
CGCAAATACCGGAATAATCAGCAGCTGCGAGGCCAGCAGGCTACAAACGTACGCTTTGCGGGTTCCCAGCCAGTCACCGAGGAAGCCACCTACGCAGCATCCCACCGCCGCGCCAAAGCCACTAAAGAACAGCACATTGGCTACAGTATGCGGGT > NC_000913/3371495‑3371649
|
cGCAAATACCGGAATAATCAGCAGCTGCGAGGCCAGCAGGCTACAAACGTACGCTTTGCGGGTTCCCAGCCAGTCACTGAg > 2:573419/1‑81 (MQ=255)
gCAAATACCGGAATAATCAGCAGCTGCGAGGCCAGCAGGCTACAAACGTACGCTTTGCGGGTTCCCAGCCAGTCACTGAg < 1:573379/80‑1 (MQ=255)
gCAAATACCGGAATAATCAGCAGCTGCGAGGCCAGCAGGCTACAAACGTACGCTTTGCGGGTTCCCAGCCAGTCACTGAg > 2:573423/1‑80 (MQ=255)
cAAATACCGGAATAATCAGCAGCTGCGAGGCCAGCAGGCTACAAACGTACGCTTTGCGGGTTCCCAGCCAGTCACTGAgg > 1:573431/1‑80 (MQ=255)
cAAATACCGGAATAATCAGCAGCTGCGAGGCCAGCAGGCTACAAACGTACGCTTTGCGGGTTCCCAGCCAGTCACTGAgg > 2:573431/1‑80 (MQ=255)
aTACCGGAATAATCAGCAGCTGCGAGGCCAGCAGGCTACAAACGTACGCTTTGCGGGTTCCCAGCCAGTCACTGAGGAAGc > 1:573426/1‑81 (MQ=255)
aCCGGAATAATCAGCAGCTGCGAGGCCAGCAGGCTACAAACGTACGCTTTGCGTGTTCCCAGCCAGTCACTGAGGAAGCCa > 1:573435/1‑81 (MQ=255)
ggAATAATCAGCAGCTGCGAGGCCAGCAGGCTACAAACGTACGCTTTGCGGGTTCCCAGCCAGTCACTGAGGAAGCCAcc > 2:573427/1‑80 (MQ=255)
ggAATAATCAGCAGCTGCGAGGCCAGCAGGCTACAAACGTACGCTTTGCGGGTTCCCAGCCAGTCACTGAGGAAGCCAcc > 1:573430/1‑80 (MQ=255)
ataatCAGCAGCTGCGAGGCCAGCAGGCTACAAACGTACGCTTTGCGGGTTCCCAGCCTGTCACTGAGGAAGCCACCTACg > 2:573415/1‑81 (MQ=255)
atCAGCAGCTGCGAGGCCAGCAGGCTACAAACGTACGCTTTGCGGGTTCCCAGCCAGTCACTGAGGAAGCCACCTACgcag > 1:573442/1‑81 (MQ=255)
cagcTGCGAGGCCAGCAGGCTACAAACGTACGCTTTGCGGGTTCCCAGCCAGTCACTGAGGAAGCCACCTACGCAGCATcc < 2:573379/81‑1 (MQ=255)
agcTGCGAGGCCAGCAGGCTACAAACGTACGCTTTGCGGGTTCCCAGCCAGTCACTGAGGAAGCCACCTACGCAGCATcc > 2:573426/1‑80 (MQ=255)
agcTGCGAGGCCAGCAGGCTACAAACGTACGCTTTGCGGGTTCCCAGCCAGTCACTGAGGAAGCCACCTACGCAGCATcc > 1:573437/1‑80 (MQ=255)
gCGAGGCCAGCAGGCTACAAACGTACGCTTTGCGGGTTCCCAGCCAGTCACTGAGGAAGCCACCTACGCAGCATCCCAccg > 1:573425/1‑81 (MQ=255)
gAGGCCAGCAGGCTACAAACGTACGCTTTGCGGGTTCCCAGCCAGTCACTGAGGAAGCCACCTACGCAGCATCCCAccgcc < 2:573380/81‑1 (MQ=255)
cagcagGCTACAAACGTACGCTTTGCGGGTTCCCAGCCAGTCACTGAGGAAGCCACCTACGCAGCATCCCACCGCCgcgc > 1:573433/1‑80 (MQ=255)
agcagGCTACAAACGTACGCTTTGCGGGTTCCCAGCCAGTCACTGAGGAAGCCACCTACGCAGCATCCCACCGCCGCGCCa < 1:573382/81‑1 (MQ=255)
cAAACGTACGCTTTGCGGGTTCCCAGCCAGTCACTGAGGAAGCCACCTACGCAGCATCCCACCGCCGCGCCAAAGCCACt > 2:573445/1‑80 (MQ=255)
aaCGTACGCTTTGCGGGTTCCCAGCCAGTCACTGAGGAAGCCACCTACGCAGCATCCCACCGCCGCGCCAAAGCCACTa > 2:573443/1‑79 (MQ=255)
aCGTACGCTTTGCGGGTTCCCAGCCAGTCACTGAGGAAGCCACCTACGCAGCATCCCACCGCCGCGCCAAAGCCACTAAAg < 2:573382/81‑1 (MQ=255)
cGCTTTGCGGGTTCCCAGCCAGTCACTGAGGAAGCCACCTACGCAGCATCCCACCGCCGCGCCAAAGCCACTAAAGAACa < 2:573383/80‑1 (MQ=255)
cGCTTTGCGGGTTCCCAGCCAGTCACTGAGGAAGCCACCTACGCAGCATCCCACCGCCGCGCCAAAGCCACTAAAGAACAg > 2:573437/1‑81 (MQ=255)
cTTTGCGGGTTCCCAGCCAGTCACTGAGGAAGCCACCTACGCAGCATCCCACCGCCGCGCCAAAGCCACTAAAGAACAGca < 1:573385/81‑1 (MQ=255)
tGCGGGTTCCCAGCCAGTCACTGAGGAAGCCACCTACGCAGCATCCCACCGCCGCGCCAAAGCCACTAAAGAACAGcac < 2:573385/79‑1 (MQ=255)
gCGGGTTCCCAGCCAGTCACTGAGGAAGCCACCTACGCAGCATCCCACCGCCGCGCCAAAGCCACTAAAGAACAGCACAtt > 1:573447/1‑81 (MQ=255)
cGGGTTCCCAGCCAGTCACTGAGGAAGCCACCTACGCAGCATCCCACCGCCGCGCCAAAGCCACTAAAGAACAGCACAtt < 2:573386/80‑1 (MQ=255)
cGGGTTCCCAGCCAGTCACTGAGGAAGCCACCTACGCAGCATCCCACCGCCGCGCCAAAGCCACTAAAGAACAGCACAtt < 2:573387/80‑1 (MQ=255)
gTTCCCAGCCAGTCACTGAGGAAGCCACCTACGCAGCATCCCACCGCCGCGCCAAAGCCACTAAAGAACAGCACATTGGCt < 2:573388/81‑1 (MQ=255)
cccAGCCAGTCACTGAGGAAGCCACCTACGCAGCATCCCACCGCCGCGCCAAAGCCACTAAAGAACAGCACATTGGCTa > 1:573450/1‑79 (MQ=255)
cccAGCCAGTCACTGAGGAAGCCACCTACGCAGCATCCCACCGCCGCGCCAAAGCCACTAAAGAACAGCACATTGGCTa > 1:573451/1‑79 (MQ=255)
cccAGCCAGTCACTGAGGAAGCCACCTACGCAGCATCCCACCGCCGCGCCAAAGCCACTAAAGAACAGCACATTGGCTAc < 1:573390/80‑1 (MQ=255)
ccagccagTCACTGAGGAAGCCACCTACGCAGCATCCCACCGCCGCGCCAAAGCCACTAAAGAACAGCACATTGGCTACAg < 2:573391/81‑1 (MQ=255)
ccagccagTCACTGAGGAAGCCACCTACGCAGCATCCCACCGCCGCGCCAAAGCCACTAAAGAACAGCACATTGGCTACAg < 1:573393/81‑1 (MQ=255)
ccagccagTCACTGAGGAAGCCACCTACGCAGCATCCCACCGCCGCGCCAAAGCCACTAAAGAACAGCACATTGGCTACAg < 1:573391/81‑1 (MQ=255)
gTCACTGAGGAAGCCACCTACGCAGCATCCCGCCGCCGCGCCAAAGCCACTAAAGAACAGCACATTGGCTACAGTATGCgg < 2:573393/81‑1 (MQ=255)
cACTGAGGAAGCCACCTACGCAGCATCCCACCGCCGCGCCAAAGCCACTAAAGAACAGCACATTGGCTACAGTATGCGGGt > 2:573438/1‑81 (MQ=255)
|
CGCAAATACCGGAATAATCAGCAGCTGCGAGGCCAGCAGGCTACAAACGTACGCTTTGCGGGTTCCCAGCCAGTCACCGAGGAAGCCACCTACGCAGCATCCCACCGCCGCGCCAAAGCCACTAAAGAACAGCACATTGGCTACAGTATGCGGGT > NC_000913/3371495‑3371649
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
