Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A1 F1 I1 R1
|
690 |
31.8 |
1836723 |
97.1% |
1783458 |
80.6 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
2,865,111 |
T→C |
I4T (ATT→ACT) |
ygbN → |
putative transporter YgbN |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 2,865,111 | 0 | T | C | 100.0%
| 123.0
/ NA
| 36 | I4T (ATT→ACT) | ygbN | putative transporter YgbN |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (26/10); total (26/10) |
GTACCCATACATCCCCCCATCTACGGATGGGGTAGGTTAACTATAACTTTCAGACAGGGTTTCCCATGTCCACAATTACATTGTTATGCATTGCGTTAGCTGGCGTAATCATGCTGTTGCTGCTGGTCATCAAGGCAAAGGTACAACCATTCG > NC_000913/2865036‑2865188
|
gTACCCATACATCCCCCCATCTACGGATGGGGTAGGTTAACTATAACTTTCAGACAGGGTTTCCCATGTCCACAACTACAt > 2:464779/1‑81 (MQ=255)
tACCCATACATCCCCCCATCTACGGATGGGGTAGGTTAACTATAACTTTCAGACAGGGTTTCCCATGTCCACAACTACAtt > 2:464782/1‑81 (MQ=255)
tACCCATACATCCCCCCATCTACGGATGGGGTAGGTTAACTATAACTTTCAGACAGGGTTTCCCATGTCCACAACTACAtt < 1:464754/81‑1 (MQ=255)
cccATACATCCCCCCATCTACGGATGGGGTAGGTTAACTATAACTTTCAGACAGGGTTTCCCATGTCCACAACTACATTGt < 2:464755/81‑1 (MQ=255)
cATACATCCCCCCATCTACGGATGGGGTAGGTTAACTATAACTTTCAGACAGGGTTTCCCATGTCCACAACTACATTGTTa > 1:464784/1‑81 (MQ=255)
aCATCCCCCCATCTACGGATGGGGTAGGTTAACTATAACTTTCAGACAGGGTTTCCCATGTCCACAACTACATTGTTATg > 1:464798/1‑80 (MQ=255)
cATCCCCCCATCTACGGATGGGGTAGGTTAACTATAACTTTCAGACAGGGTTTCCCATGTCCACAACTACATTGTTATGc < 1:464756/80‑1 (MQ=255)
aTCCCCCCATCTACGGATGGGGTAGGTTAACTATAACTTTCAGACAGGGTTTCCCATGTCCACAACTACATTGTTATGCAt > 2:464787/1‑81 (MQ=255)
ccccccATCTACGGATGGGGTAGGTTAACTATAACTTTCAGACAGGGTTTCCCATGTCCACAACTACATTGTTATGCATTg > 2:464792/1‑81 (MQ=255)
cccccATCTACGGATGGGGTAGGTTAACTATAACTTTCAGACAGGGTTTCCCATGTCCACAACTACATTGTTATGCATTGc > 2:464806/1‑81 (MQ=255)
ccccATCTACGGATGGGGTAGGTTAACTATAACTTTCAGACAGGGTTTCCCATGTCCACAACTACATTGTTATGCATTGCg > 1:464802/1‑81 (MQ=255)
aTCTACGGATGGGGTAGGTTAACTATAACTTTCAGACAGGGTTTCCCATGTCCACAACTACATTGTTATGCATTGCGTTAg > 1:464812/1‑81 (MQ=255)
tACGGATGGGGTAGGTTAACTATAACTTTCAGACAGGGTTTCCCATGTCCACAACTACATTGTTATGCATTGCGTTAGCTg > 2:464790/1‑81 (MQ=255)
aCGGATGGGGTAGGTTAACTATAACTTTCAGACAGGGTTTCCCATGTCCTCAACTACATTGTTATGCATTGCGTTAGCTgg > 2:464799/1‑81 (MQ=255)
cGGATGGGGTAGGTTAACTATAACTTTCAGACAGGGTTTCCCATGTCCACAACTACATTGTTATGCATTGCGTTAGCTGGc < 1:464757/81‑1 (MQ=255)
gggTAGGTTAACTATAACTTTCAGACAGGGTTTCCCATGTCCACAACTACATTGTTATGCATTGCGTTAGCTGGCGTAAt > 1:464788/1‑80 (MQ=255)
ggTAGGTTAACTATAACTTTCAGACAGGGTTTCCCATGTCCACAACTACATTGTTATGCATTGCGTTAGCTGGCGTAATCa > 2:464796/1‑81 (MQ=255)
gTTAACTATAACTTTCAGACAGGGTTTCCCATGTCCACAACTACATTGTTATGCATTGCGTTAGCTGGCGTAATCATGCTg > 1:464789/1‑81 (MQ=255)
ttAACTATAACTTTCAGACAGGGTTTCCCATGTCCACAACTACATTGTTATGCATTGCGTTAGCTGGCGTAATCATGCTGt > 1:464810/1‑81 (MQ=255)
aaCTATAACTTTCAGACAGGGTTTCCCATGTCCACAACTACATTGTTATGCATTGCGTTAGCTGGCGTAATCATGCTGTtg > 2:464795/1‑81 (MQ=255)
tataACTTTCAGACAGGGTTTCCCATGTCCACAACTACATTGTTATGCATTGCGTTAGCTGGCGTAATCATGCTGTtgctg > 2:464807/1‑81 (MQ=255)
aaCTTTCAGACAGGGTTTCCCATGTCCACAACTACATTGTTATGCATTGCGTTAGCTGGCGTAATCATGCTGTTGctgctg > 1:464805/1‑81 (MQ=255)
aCTTTCAGACAGGGTTTCCCATGTCCACAACTACATTGTTATGCATTGCGTTAGCTGGCGTAATCATGCTGTTGCTGCTgg < 2:464758/81‑1 (MQ=255)
aCTTTCAGACAGGGTTTCCCATGTCCACAACTACATTGTTATGCATTGCGTTAGCTGGCGTAATCATGCTGTTGCTGCTgg > 2:464794/1‑81 (MQ=255)
cTTTCAGACAGGGTTTCCCATGTCCACAACTACATTGTTATGCATTGCGTTAGCTGGCGTAATCATGCTGTTGCTGCTGGt > 1:464801/1‑81 (MQ=255)
tttCAGACAGGGTTTCCCATGTCCACAACTACATTGTTATGCATTGCGTTAGCTGGCGTAATCATGCTGTTGCTGCTGGt > 1:464800/1‑80 (MQ=255)
tCAGACAGGGTTTCCCATGTCCACAACTACATTGTTATGCATTGCGTTAGCTGGCGTAATCATGCTGTTGCTGCTGGtcat > 2:464793/1‑81 (MQ=255)
aGACAGGGTTTCCCATGTCCACAACTACATTGTTATGCATTGCGTTAGCTGGCGTAATCATGCTGTTGCTGCTGGtcatc < 1:464759/80‑1 (MQ=255)
aCAGGGTTTCCCATGTCCACAACTACATTGTTATGCATTGCGTTAGCTGGCGTAATCATGCTGTTGCTGCTGGTCATCAAg < 1:464760/81‑1 (MQ=255)
tttCCCATGTCCACAACTACATTGTTATGCATTGCGTTAGCTGGCGTAATCATGCTGTTGCTGCTGGTCATCAAGGCAAAg > 2:464797/1‑81 (MQ=255)
tttACCAAGTCCACAACTACATAGTTATGCATTGCGTTAGCTGGCGTAATCATGCTGTTGCTGCTGGTCATCAAGGCAAAg < 1:464761/81‑1 (MQ=255)
ccATGTCCACAACTACATTGTTATGCATTGCGTTAGCTGGCGTAATCATGCTGTTGCTGCTGGTCATCAAGGCAAAGGTAc < 1:464762/81‑1 (MQ=255)
cacaACTACGTTGTTATGCATTGCGTTAGCTGGCGTAATCATGCTGTTGCTGCTGGTCATCAAGGCAAAGGTACAACCAtt > 2:464809/1‑81 (MQ=255)
acaACTACATTGTTATGCATTGCGTTAGCTGGCGTAATCATGCTGTTGCTGCTGGTCATCAAGGCAAAGGTACAACCATTc > 1:464803/1‑81 (MQ=255)
acaACTACATTGTTATGCATTGCGTTAGCTGGCGTAATCATGCTCTTGCTGCTGGTCATCAAGGCAAAGGTACAACCATTc > 1:464763/1‑81 (MQ=255)
caACTACATTGTTATGCATTGCGTTAGCTGGCGTAATCATGCTGTTGCTGCTGGTCATCAAGGCAAAGGTACAACCATTCg < 2:464764/81‑1 (MQ=255)
|
GTACCCATACATCCCCCCATCTACGGATGGGGTAGGTTAACTATAACTTTCAGACAGGGTTTCCCATGTCCACAATTACATTGTTATGCATTGCGTTAGCTGGCGTAATCATGCTGTTGCTGCTGGTCATCAAGGCAAAGGTACAACCATTCG > NC_000913/2865036‑2865188
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
