Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F1 I1 R1
|
182 |
31.9 |
1789978 |
98.5% |
1763128 |
80.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,907,282 |
A→G |
A220A (GCT→GCC) |
eno ← |
enolase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,907,282 | 0 | A | G | 100.0%
| 120.5
/ NA
| 34 | A220A (GCT→GCC) | eno | enolase |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (17/17); total (17/17) |
GTCCATCGCCAAAGTGATGTCTTTGCCCAGTTCATAACCAGCAGCTTTAACAGCTTCAGCGATAACAGCCAGAGCTTCAGCGTTGGAACCCAGGTTCGGCGCATAGCCACCTTCGTCACCAACAGCAGTGTTCATGCCTTTCGCTTTCAGAACT > NC_000913/2907204‑2907357
|
gTCCATCGCCAAAGTGATGTCTTTGCCCAGTTCATAACCAGCAGCTTTAACAGCTTCAGCGATAACAGCCAGAGCTTCGGc < 2:488584/81‑1 (MQ=255)
cATCGCCAAAGTGATGTCTTTGCCCAGTTCATAACCAGCAGCTTTAACAGCTTCAGCGATAACAGCCAGAGCTTCGGCGt < 1:488585/80‑1 (MQ=255)
aTCGCCAAAGTGATGTCTTTGCCCAGTTCATAACCAGCAGCTTTAACAGCTTCAGCGATAACAGCCAGAGCTTCGGCGTTg > 2:488627/1‑81 (MQ=255)
tCGCCAAAGTGATGTCTTTGCCCAGTTCATAACCAGCAGCTTTAACAGCTTCAGCGATAACAGCCAGAGCTTCGGCGTTg > 2:488645/1‑80 (MQ=255)
cAAAGTGATGTCTTTGCCCAGTTCATAACCAGCAGCTTTAACAGCTTCAGCGATAACAGCCAGAGCTTCGGCGTTGGAAcc > 1:488642/1‑81 (MQ=255)
aaaGTGATGTCTTTGCCCAGTTCATAACCAGCAGCTTTAACAGCTTCAGCGATAACAGCCAGAGCTTCGGCGTTGGAAcc > 2:488633/1‑80 (MQ=255)
aaaGTGATGTCTTTGCCCAGTTCATAACCAGCAGCTTTAACAGCTTCAGCGATAACAGCCAGAGCTTCGGCGTTGGAAcc > 1:488631/1‑80 (MQ=255)
aTGTCTTTGCCCAGTTCATAACCAGCAGCTTTAACAGCTTCAGCGATAACAGCCAGAGCTTCGGCGTTGGAACCCAGGTTc > 2:488639/1‑81 (MQ=255)
gTCTTTGCCCAGTTCATAACCAGCAGCTTTAACAGCTTCAGCGATAACAGCCAGAGCTTCGGCGTTGGAACCCAGGTTCgg > 2:488647/1‑81 (MQ=255)
gTCTTTGCCCAGTTCATAACCAGCAGCTTTAACAGCTTCAGCGATAACAGCCAGAGCTTCGGCGTTGGAACCCAGGTTCgg > 2:488632/1‑81 (MQ=255)
tCTTTGCCCAGTTCATAACCAGCAGCTTTAACAGCTTCAGCGATAACAGCCAGAGCTTCGGCGTTGGAACCCAGGTTCGgc < 2:488586/81‑1 (MQ=255)
ttGCCCAGTTCATAACCAGCAGCTTTAACAGCTTCAGCGATAACAGCCAGAGCTTCGGCGTTGGAACCCAGGTTCGGCGCa > 2:488625/1‑81 (MQ=255)
gCCCAGTTCATAACCAGCAGCTTTAACAGCTTCAGCGATAACAGCCAGAGCTTCGGCGTTGGAACCCAGGTTCGGCGCAt < 1:488587/80‑1 (MQ=255)
cAGTTCATAACCAGCAGCTTTAACAGCTTCAGCGATAACAGCCAGAGCTTCGGCGTTGGAACCCAGGTTCGGCGCATAGcc < 2:488588/81‑1 (MQ=255)
ttCATAACCAGCAGCTTTAACAGCTTCAGCGATAACAGCCAGAGCTTCGGCGTTGGAACCCAGGTTCGGCGCATAGCCAcc < 2:488589/81‑1 (MQ=255)
ttCATAACCAGCAGCTTTAACAGCTTCAGCGATAACAGCCAGAGCTTCGGCGTTGGAACCCAGGTTCGGCGCATAGCCAcc > 1:488654/1‑81 (MQ=255)
cATAACCAGCAGCTTTAACAGCTTCAGCGATAACAGCCAGAGCTTCGGCGTTGGAACCCAGGTTCGGCGCATAGCCACCt < 2:488590/80‑1 (MQ=255)
aTAACCAGCAGCTTTAACAGCTTCAGCGATAACAGCCAGAGCTTCGGCGTTGGAACCCAGGTTCGGCGCATAGCCACCtt < 1:488591/80‑1 (MQ=255)
gcagcTTTAACAGCTTCAGCGATAACAGCCAGAGCTTCGGCGTTGGAACCCAGGTTCGGCGCATAGCCACCTTCGTCACCa < 1:488592/81‑1 (MQ=255)
cAGCTTCAGCGATAACAGCCAGAGCTTCGGCGTTGGAACCCAGGTTCGGCGCATAGCCACCTTCGTCACCAACAGCAgtgt > 2:488637/1‑81 (MQ=255)
aGCTTCAGCGATAACAGCCAGAGCTTCGGCGTTGGAACCCAGGTTCGGCGCATAGCCACCTTCGTCACCAACAGCAGTGtt < 2:488593/81‑1 (MQ=255)
tCAGCGATAACAGCCAGAGCTTCGGCGTTGGAACCCAGGTTCGGCGCATAGCCACCTTCGTCACCAACAGCAGTGTTCATg > 1:488662/1‑81 (MQ=255)
cAGCGATAACAGCCAGAGCTTCGGCGTTGGAACCCAGGTTCGGCGCATAGCCACCTTCGTCACCAACAGCAGTGTTCAt < 1:488594/79‑1 (MQ=255)
cAGCGATAACAGCCAGAGCTTCGGCGTTGGAACCCAGGTTCGGCGCATAGCCACCTTCGTCACCAACAGCAGTGTTCATGc > 2:488648/1‑81 (MQ=255)
aGCGATAACAGCCAGAGCTTCGGCGTTGGAACCCAGGTTCGGCTCATAGCCACCTTCGTCACCAACAGCAGTGTTCATGcc > 2:488636/1‑81 (MQ=255)
gCGATAACAGCCAGAGCTTCGGCGTTGGAACCCAGGTTCGGCGCATAGCCACCTTCGTCACCAACAGCAGTGTTCATGCCt < 2:488595/81‑1 (MQ=255)
gATAACAGCCAGAGCTTCGGCGTTGGAACCCAGGTTCGGCGCATAGCCACCTTCGTCACCAACAGCAGTGTTCATGCCttt < 1:488596/81‑1 (MQ=255)
aaCAGCCAGAGCTTCGGCGTTGGAACCCAGGTTCGGCGCATAGCCACCTTCGTCACCAACAGCAGTGTTCATGCCTTTCGc > 2:488638/1‑81 (MQ=255)
cAGCCAGAGCTTCGGCGTTGGAACCCAGGTTCGGCGCATAGCCACCTTCGTCACCAACAGCAGTGTTCATGCCTTTCGCtt < 1:488597/81‑1 (MQ=255)
gCCAGAGCTTCGGCGTTGGAACCCAGGTTCGGCGCATAGCCACCTTCGTCACCAACAGCAGTGTTCATGCCTTTCGCttt > 1:488643/1‑80 (MQ=255)
ccAGAGCTTCGGCGTTGGAACCCAGGTTCGGCGCATAGCCACCTTCGTCACCAACAGCAGTGTTCATGCCTTTCGCttt > 1:488628/1‑79 (MQ=255)
cAGAGCTTCGGCGTTGGAACCCAGGTTCGGCGCATAGCCACCTTCGTCACCAACAGCAGTGTTCATGCCTTTCGCTTTCAg < 2:488598/81‑1 (MQ=255)
gagCTTCGGCGTTGGAACCCAGGTTCGGCGCATAGCCACCTTCGTCACCAACAGCAGTGTTCATGCCTTTCGCTTTCAGaa < 1:488599/81‑1 (MQ=255)
gCTTCGGCGTTGGAACCCAGGTTCGGCGCATAGCCACCTTCGTCACCAACAGCAGTGTTCATGCCTTTCGCTTTCAGAACt < 2:488600/81‑1 (MQ=255)
|
GTCCATCGCCAAAGTGATGTCTTTGCCCAGTTCATAACCAGCAGCTTTAACAGCTTCAGCGATAACAGCCAGAGCTTCAGCGTTGGAACCCAGGTTCGGCGCATAGCCACCTTCGTCACCAACAGCAGTGTTCATGCCTTTCGCTTTCAGAACT > NC_000913/2907204‑2907357
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
