Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A2 F1 I1 R1
|
182 |
31.9 |
1789978 |
98.5% |
1763128 |
80.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
3,418,650 |
A→G |
intergenic (+39/‑392) |
yhdV → / → yhdW |
lipoprotein YhdV/putative ABC transporter periplasmic binding protein YhdW |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 3,418,650 | 0 | A | G | 100.0%
| 80.2
/ NA
| 23 | intergenic (+39/‑392) | yhdV/yhdW | lipoprotein YhdV/putative ABC transporter periplasmic binding protein YhdW |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (10/13); total (10/13) |
GATGGGGATCATCGCTCTATCGAAATAACTGAACAGGGCGCGGAGTTCCGCGCTCTTTTTAACGATACAGTATCTCTCCATAAGATAAAATATTGCTATATTCTGCTGGGTAATTCCCTGCTGATTTAGCATGTTACATCGCGT > NC_000913/3418584‑3418727
|
gATGGGGATCATCGCTCTATCGAAATAACTGAACAGGGCGCGGAGTTCCGCGCTCTTTTTAACGATGCAGTATCTCTCCAt < 2:597508/81‑1 (MQ=255)
aTGGGGATCATCGCTCTATCGAAATAACTGAACAGGGCGCGGAGTTCCGCGCTCTTTTTAACGATGCAGTATCTCTCCATa < 1:597509/81‑1 (MQ=255)
gggATCATCGCTCTATCGAAATAACTGAACAGGGCGCGGAGTTCCGCGCTCTTTTTAACGATGCAGTATCTCTCCATAAGa < 1:597510/81‑1 (MQ=255)
tcGCTCTATCGAAATAACTGAACAGGGCGCGGAGTTCCGCGCTCTTTTTAACGATGCAGTATCTCTCCATAAGATAAAata < 1:597511/81‑1 (MQ=255)
ctctATCGAAATAACTGAACAGGGCGCGGAGTTCCGCGCTCTTTTTAACGATGCAGTATCTCTCCATAAGATAAAATATTg < 2:597512/81‑1 (MQ=255)
tCGAAATAACTGAACAGGGCGCGGAGTTCCGCGCTCTTTTTAACGATGCAGTATCTCTCCATAAGATAAAATATTGCtat < 2:597514/80‑1 (MQ=255)
tCGAAATAACTGAACAGGGCGCGGAGTTCCGCGCTCTTTTTAACGATGCAGTATCTCTCCATAAGATAAAATATTGCt < 2:597513/78‑1 (MQ=255)
cGAAATAACTGAACAGGGCGCGGAGTTCCGCGCTCTTTTTAACGATGCAGTATCTCTCCATAAGATAAAATATTGCTatat > 1:597552/1‑81 (MQ=255)
cTGAACAGGGCGCGGAGTTCCGCGCTCTTTTTAACGATGCAGTATCTCTCCATAAGATAAAATATTGCTATATTCTGCTgg > 2:597550/1‑81 (MQ=255)
gAACAGGGCGCGGAGTTCCGCGCTCTTTTTAACGATGCAGTATCTCTCCATAAGATAAAATATTGCTATATTCTGCTggg > 2:597553/1‑80 (MQ=255)
aaCAGGGCGCGGAGTTCCGCGCTCTTTTTAACGATGCAGTATCTCTCCATAAGATAAAATATTGCTATATTCTGCTGGGTa < 2:597515/81‑1 (MQ=255)
gcgcGGAGTTCCGCGCTCTTTTTAACGATGCAGTATCTCTCCATAAGATAAAATATTGCTATATTCTGCTGGGTAATTccc < 2:597516/81‑1 (MQ=255)
gcgGAGTTCCGCGCTCTTTTTAACGATGCAGTATCTCTCCATAAGATAAAATATTGCTATATTCTGCTGGGTAATTCCctg > 1:597547/1‑81 (MQ=255)
ttCCGCGCTCTTTTTAACGATGCAGTATCTCTCCATAAGATAAAATATTGCTATATTCTGCTGGGTAATTCCCTGCTGAtt > 2:597542/1‑81 (MQ=255)
cgcTCTTTTTAACGATGCAGTATCTCTCCATAAGATAAAATATTGCTATATTCTGCTGGGTAATTCCCTGCTGATTTAGCa > 2:597544/1‑81 (MQ=255)
gcTCTTTTTAACGATGCAGTATCTCTCCATAAGATAAAATATTGCTATATTCTGCTGGGTAATTCCCTGCTGATTTAGCAt > 2:597545/1‑81 (MQ=255)
gcTCTTTTTAACGATGCAGTATCTCTCCATAAGATAAAATATTGCTATATTCTGCTGGGTAATTCCCTGCTGATTTAGCAt > 1:597546/1‑81 (MQ=255)
ctTTTTAACGATGCAGTATCTCTCCATAAGATAAAATATTGCTATATTCTGCTGGGTAATTCCCTGCTGATTTAGCATGt > 2:597551/1‑80 (MQ=255)
tttAACGATGCAGTATCTCTCCATAAGATAAAATATTGCTATATTCTGCTGGGTAATTCCCTGCTGATTTAGCATGTTa < 2:597517/79‑1 (MQ=255)
ttAACGATGCAGTATCTCTCCATAAGATAAAATATTGCTATATTCTGCTGGGTAATTCCCTGCTGATTTAGCATGTTACAt > 2:597540/1‑81 (MQ=255)
aCGATGCAGTATCTCTCCATAAGATAAAATATTGCTATATTCTGCTGGGTAATTCCCTGCTGATTTAGCATGTTACATcgc < 2:597518/81‑1 (MQ=255)
aCGATGCAGTATCTCTCCATAAGATAAAATATTGCTATATTCTGCTGGGTAATTCCCTGCTGATTTAGCATGTTACATcg < 1:597519/80‑1 (MQ=255)
gATGCAGTATCTCTCCATAAGATAAAATATTGCTATATTCTGCTGGGTAATTCCCTGCTGATTTAGCATGTTACATCGCGt < 2:597520/81‑1 (MQ=255)
|
GATGGGGATCATCGCTCTATCGAAATAACTGAACAGGGCGCGGAGTTCCGCGCTCTTTTTAACGATACAGTATCTCTCCATAAGATAAAATATTGCTATATTCTGCTGGGTAATTCCCTGCTGATTTAGCATGTTACATCGCGT > NC_000913/3418584‑3418727
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
