mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 65,122 | A→C | I220S (ATC→AGC) | polB ← | DNA polymerase II |
| RA | 79,341 | C→A | G38V (GGT→GTT) | leuD ← | 3‑isopropylmalate dehydratase subunit LeuD |
| RA | 91,323 | G→A | E98K (GAA→AAA) | ftsL → | cell division protein FtsL |
| RA | 104,426 | C→T | L149F (CTT→TTT) | ftsA → | cell division protein FtsA |
| RA | 111,731 | T→C | E39G (GAA→GGA) | yacG ← | DNA gyrase inhibitor YacG |
| RA | 164,352 | C→T | L750L (CTG→TTG) | hrpB → | putative ATP‑dependent RNA helicase HrpB |
| RA | 167,915 | Δ1 bp | coding (432/2244 nt) | fhuA → | ferrichrome outer membrane transporter/phage receptor |
| RA | 181,536 | C→G | A218G (GCC→GGC) | degP → | periplasmic serine endoprotease DegP |
| RA | 191,485 | A→G | E210G (GAA→GGA) | tsf → | protein chain elongation factor EF‑Ts |
| RA | 208,192 | T→A | S1023T (TCC→ACC) | dnaE → | DNA polymerase III subunit alpha |
| MC JC | 257,908 | Δ776 bp | insB9–[crl] | insB9, insA9, [crl] | |
| RA | 268,409 | C→T | E184E (GAG→GAA) | ykfA ← | CP4‑6 prophage; putative GTP‑binding protein YkfA |
| RA | 294,225 | T→G | N192T (AAC→ACC) | yagM ← | CP4‑6 prophage; protein YagM |
| RA | 304,754 | C→T | R151Q (CGA→CAA) | ecpE ← | putative fimbrial chaperone EcpE |
| RA | 311,801 | G→A | intergenic (‑465/‑311) | ecpR ← / → ykgL | DNA‑binding transcriptional dual regulator MatA/uncharacterized protein YkgL |
| RA | 314,734 | Δ1 bp | pseudogene (378/888 nt) | eaeH → | putative porin domain‑containing protein EaeH |
| RA | 334,105 | T→G | H110P (CAC→CCC) | yahB ← | putative LysR‑type DNA‑binding transcriptional regulator YahB |
| RA | 341,434 | C→G | P104A (CCG→GCG) | yahJ → | putative deaminase with metallo‑dependent hydrolase domain |
| RA | 353,323 | C→G | S206R (AGC→AGG) | prpE → | propionyl‑CoA synthetase |
| RA | 396,645 | A→T | K3* (AAG→TAG) | sbmA → | peptide antibiotic/peptide nucleic acid transporter |
| RA | 399,509 | T→C | intergenic (‑176/‑84) | yaiY ← / → yaiZ | inner membrane protein/DUF2754 domain‑containing protein YaiZ |
| RA | 403,036 | T→C | D430D (GAT→GAC) | phoA → | alkaline phosphatase |
| RA | 432,294 | A→G | intergenic (‑281/+18) | tsx ← / ← yajI | nucleoside‑specific channel‑forming protein Tsx/putative lipoprotein YajI |
| RA | 449,803 | C→A | W280L (TGG→TTG) | cyoB ← | cytochrome bo3 ubiquinol oxidase subunit 1 |
| RA | 461,034 | T→G | I716S (ATC→AGC) | lon → | Lon protease |
| RA | 508,288 | A→G | D24G (GAT→GGT) | ybaQ → | putative DNA‑binding transcriptional regulator YbaQ |
| RA | 538,029 | A→G | I133V (ATT→GTT) | ybbW → | putative allantoin transporter |
| RA | 612,670 | A→G | intergenic (‑176/‑67) | fepA ← / → fes | ferric enterobactin outer membrane transporter/enterochelin esterase |
| RA | 656,725 | T→A | W57R (TGG→AGG) | pagP → | Lipid IVA palmitoyltransferase |
| RA | 698,541 | G→T | R213S (CGT→AGT) | asnB ← | asparagine synthetase B |
| RA | 797,736 | T→C | E232E (GAA→GAG) | ybhA ← | pyridoxal phosphate/fructose‑1,6‑bisphosphate phosphatase |
| RA | 814,742 | G→C | G406A (GGC→GCC) | uvrB → | excision nuclease subunit B |
| RA | 909,605 | A→T | L482Q (CTA→CAA) | poxB ← | pyruvate oxidase |
| RA | 913,852 | Δ1 bp | intergenic (‑38/+106) | hcp ← / ← lysO | protein S‑nitrosylase/L‑lysine exporter |
| RA | 914,159 | T→C | E233E (GAA→GAG) | lysO ← | L‑lysine exporter |
| RA | 919,229 | A→G | intergenic (‑109/‑6) | ybjX ← / → macA | DUF535 domain‑containing protein YbjX/ABC‑type tripartite efflux pump membrane fusion protein |
| RA | 922,079 | T→G | L578R (CTG→CGG) | macB → | ABC‑type tripartite efflux pump ATP binding/membrane subunit |
| RA | 932,340 | (A)8→7 | intergenic (‑290/‑255) | trxB ← / → lrp | thioredoxin reductase/DNA‑binding transcriptional dual regulator Lrp |
| RA | 996,703 | C→G | G81A (GGC→GCC) | ssuA ← | aliphatic sulfonate ABC transporter periplasmic binding protein |
| RA | 1,007,421 | T→C | S60S (TCA→TCG) | ycbX ← | 6‑N‑hydroxylaminopurine resistance protein |
| RA | 1,026,163 | A→C | I565L (ATC→CTC) | helD → | DNA helicase IV |
| RA | 1,042,554 | C→G | A553P (GCA→CCA) | etk ← | protein‑tyrosine kinase Etk |
| RA | 1,064,853 | A→T | D273V (GAT→GTT) | yccE → | uncharacterized protein YccE |
| RA | 1,096,234 | C→G | P131R (CCG→CGG) | ycdU → | uncharacterized protein YcdU |
| RA | 1,104,203 | A→G | T85A (ACA→GCA) | csgB → | curlin, minor subunit |
| RA | 1,143,915 | T→A | L151F (TTA→TTT) | rne ← | ribonuclease E |
| RA | 1,182,052 | C→G | A260P (GCG→CCG) | potD ← | spermidine preferential ABC transporter periplasmic binding protein |
| RA | 1,198,448 | G→A | intergenic (‑211/‑247) | ymfE ← / → lit | e14 prophage; uncharacterized protein YmfE/e14 prophage; cell death peptidase Lit |
| RA | 1,224,226 | (A)5→4 | intergenic (+319/+53) | ycgI → / ← minE | protein YcgI/Z‑ring positioning protein MinE |
| RA | 1,277,223 | G→C | A132A (GCC→GCG) | narX ← | sensory histidine kinase NarX |
| RA | 1,281,926 | T→A | L688Q (CTG→CAG) | narG → | nitrate reductase A subunit alpha |
| RA | 1,284,681 | T→C | S360P (TCT→CCT) | narH → | nitrate reductase A subunit beta |
| RA | 1,293,171 | G→A | intergenic (‑249/‑356) | hns ← / → tdk | DNA‑binding transcriptional dual regulator H‑NS/thymidine/deoxyuridine kinase |
| RA | 1,299,534 | T→C | F2L (TTT→CTT) | insH21 → | IS5 transposase and trans‑activator |
| RA | 1,307,693 | G→A | P318L (CCG→CTG) | clsA ← | cardiolipin synthase A |
| RA | 1,349,230 | T→G | K293T (AAA→ACA) | yciW ← | putative oxidoreductase |
| RA | 1,359,068 | T→C | V40V (GTA→GTG) | puuP ← | putrescine:H(+) symporter PuuP |
| RA | 1,428,030 | C→G | A233P (GCC→CCC) | insH‑5 ← | Rac prophage; IS5 transposase and trans‑activator |
| RA | 1,435,732 | (A)5→4 | intergenic (‑113/+28) | uspF ← / ← ompN | nucleotide binding filament protein/outer membrane porin N |
| RA | 1,442,102 | (T)5→4 | coding (742/990 nt) | ldhA ← | D‑lactate dehydrogenase |
| RA | 1,442,546 | A→C | Y100D (TAT→GAT) | ldhA ← | D‑lactate dehydrogenase |
| RA | 1,472,567 | C→G | pseudogene (2049/3495 nt) | ydbA → | putative outer membrane protein, N‑terminal fragment |
| RA | 1,490,954 | (T)5→4 | coding (53/531 nt) | cybB → | cytochrome b561 |
| RA | 1,497,760 | A→C | D302A (GAT→GCT) | opgD → | glucan biosynthesis protein D |
| RA | 1,506,320 | C→A | A50E (GCG→GAG) | sutR → | DNA‑binding transcriptional dual regulator SutR |
| RA | 1,512,246 | T→G | V198G (GTT→GGT) | ydcS → | putative ABC transporter periplasmic binding protein/polyhydroxybutyrate synthase |
| RA | 1,520,982 | A→G | I695T (ATT→ACT) | yncD ← | putative TonB‑dependent outer membrane receptor |
| RA | 1,562,457 | G→A | P9S (CCC→TCC) | ddpA ← | putative D,D‑dipeptide ABC transporter periplasmic binding protein |
| RA | 1,572,565 | T→C | T880A (ACT→GCT) | pqqL ← | putative zinc peptidase |
| RA | 1,575,336 | T→G | S762R (AGC→CGC) | yddB ← | putative TonB‑dependent receptor |
| RA | 1,578,871 | A→G | F158L (TTC→CTC) | yddA ← | ABC transporter family protein YddA |
| RA | 1,598,270 | A→T | intergenic (‑184/+347) | yneO ← / ← lsrK | AIDA‑I family autotransporter YneO/autoinducer‑2 kinase |
| RA | 1,607,828 | C→T | G161G (GGC→GGT) | tam → | trans‑aconitate 2‑methyltransferase |
| RA | 1,609,077 | C→T | intergenic (‑55/+152) | yneE ← / ← uxaB | conserved inner membrane protein YneE/tagaturonate reductase |
| RA | 1,610,589 | A→G | V31A (GTT→GCT) | uxaB ← | tagaturonate reductase |
| RA | 1,650,406 | C→T | pseudogene (329/921 nt) | ydfE → | Qin prophage; protein YdfE |
| RA | 1,658,706 | G→C | G213A (GGC→GCC) | ynfE → | putative selenate reductase YnfE |
| RA | 1,680,663 | C→T | P369P (CCC→CCT) | ydgI → | putative arginine:ornithine antiporter |
| RA | 1,693,155 | Δ1 bp | coding (1109/1374 nt) | uidB ← | glucuronide:H(+) symporter |
| RA | 1,706,464 | A→T | K39N (AAA→AAT) | rsxB → | SoxR [2Fe‑2S] reducing system protein RsxB |
| RA | 1,750,974 | T→A | T14S (ACA→TCA) | ydhX ← | putative 4Fe‑4S ferredoxin‑type protein |
| RA | 1,774,321 | T→C | V178A (GTC→GCC) | ydiB → | shikimate dehydrogenase/quinate dehydrogenase |
| RA | 1,779,461 | G→C | intergenic (‑160/‑156) | ydiP ← / → ydiQ | putative DNA‑binding transcriptional regulator YdiP/putative electron transfer flavoprotein subunit YdiQ |
| RA | 1,796,866 | T→C | Y360C (TAT→TGT) | pheT ← | phenylalanine‑‑tRNA ligase subunit beta |
| RA | 1,799,179 | Δ1 bp | intergenic (‑237/+47) | pheS ← / ← pheM | phenylalanine‑‑tRNA ligase subunit alpha/pheST‑ihfA operon leader peptide |
| RA | 1,830,943 | T→C | Y347C (TAC→TGC) | astC ← | succinylornithine transaminase |
| RA | 1,832,618 | G→C | G64A (GGC→GCC) | xthA → | exodeoxyribonuclease III |
| RA | 1,899,060 | A→C | N212H (AAT→CAT) | pdeD → | putative c‑di‑GMP phosphodiesterase PdeD |
| RA | 1,915,177 | (T)6→5 | coding (358/699 nt) | proQ ← | RNA chaperone ProQ |
| RA | 1,928,777 | A→G | D21D (GAT→GAC) | ptrB ← | oligopeptidase B |
| RA | 1,932,077 | T→G | intergenic (+18/+38) | purT → / ← eda | phosphoribosylglycinamide formyltransferase 2/KHG/KDPG aldolase |
| RA | 1,967,269 | C→A | D57Y (GAC→TAC) | cheY ← | chemotaxis protein CheY |
| RA | 1,977,712 | T→C | K45E (AAA→GAA) | flhC ← | DNA‑binding transcriptional dual regulator FlhC |
| RA | 1,988,032 | T→C | intergenic (‑73/‑190) | azuC ← / → yecR | uncharacterized protein AzuC/lipoprotein YecR |
| RA | 1,990,885 | T→A | V402E (GTG→GAG) | tyrP → | tyrosine:H(+) symporter |
| RA | 1,995,681 | T→C | Y9Y (TAT→TAC) | yecU → | protein YecU |
| RA | 1,995,748 | C→G | L32V (CTT→GTT) | yecU → | protein YecU |
| RA | 2,014,078 | G→A | D284N (GAT→AAT) | fliF → | flagellar basal‑body MS‑ring and collar protein |
| RA | 2,015,409 | A→G | E177G (GAA→GGA) | fliG → | flagellar motor switch protein FliG |
| RA | 2,044,771 | Δ1 bp | intergenic (+147/‑167) | asnT → / → yeeJ | tRNA‑Asn/inverse autotransporter adhesin |
| RA | 2,062,025 | T→C | intergenic (‑92/‑235) | nac ← / → asnV | DNA‑binding transcriptional dual regulator Nac/tRNA‑Asn |
| RA | 2,075,218 | C→A | A147E (GCG→GAG) | yeeR → | CP4‑44 prophage; inner membrane protein YeeR |
| RA | 2,107,517 | A→T | D271E (GAT→GAA) | glf ← | UDP‑galactopyranose mutase |
| RA | 2,113,482 | T→C | K282K (AAA→AAG) | galF ← | UTP:glucose‑1‑phosphate uridylyltransferase, low activity |
| RA | 2,140,712 | C→A | E301* (GAA→TAA) | asmA ← | putative assembly protein AsmA |
| RA | 2,150,632 | Δ1 bp | coding (354/1947 nt) | yegI ← | protein kinase YegI |
| RA | 2,183,270 | C→A | A128S (GCG→TCG) | yegX ← | putative hydrolase |
| RA | 2,221,701 | T→C | M97V (ATG→GTG) | bglX ← | beta‑D‑glucoside glucohydrolase, periplasmic |
| RA | 2,249,633 | T→C | intergenic (‑15/‑84) | yeiE ← / → yeiH | putative LysR‑type transcriptional regulator YeiE/conserved inner membrane protein YeiH |
| RA | 2,259,134 | T→A | N55Y (AAC→TAC) | psuK ← | putative pseudouridine kinase |
| RA | 2,260,779 | T→C | K211R (AAA→AGA) | fruA ← | fructose‑specific PTS multiphosphoryl transfer protein FruA |
| RA | 2,275,772 | A→G | Y167C (TAT→TGT) | yejE → | putative oligopeptide ABC transporter membrane subunit YejE |
| RA | 2,451,016 | A→G | D20D (GAT→GAC) | yfcQ ← | putative fimbrial protein YfcQ |
| RA | 2,513,154 | T→C | V38A (GTT→GCT) | nupC → | nucleoside:H(+) symporter NupC |
| RA | 2,517,367 | (A)5→4 | coding (466/2190 nt) | pdeA ← | putative c‑di‑GMP phosphodiesterase PdeA |
| RA | 2,660,768 | G→C | A255G (GCC→GGC) | iscS ← | cysteine desulfurase |
| RA | 2,692,082 | C→G | W1154C (TGG→TGC) | purL ← | phosphoribosylformylglycinamide synthetase |
| RA | 2,693,373 | G→C | A724G (GCC→GGC) | purL ← | phosphoribosylformylglycinamide synthetase |
| RA | 2,716,500 | A→G | intergenic (‑51/‑254) | grcA ← / → ung | stress‑induced alternate pyruvate formate‑lyase subunit/uracil‑DNA glycosylase |
| RA | 2,717,817 | C→T | A238T (GCG→ACG) | yfiF ← | putative methyltransferase |
| JC JC | 2,737,118 | IS1 (+) +8 bp | intergenic (+235/‑29) | bamD → / → raiA | outer membrane protein assembly factor BamD/stationary phase translation inhibitor and ribosome stability factor |
| RA | 2,783,901 | C→T | V177I (GTT→ATT) | ypjB ← | DUF5508 domain‑containing protein YpjB |
| RA | 2,810,778 | T→C | S3S (AGT→AGC) | mprA → | DNA‑binding transcriptional repressor MprA |
| RA | 2,887,571 | Δ1 bp | intergenic (+163/+7) | sokX → / ← cysH | small RNA SokX/phosphoadenosine phosphosulfate reductase |
| RA | 2,889,110 | T→C | K330K (AAA→AAG) | cysI ← | sulfite reductase, hemoprotein subunit |
| RA | 2,907,282 | A→G | A220A (GCT→GCC) | eno ← | enolase |
| RA | 2,994,461 | (T)8→7 | pseudogene (443/444 nt) | ygeK ← | putative DNA‑binding transcriptional regulator YgeK |
| RA | 2,995,368 | T→G | pseudogene (653/707 nt) | ygeN ← | putative type III secretion system protein |
| RA | 3,173,177 | T→A | P12P (CCT→CCA) | ygiN → | putative quinol monooxygenase YgiN |
| RA | 3,184,175 | T→C | T98A (ACC→GCC) | ribB ← | 3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase |
| RA | 3,184,476 | (A)7→8 | intergenic (‑10/‑364) | ribB ← / → ubiK | 3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase/ubiquinone biosynthesis accessory factor UbiK |
| RA | 3,189,625 | C→A | pseudogene (2194/2434 nt) | yqiG → | putative outer membrane usher protein YqiG |
| RA | 3,190,185 | T→C | L102P (CTT→CCT) | yqiH → | putative fimbrial chaperone YqiH |
| RA | 3,206,410 | T→A | intergenic (‑154/‑53) | ttdR ← / → ttdA | DNA‑binding transcriptional activator Dan/L(+)‑tartrate dehydratase subunit alpha |
| RA | 3,216,290 | G→C | P68A (CCA→GCA) | nfeF ← | NADPH‑dependent ferric chelate reductase |
| RA | 3,243,047 | A→T | Y90N (TAT→AAT) | uxaA ← | D‑altronate dehydratase |
| RA | 3,267,297 | A→C | intergenic (‑232/‑83) | tdcA ← / → tdcR | DNA‑binding transcriptional activator TdcA/DNA‑binding transcriptional activator TdcR |
| RA | 3,300,767 | T→G | V170V (GTA→GTC) | yhbT ← | SCP2 domain‑containing protein YhbT |
| RA | 3,308,605 | G→T | T107K (ACG→AAG) | nlpI ← | lipoprotein NlpI |
| RA | 3,362,820 | C→T | T5M (ACG→ATG) | yhcD → | putative fimbrial usher protein YhcD |
| RA | 3,418,650 | A→G | intergenic (+39/‑392) | yhdV → / → yhdW | lipoprotein YhdV/putative ABC transporter periplasmic binding protein YhdW |
| RA | 3,433,348 | G→A | N71N (AAC→AAT) | smf ← | protein Smf |
| RA | 3,447,858 | G→T | R98S (CGT→AGT) | rplN ← | 50S ribosomal subunit protein L14 |
| RA | 3,471,700 | A→T | F605L (TTT→TTA) | fusA ← | elongation factor G |
| RA | 3,571,253 | A→C | F23V (TTC→GTC) | glgX ← | limit dextrin alpha‑1,6‑glucohydrolase |
| RA | 3,651,128 | (T)7→8 | intergenic (+466/‑163) | arsC → / → yhiS | arsenate reductase/putative uncharacterized protein YhiS |
| RA | 3,667,617 | (A)6→5 | intergenic (‑37/+174) | gadA ← / ← ccp | glutamate decarboxylase A/cytochrome c peroxidase |
| RA | 3,765,827 | Δ1 bp | coding (3645/4134 nt) | rhsA → | rhs element protein RhsA |
| RA | 3,795,757 | G→C | A277P (GCG→CCG) | waaF → | ADP‑heptose‑‑LPS heptosyltransferase 2 |
| RA | 3,797,159 | (A)6→5 | coding (212/1260 nt) | waaL → | O‑antigen ligase |
| RA | 3,839,590 | G→A | A135V (GCG→GTG) | nlpA ← | lipoprotein‑28 |
| RA | 3,852,657 | T→C | Y43C (TAC→TGC) | ilvB ← | acetohydroxy acid synthase I subunit IlvB |
| RA | 3,863,817 | A→T | intergenic (‑214/‑82) | glvC ← / → yidP | putative PTS enzyme II component GlvC/putative DNA‑binding transcriptional regulator YidP |
| RA | 3,913,188 | T→G | I161L (ATC→CTC) | glmS ← | L‑glutamine‑‑D‑fructose‑6‑phosphate aminotransferase |
| RA | 3,917,491 | T→A | K259* (AAA→TAA) | atpG ← | ATP synthase F1 complex subunit gamma |
| RA | 3,937,676 | A→T | Q128L (CAA→CTA) | rbsK → | ribokinase |
| RA | 3,941,643 | T→G | intergenic (‑316/‑165) | yieP ← / → rrsC | putative transcriptional regulator YieP/16S ribosomal RNA |
| RA | 3,941,650 | A→G | intergenic (‑323/‑158) | yieP ← / → rrsC | putative transcriptional regulator YieP/16S ribosomal RNA |
| RA | 3,949,783 | (T)7→6 | coding (187/1521 nt) | yifB ← | putative magnesium chelatase YifB |
| RA | 3,988,602 | G→T | V155V (GTC→GTA) | hemX ← | PF04375 family protein HemX |
| RA | 4,007,952 | A→G | K66E (AAA→GAA) | rhtC → | L‑threonine exporter |
| RA | 4,033,611 | G→T | G156V (GGT→GTT) | trkH → | K(+) transporter TrkH |
| RA | 4,098,551 | A→G | G272G (GGA→GGG) | rhaS → | DNA‑binding transcriptional activator RhaS |
| RA | 4,104,284 | G→T | A231E (GCG→GAG) | cpxA ← | sensory histidine kinase CpxA |
| RA | 4,109,886 | T→C | intergenic (+63/‑44) | sbp → / → cdh | sulfate/thiosulfate ABC transporter periplasmic binding protein Sbp/CDP‑diacylglycerol diphosphatase |
| RA | 4,118,141 | Δ1 bp | intergenic (‑51/‑374) | glpF ← / → zapB | glycerol facilitator/cell division factor ZapB |
| RA | 4,175,484 | G→T | noncoding (13/85 nt) | tyrU → | tRNA‑Tyr |
| RA | 4,175,853 | (T)6→5 | intergenic (+24/‑91) | thrT → / → tufB | tRNA‑Thr/translation elongation factor Tu 2 |
| RA | 4,184,579 | T→G | I1112S (ATC→AGC) | rpoB → | RNA polymerase subunit beta |
| RA | 4,235,966 | Δ1 bp | coding (61/243 nt) | yjbE → | uncharacterized protein YjbE |
| RA | 4,244,695 | Δ1 bp | coding (381/1545 nt) | malF ← | maltose ABC transporter membrane subunit MalF |
| RA | 4,282,453 | T→C | N208S (AAT→AGT) | yjcF ← | pentapeptide repeat‑containing protein YjcF |
| RA | 4,299,439 | T→C | intergenic (‑73/+125) | fdhF ← / ← mdtP | formate dehydrogenase H/putative multidrug efflux pump outer membrane channel |
| RA | 4,313,118 | C→T | intergenic (‑127/‑232) | alsR ← / → rpiB | DNA‑binding transcriptional repressor AlsR/allose‑6‑phosphate isomerase/ribose‑5‑phosphate isomerase B |
| RA | 4,371,109 | G→A | V29I (GTT→ATT) | groL → | chaperonin GroEL |
| RA | 4,389,355 | T→A | T6S (ACT→TCT) | mscM ← | miniconductance mechanosensitive channel MscM |
| RA | 4,471,278 | T→A | D57V (GAT→GTT) | pyrI ← | aspartate carbamoyltransferase, PyrI subunit |
| RA | 4,503,704 | A→G | intergenic (‑273/‑354) | insG ← / → yjhB | KpLE2 phage‑like element; IS4 putative transposase/putative sialic acid transporter |
| RA | 4,546,846 | (A)5→4 | coding (1751/2637 nt) | fimD → | type I fimbriae usher protein |
| RA | 4,549,087 | G→T | G94W (GGG→TGG) | fimH → | type 1 fimbriae D‑mannose specific adhesin |
| RA | 4,584,768 | A→C | V665G (GTT→GGT) | hsdR ← | type I restriction enzyme EcoKI endonuclease component |
| RA | 4,638,175 | A→G | intergenic (+55/‑3) | creC → / → creD | sensory histidine kinase CreC/putative inner membrane protein |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 236071 | 236784 | 714 | 3 [0] | [2] 3 | dnaQ | DNA polymerase III subunit epsilon |
| * | * | ÷ | NC_000913 | 1530067 | 1530148 | 82 | 3 [2] | [2] 3 | ydcD | uncharacterized protein YdcD |
| * | * | ÷ | NC_000913 | 2033870 | 2033914 | 45 | 3 [2] | [2] 3 | rseX/yedS | small regulatory RNA RseX/putative outer membrane protein YedS, N‑terminal fragment |
| * | * | ÷ | NC_000913 | 3423730–3424234 | 3424574–3424238 | 5–845 | 3 [2] | [2] 3 | [rrfD]–[rrlD] | [rrfD],[rrlD] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1207790 = | 3 (0.100) | 17 (0.710) | 17/128 | 0.4 | 84.2% | coding (290/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | 1209619 = | 4 (0.170) | pseudogene (37/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
| * | ? | NC_000913 | = 1207805 | 3 (0.100) | 13 (0.540) | 13/128 | 0.7 | 80.3% | coding (305/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | = 1209602 | 4 (0.170) | pseudogene (54/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||