Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I2 R1
|
730 |
35.1 |
2107516 |
91.4% |
1926269 |
80.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,390,209 |
G→A |
L230L (CTG→CTA) |
aaeR → |
LysR‑type transcriptional regulator AaeR |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,390,209 | 0 | G | A | 100.0%
| 112.0
/ NA
| 32 | L230L (CTG→CTA) | aaeR | LysR‑type transcriptional regulator AaeR |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (17/15); total (17/15) |
CGGAAGGGATCTCGACTCGCCTGATCCCACAAGGAAGATTTGTGACTAATGATCCGATGACGCTGGTGCGCTGGCTGACGGCGGGTGCCGGGATCGCCTACGTGCCGCTGATGTGGGTGATCAACGAGATCAATCGTGGGGAGCTGGAGATCC > NC_000913/3390133‑3390285
|
cGGAAGGGATCTCGACTCGCCTGATCCCACAAGGAAGATTTGTGACTAATGATCCGATGACGCTGGTGCGCTGGCTAAcgg < 2:641666/81‑1 (MQ=255)
ggAAGGGATCTCGACTCGCCTGATCCCACAAGGAAGATTTGTGACTAATGATCCGATGACGCTGGTGCGCTGGCTAAcggc > 1:641714/1‑81 (MQ=255)
aaGGGATCTCGACTCGCCTGATCCCACAAGGAAGATTTGTGACTAATGATCCGATGACGCTGGTGCGCTGGCTAAcggcgg > 2:641704/1‑81 (MQ=255)
ggATCTCGACTCGCCTGATCCCACAAGGAAGATTTGTGACTAATGATCCGATGACGCTGGTGCGCTGGCTAACGGCGGGTg < 1:641667/81‑1 (MQ=255)
gACTCGCCTGATCCCACAAGGAAGATTTGTGACTAATGATCCGATGACGCTGGTGCGCTGGCTAACGGCGGGTGCCg < 1:641668/77‑1 (MQ=255)
gACTCGCCTGATCCCACAAGGAAGATTTGTGACTAATGATCCGATGACGCTGGTGCGCTGGCTAACGGCGGGTGCCGGGAt > 1:641709/1‑81 (MQ=255)
aCTCGCCTGATCCCACAAGGAAGATTTGTGACTAATGATCCGATGACGCTGGTGCGCTGGCTAACGGCGGGTGCCGGGATc < 1:641670/81‑1 (MQ=255)
aCTCGCCTGATCCCACAAGGAAGATTTGTGACTAATGATCCGATGACGCTGGTGCGCTGGCTAACGGCGGGTGCCGGGATc < 1:641669/81‑1 (MQ=255)
cTGATCCCACAAGGAAGATTTGTGACTAATGATCCGATGACGCTGGTGCGCTGGCTAACGGCGGGTGCCGGGATCGCCTAc > 2:641720/1‑81 (MQ=255)
aTCCCACAAGGAAGATTTGTGACTAATGATCCGATGACGCTGGTTCGCTGGCTAACGGCGGGTTCCGGGATCTCCTTCGtt > 2:641725/1‑80 (MQ=255)
aTCCCACAAGGAAGATTTGTGACTAATGATCCGATGACGCTGGTGCGCTGGCTAACGGCGGGTGCCGGGATCGCCTACGt < 2:641671/80‑1 (MQ=255)
ccACAAGGAAGATTTGTGACTAATGATCCGATGACGCTGGTGCGCTGGCTAACGGCGGGTGCCGGGATCGCCTACGTGcc < 1:641672/80‑1 (MQ=255)
caAGGAAGATTTGTGACTAATGATCCGATGACGCTGGTGCGCTGGCTAACGGCGGGTGCCGGGATCGCCTACGTGCCGCTg < 1:641673/81‑1 (MQ=255)
aGGAAGATTTGTGACTAATGATCCGATGACGCTGGTGCGCTGGCTAACGGCGGGTGCCGGGATCGCCTACGTGCCGCTGAt > 2:641718/1‑81 (MQ=255)
gAAGATTTGTGACTAATGATCCGATGACGCTGGTGCGCTGGCTAACGGCGGGTGCCGGGATCGCCTACGTGCCGCTGAtgt < 2:641674/81‑1 (MQ=255)
aaGATTTGTGACTAATGATCCGATGACGCTGGTGCGCTGGCTAACGGCGGGTGCCGGGATCGCCTACGTGCCGCCGAtgtg > 2:641715/1‑81 (MQ=255)
tgACTAATGATCCGATGACGCTGGTGCGCTGGCTAACGGCGGGTGCCGGGATCGCCTACGTGCCGCTGATGTGGGTGATc > 1:641716/1‑80 (MQ=255)
cTAATGATCCGATGACGCTGGTGCGCTGGCTAACGGCGGGTGCCGGGATCGCCTACGTGCCGCTGATGTGGGTGATCAACg < 1:641675/81‑1 (MQ=255)
aaTGATCCGATGACGCTGGTGCGCTGGCTAACGGCGGGTGCCGGGATCGCCTACGTGCCGCTGATGTGGGTGATCAAc > 1:641708/1‑78 (MQ=255)
aTGATCCGATGACGCTGGTGCGCTGGCTAACGGCGGGTGCCGGGATCGCCTACGTGCCGCTGATGTGGGTGATCAACga < 2:641676/79‑1 (MQ=255)
aTCCGATGACGCTGGTGCGCTGGCTAACGGCGGGTGCCGGGATCGCCTACGTGCCGCTGATGTGGGTGATCAACGAGATCa < 2:641677/81‑1 (MQ=255)
tCCGATGACGCTGGTGCGCTGGCTAACGGCGGGTGCCGGGATCGCCTACGTGCCGCTGATGTGGGTGATCAACGAGATCa > 2:641711/1‑80 (MQ=255)
ccGATGACGCTGGTGCGCTGGCTAACGGCGGGTGCCGGGATCGCCTACGTGCCGCTGATGTGGGTGATCAACGAGATCAAt < 2:641678/81‑1 (MQ=255)
ccGATGACGCTGGTGCGCTGGCTAACGGCGGGTGCCGGGATCGCCTACGTGCCGCTGATGTGGGTGATCAACGAGATCAAt > 1:641719/1‑81 (MQ=255)
cGATGACGCTGGTGCGCTGGCTAACGGCGGGTGCCGGGATCGCCTACGTGCCGCTGATGTGGGTGATCAACGAGATCAAt < 2:641679/80‑1 (MQ=255)
gATGACGCTGGTGCGCTGGCTAACGGCGGGTGCCGGGATCGCCTACGTGCCGCTGATGTGGGTGATCAACGAGATCAATCg > 1:641721/1‑81 (MQ=255)
aTGACGCTGGTGCGCTGGCTAACGGCGGGTGCCGGGAACGCCTACGTGCCGCGGAAGTGGGTGAGCAACGAGATCAAACGt > 1:641730/1‑81 (MQ=255)
gCTGGTGCGCTGGCTAACGGCGGGTGCCGGGATCGCCTACGTGCCGCTGATGTGGGTGATCAACGAGATCAATCGTggg > 2:641743/1‑79 (MQ=255)
tGGTGCGCTGGCTAACGGCGGGTGCCGGGATCGCCTACGTGCCGCCGATGTGGGTGATCAACGAGATCAATCGTGGGGAGc > 2:641722/1‑81 (MQ=255)
ggTGCGCTGGCTAACGGCGGGTGCCGGGATCGCCTACGTGCCGCTGATGTGGGTGATCAACGAGATCAATCGTGGGGAGCt > 2:641717/1‑81 (MQ=255)
tGCGCTGGCTAACGGCGGGTGCCGGGATCGCCTACGTGCCGCTGATGTGGGTGATCAACGAGATCAATCGTGGGGAGCTgg < 1:641680/81‑1 (MQ=255)
gcgcTGGCTAACGGCGGGTGCCGGGATCGCCTACGTGCCGCCGATGTGGGTGATCAACGAGATCAATCGTGGGGAGCTg > 2:641732/1‑79 (MQ=255)
gctggctaACGGCGGGTGCCGGGATCGCCTACGTGCCGCTGATGAGGGTGATCAACGAGATCAATCGTGGGGAGCTg > 1:641713/1‑77 (MQ=255)
ctggctaACGGCGGGTGCCGGGATCGCCTACGTGCCGCTGATGTGGGTGATCAACGAGATCAATCGTGGGGAGCTGGAGAt < 1:641681/81‑1 (MQ=255)
ggctaACGGCGGGTGCCGGGATCGCCTACGTGCCGCTGATGTGGGTGATCAACGAGATCAATCGTGGGGAGCTGGAGATcc > 1:641724/1‑81 (MQ=255)
gctaACGGCGGGTGCCGGGATCGCCTACGTGCCGCTGATGTGGGTGATCAACGAGATCAATCGTGGGGAGCTGGAGATcc < 1:641682/80‑1 (MQ=255)
|
CGGAAGGGATCTCGACTCGCCTGATCCCACAAGGAAGATTTGTGACTAATGATCCGATGACGCTGGTGCGCTGGCTGACGGCGGGTGCCGGGATCGCCTACGTGCCGCTGATGTGGGTGATCAACGAGATCAATCGTGGGGAGCTGGAGATCC > NC_000913/3390133‑3390285
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
