mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 70 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 2,743,700 | 0 | T | . | 74.3% | 58.4 / 43.6 | 35 | coding (76/483 nt) | yfiB | lipoprotein YfiB |
| * | NC_000913 | 1,163,417 | 0 | A | T | 74.2% | 58.2 / 18.0 | 31 | D53V (GAT→GTT) | thiK | thiamine kinase |
| * | NC_000913 | 3,476,217 | 0 | C | A | 73.3% | 45.4 / 23.8 | 30 | G75V (GGT→GTT) | yheO | putative DNA‑binding transcriptional regulator YheO |
| * | NC_000913 | 933,585 | 0 | C | A | 72.7% | 47.8 / 26.5 | 33 | A121E (GCG→GAG) | ftsK | cell division DNA translocase FtsK |
| * | NC_000913 | 1,825,113 | 0 | G | T | 72.7% | 28.1 / 17.0 | 22 | intergenic (‑176/+27) | ves/spy | HutD family protein Ves/ATP‑independent periplasmic chaperone |
| * | NC_000913 | 1,312,206 | 0 | A | . | 72.4% | 40.6 / 38.7 | 29 | coding (41/399 nt) | yciA | acyl‑CoA thioesterase |
| * | NC_000913 | 1,253,781 | 0 | A | G | 72.2% | 22.9 / 10.0 | 18 | G724G (GGT→GGC) | ycgV | putative autotransporter adhesin YcgV |
| * | NC_000913 | 1,195,945 | 0 | A | C | 71.0% | 55.5 / 24.4 | 31 | I275L (ATC→CTC) | icd | isocitrate dehydrogenase |
| * | NC_000913 | 781,010 | 0 | C | . | 70.6% | 37.5 / 57.6 | 34 | intergenic (+92/‑58) | lysW/valZ | tRNA‑Lys/tRNA‑Val |
| * | NC_000913 | 272,357 | 0 | G | T | 69.2% | 28.3 / 24.7 | 26 | intergenic (+167/‑223) | insN/eyeA | CP4‑6 prophage; IS911A regulator fragment/CP4‑6 prophage; small RNA EyeA |
| * | NC_000913 | 2,037,586 | 1 | . | T | 68.8% | 39.0 / 13.3 | 16 | coding (567/1359 nt) | hprS | sensory histidine kinase HprS |
| * | NC_000913 | 3,341,504 | 0 | T | C | 67.7% | 34.4 / 27.1 | 31 | F80S (TTC→TCC) | kdsD | D‑arabinose 5‑phosphate isomerase KdsD |
| * | NC_000913 | 28,902 | 0 | G | A | 66.7% | 47.2 / 33.6 | 39 | A177T (GCG→ACG) | dapB | 4‑hydroxy‑tetrahydrodipicolinate reductase |
| * | NC_000913 | 1,250,830 | 0 | T | . | 66.7% | 14.0 / 33.6 | 21 | coding (9/1071 nt) | dhaK | dihydroxyacetone kinase subunit K |
| * | NC_000913 | 1,376,140 | 0 | T | G | 66.7% | 35.6 / 19.1 | 24 | L36R (CTG→CGG) | ycjR | putative ketohexose‑3‑epimerase YcjR |
| * | NC_000913 | 1,807,668 | 0 | A | . | 66.7% | 8.7 / 22.1 | 15 | coding (269/291 nt) | ydiZ | protein YdiZ |
| * | NC_000913 | 2,250,252 | 0 | T | C | 66.7% | 28.5 / 25.0 | 30 | F179S (TTC→TCC) | yeiH | conserved inner membrane protein YeiH |
| * | NC_000913 | 2,327,042 | 0 | G | T | 66.7% | 29.5 / 32.2 | 30 | D312Y (GAT→TAT) | atoB | acetyl‑CoA acetyltransferase |
| * | NC_000913 | 4,281,720 | 0 | T | C | 66.7% | 24.1 / 19.0 | 24 | intergenic (+91/+63) | yjcE/yjcF | putative transporter YjcE/pentapeptide repeat‑containing protein YjcF |
| * | NC_000913 | 1,832,908 | 0 | A | G | 65.4% | 19.4 / 24.5 | 26 | I161V (ATC→GTC) | xthA | exodeoxyribonuclease III |