Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A4 F28 I1 R1 162 93.0 3098984 99.0% 3067994 139.9

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 1,996,183 T→C N217S (AAC→AGC)  sdiA ← DNA‑binding transcriptional dual regulator SdiA

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,996,1830TC100.0% 251.4 / NA 67N217S (AAC→AGC) sdiADNA‑binding transcriptional dual regulator SdiA
Reads supporting (aligned to +/- strand):  ref base T (0/0);  new base C (32/35);  total (32/35)

AACCGGCTGATAGCGTGCCTTTCAGCCGGTTTTTGCATCTGGCACGCAGGACAGAAAAGAGATCAAATTAAGCCAGTAGCGGCCGCGTAACAGGCAACCTGGGTCTTATTTGGTGCATT‑AATTTTTTTCTGCATGTTTTTCTGGTGGAAATTGACCGTATTCTCAGAGATTGACAAAATCATCGCTATCTCTGCTGATGTTTTCCCTTCCGCCGTCCACCTCAGAATTTCTTTTTCGCGCTTGCTGAAATTCATCTCTGGCGTCATCACTA  >  NC_000913/1996048‑1996318
                                                                                                                                        |                                                                                                                                       
aaCCGGCTGATAGCGTGCCTTTCAGCCGGTTTTTGCATCTGGCACGCAGGACAGAAAAGAGATCAAATTAAGCCAGTAGCGGCCGCGTAACAGGCAACCTGGGTCTTATTTGGTGCATT‑AATTTTTTTCTGCATGctttt                                                                                                                                     >  2:281689/1‑140 (MQ=255)
aaCCGGCTGATAGCGTGCCTTTCAGCCGGTTTTTGCATCTGGCACGCAGGACAGAAAAGAGATCAAATTAAGCCAGTAGCGGCCGCGTAACAGGCAACCTGGGTCTTATTTGGTGCATT‑AATTTTTTTCTGCATGctttt                                                                                                                                     >  2:896629/1‑140 (MQ=255)
  ccGGCTGATAGCGTGCCTTTCAGCCGGTTTTTGCATCTGGCACGCAGGACAGAAAAGAGATCAAATTAAGCCAGTAGCGGCCGCGTAACAGGCAACCTGGGTCTTATTTGGTGCATT‑AATTTTTTTCTGCATGCTTTTCt                                                                                                                                   >  2:75361/1‑140 (MQ=255)
  ccGGCTGATAGCGTGCATTTCAGCCGGTTTTTGCATCTGGCACGCAGGACAGAAAAGAGATCAAATTAAGCCAGTAGCGGCCGCGTAACAGGCAACCTGGGTCTTATTTGGTGCATT‑AATTTTTTTCTGCATGCTTTTCt                                                                                                                                   >  1:1541405/1‑140 (MQ=255)
   cGGCTGATAGCGTGCCTTTCAGCCGGTTTTTGCATCTGGCACGCAGGACAGAAAAGAGATCAAATTAAGCCAGTAGCGGCCGCGTAACAGGCAACCTGGGTCTTATTTGGTGCATT‑AATTTTTTTCTGCATGCTTTTCtg                                                                                                                                  >  2:517811/1‑140 (MQ=255)
    ggCTGATAGCGTGCCTTTCAGCCGGTTTTTGCATCTGGCACGCAGGACAGAAAAGAGATCAAATTAAGCCAGTAGCGGCCGCGTAACAGGCAACCTGGGTCTTATTTGGTGCATT‑AATTTTTTTCTGCATGCTTTTCtgg                                                                                                                                 <  2:622373/140‑1 (MQ=255)
    ggCTGATAGCGTGCCTTTCAGCCGGTTTTTGCATCTGGCACGCAGGACAGAAAAGAGATCAAATTAAGCCAGTAGCGGCCGCGTAACAGGCAACCTGGGTCTTATTTGGTGCATT‑AATTTTTTTCTGCATGCTTTTCtgg                                                                                                                                 <  1:184035/140‑1 (MQ=255)
     gCTGATAGCGTGCCTTTCAGCCGGTTTTTGCATCTGGCACGCAGGACAGAAAAGAGATCAAATTAAGCCAGTAGCGGCCGCGTAACAGGCAACCTGGGTCTTATTTGGTGCATT‑AATTTTTTTCTGCATGCTTTTCtggt                                                                                                                                >  1:917755/1‑140 (MQ=255)
             cGTGCCTTTCAGCCGGTTTTTGCATCTGGCACGCAGGACAGAAAAGAGATCAAATTAAGCCAGTAGCGGCCGCGTAACAGGCAACCTGGGACTTATTTGGTGCATT‑AATTTTTTTCTGCATGCTTTTCTGGTGGAAATTg                                                                                                                        >  2:1478477/1‑140 (MQ=255)
              gTGCCTTTCAGCCGGTTTTTGCATCTGGCACGCAGGACAGAAAAGAGATCAAATTAAGCCAGTAGCGGCCGCGTAACAGGCAACCTGGGTCTTATTTGGTGCATT‑AATTTTTTTCTGCATGCTTTTCTGGTGGAAATTGa                                                                                                                       <  1:1128924/140‑1 (MQ=255)
              gTGCCTTTCAGCCGGTTTTTGCATCTGGCACGCAGGACAGAAAAGAGATCAAATTAAGCCAGTAGCGGCCGCGTAACAGGCAACCTGGGTCTTATTTGGTGCATT‑AATTTTTTTCTGCATGCTTTTCTGGTGGAAATTGa                                                                                                                       >  1:890496/1‑140 (MQ=255)
               tGCCTTTCAGCCGGTTTTTGCATCTGGCACGCAGGACAGAAAAGAGATCAAATTAAGCCAGTAGCGGCCGCGTAACAGGCAACCTGGGTCTTATTTGGTGCATT‑AATTTTTTTCTGCATGCTTTTCTGGTGGAAATTGAc                                                                                                                      <  2:846982/140‑1 (MQ=255)
               tGCCTTTCAGCCGGTTTTTGCATCTGGCACGCAGGACAGAAAAGAGATCAAATTAAGCCAGTAGCGGCCGCGTAACAGGCAACCTGGGTCTTATTTGGTGCATT‑AATTTTTTTCTGCATGCTTTTCTGGTGGAAATTGAc                                                                                                                      <  2:1035079/140‑1 (MQ=255)
               tGCCTTTCAGCCGGTTTTTGCATCTGGCACGCAGGACAGAAAAGAGATCAAATTAAGCCAGTAGCGGCCGCGTAACAGGCAACCTGGGTCTTATTTGGTGCATT‑AATTTTTTTCTGCATGCTTTTCTGGTGGAAATTGAc                                                                                                                      <  2:1486376/140‑1 (MQ=255)
               tGCCTTTCAGCCGGTTTTTGCATCTGGCACGCAGGACAGAAAAGAGATCAAATTAAGCCAGTAGCGGCCGCGTAACAGGCAACCTGGGTCTTATTTGGTGCATT‑AATTTTTTTCTGCATGCTTTTCTGGTGGAAATTGAc                                                                                                                      >  1:278707/1‑140 (MQ=255)
               tGCCTTTCAGCCGGTTTTTGCATCTGGCACGCAGGACAGAAAAGAGATCAAATTAAGCCAGTAGCGGCCGCGTAACAGGCAACCTGGGTCTTATTTGGTGCATT‑AATTTTTTTCTGCATGCTTTTCTGGTGGAAATTGAc                                                                                                                      >  2:1126713/1‑140 (MQ=255)
                gCCTTTCAGCCGGTTTTTGCATCTGGCACGCAGGACAGAAAAGAGATCAAATTAAGCCAGTAGCGGCCGCGTAACAGGCAACCTGGGTCTTATTTGGTGCATT‑AATTTTTTTCTGCATGCTTTTCTGGTGGAAATTGAcc                                                                                                                     <  1:601631/140‑1 (MQ=255)
                gCCTTTCAGCCGGTTTTTGCATCTGGCACGCAGGACAGAAAAGAGATCAAATTAAGCCAGTAGCGGCCGCGTAACAGGCAACCTGGGTCTTATTTGGTGCATT‑AATTTTTTTCTGCATGCTTTTCTGGTGGAAATTGAcc                                                                                                                     <  2:1384764/140‑1 (MQ=255)
                gCCTTTCAGCCGGTTTTTGCATCTGGCACGCAGGACAGAAAAGAGATCAAATTAAGCCAGTAGCGGCCGCGTAACAGGCAACCTGGGTCTTATTTGGTGCATT‑AATTTTTTTCTGCATGCTTTTCTGGTGGAAATTGAcc                                                                                                                     <  2:1533506/140‑1 (MQ=255)
                  cTTTCAGCCGGTTTTTGCATCTGGCACGCAGGACAGAAAAGAGATCAAATTAAGCCAGTAGCGGCCGCGTAACAGGCAACCTGGGTCTTATTTGGTGCATT‑AATTTTTTTCTGCATGCTTTTCTGGTGGAAATTGACCGt                                                                                                                   <  2:1132342/140‑1 (MQ=255)
                   tttCAGCCGGTTTTTGCATCTGGCACGCAGGACAGAAAAGAGATCAAATTAAGCCAGTAGCGGCCGCGTAACAGGCAACCTGGGTCTTATTTGGTGCATT‑AATTTTTTTCTGCATGCTTTTCTGGTGGAAATTGACCGTa                                                                                                                  <  2:104169/140‑1 (MQ=255)
                   tttCAGCCGGTTTTTGCATCTGGCACGCAGGACAGAAAAGAGATCAAATTAAGCCAGTAGCGGCCGCGTAACAGGCAACCTGGGTCTTATTTGGTGCATT‑AATTTTTTTCTGCATGCTTTTCTGGTGGAAATTGACCGTa                                                                                                                  <  2:323590/140‑1 (MQ=255)
                   tttCAGCCGGTTTTTGCATCTGGCACGCAGGACAGAAAAGAGATCAAATTAAGCCAGTAGCGGCCGCGTAACAGGCAACCTGGGTCTTATTTGGTGCATT‑AATTTTTTTCTGCATGCTTTTCTGGTGGAAATTGACCGTa                                                                                                                  <  2:917755/140‑1 (MQ=255)
                   tttCAGCCGGTTTTTGCATCTGGCACGCAGGACAGAAAAGAGATCAAATTAAGCCAGTAGCGGCCGCGTAACAGGCAACCTGGGTCTTATTTGGTGCATT‑AATTTTTTTCTGCATGCTTTTCTGGTGGAAATTGACCGTa                                                                                                                  <  2:986355/140‑1 (MQ=255)
                       aGCCGGTTTTTGCATCTGGCACGCAGGACAGAAAAGAGATCAAATTAAGCCAGTAGCGGCCGCGTAACAGGCAACCTGGGTCTTATTTGGTGCATT‑AATTTTTTTCTGCATGCTTTTCTGGTGGAAATTGACCGTATtct                                                                                                              <  2:156113/140‑1 (MQ=255)
                         ccGGTTTTTGCATCTGGCACGCAGGACAGAAAAGAGATCAAATTAAGCCAGTAGCGGCCGCGTAACAGGCAACCTGGGTCTTATTTGGTGCATT‑AATTTTTTTCTGCATGCTTTTCTGGTGGAAATTGACCGTATTCTCa                                                                                                            <  1:983963/140‑1 (MQ=255)
                            gTTTTTGGATTTGTCACGCCTGACAGTATAGAGATTAAATTAAGCCAGGAGCATCCGCGTAACAGGCAACCTGGGTCTTATTTGGAGCATT‑AATTTTTTTCTGCATGCTTTTCTGGGGGATATTGACCGTATTCTCagag                                                                                                         >  2:794917/1‑140 (MQ=255)
                                 tGCATCTGGCACGCAGGACAGAAAAGAGATCAAATTAAGCCAGTAGCGGCCGCGTAACAGGCAACCTGGGTCTTATTTGGTGCATT‑AATTTTTTTCTGCATGCTTTTCTGGTGGAAATTGAcc                                                                                                                     <  1:731925/123‑1 (MQ=255)
                                 tGCATCTGGCACGCAGGACAGAAAAGAGATCAAATTAAGCCAGTAGCGGCCGCGTAACAGGCAACCTGGGTCTTATTTGGTGCATT‑AATTTTTTTCTGCATGCTTTTCTGGTGGAAATTGAcc                                                                                                                     >  2:731925/1‑123 (MQ=255)
                                       tGGCACGCAGGACAGAAAAGAGATCAAATTAAGCCAGTAGCGGCCGCGTAACAGGCAACCTGGGTCTTATTTGGTGCATT‑AATTTTTTTCTGCATGCTTTTCTGGTGGAAATTGACCGTATTCTCAGAGATTGACAAAat                                                                                              >  2:270659/1‑140 (MQ=255)
                                       tGGCACGCAGGACAGAAAAGAGATCAAATTAAGCCAGTAGCGGCCGCGTAACAGGCAACCTGGGTCTTATTTGGTGCATT‑AATTTTTTTCTGCATGCTTTTCTGGTGGAAATTGACCGTATTCTCAGAGATTGACAAAat                                                                                              >  2:544827/1‑140 (MQ=255)
                                        ggCACGCAGGACAGAAAAGAGATCAAATTAAGCCAGTAGCGGCCGCGTAACAGGCAACCTGGGTCTTATTTGGTGCATT‑AATTTTTTTCTGCATGCTTTTCTGGTGGAAATTGACCGTATTCTCAGAGATTGACAAAatc                                                                                             >  2:382489/1‑140 (MQ=255)
                                         gCACGCAGGACAGAAAAGAGATCAAATTAAGCCAGTAGCGGCCGCGTAACAGGCAACCTGGGTCTTATTTGGTGCATT‑AATTTTTTTCTGCATGCTTTTCTGGTGGAAATTGACCGTATTCTCAGAGATTGACAAAatca                                                                                            >  1:916302/1‑140 (MQ=255)
                                             gCAGGACAGAAAAGAGATCAAATTAAGCCAGTAGCGGCCGCGTAACAGGCAACCTGGGTCTTATTTGGTGCATT‑AATTTTTTTCTGCATGCTTTTCTGGTGGAAATTGACCGTATTCTCAGAGATTGACAAAATCATCGc                                                                                        <  1:1126713/140‑1 (MQ=255)
                                              cAGGACAGAAAAGAGATCAAATTAAGCCAGTAGCGGCCGCGTAACAGGCAACCTGGGTCTTATTTGGTGCATT‑AATTTTTTTCTGCATGCTTTTCTGGTGGAAATTGACCGTATTCTCAGAGATTGACAAAATCATCGCt                                                                                       <  1:1316870/140‑1 (MQ=255)
                                              cAGGACAGAAAAGAGATCAAATTAAGCCAGTAGCGGCCGCGTAACAGGCAACCTGGGTCTTATTTGGTGCATT‑AATTTTTTTCTGCATGCTTTTCTGGTGGAAATTGACCGTATTCTCAGAGATTGACAAAATCATCGCt                                                                                       >  2:1284543/1‑140 (MQ=255)
                                                   cAGAAAAGAGATCAAATTAAGCCAGTAGCGGCCGCGTAACAGGCAACCTGGGTCTTATTTGGTGCATT‑AATTTTTTTCTGCATGCTTTTCTGGTGGAAATTGACCGTATTCTCAGAGATTGACAAAATCATCGCTAtctc                                                                                  >  2:657033/1‑140 (MQ=255)
                                                      aaaaGAGATCAAATTAAGCCAGTAGCGGCCGCGTAACAGGCAACCTGGGTCTTATTTGGTGCATT‑AATTTTTTTCTGCATGCTTTTCTGGTGGAAATTGACCGTATTCTCAGAGATTGACAAAATCATCGCTATCTctgc                                                                               >  1:187731/1‑140 (MQ=255)
                                                      aaaaGAGATCAAATTAAGCCAGTAGCGGCCGCGTAACAGGCAACCTGGGTCTTATTTGGTGCATT‑AATTTTTTTCTGCATGCTTTTCTGGTGGAAATTGACCGTATTCTCAGAGATTGACAAAATCATCGCTATCTctgc                                                                               <  1:205147/140‑1 (MQ=255)
                                                           agaTCAAATTAAGCCAGTAGCGGCCGCGTAACAGGCAACCTGGGTCTTATTTGGTGCATT‑AATTTTTTTCTGCATGCTTTTCTGGTGGAAATTGACCGTATTCTCAGAGATTGACAAAATCATCGCTATCTCTGCTGATg                                                                          >  1:461094/1‑140 (MQ=255)
                                                             aTCAAATTAAGCCAGTAGCGGCCGCGTAACAGGCAACCTGGGTCTTATTTGGTGCATTAAATTTTTTTCTGCATGCTTTTCTGGTGGAAATTGACCGTATTCTCAGAGATTGACAAAATCATCGCTATCTCTGCTGATGt                                                                         >  2:909733/1‑140 (MQ=255)
                                                             aTCAAATTAAGCCAGTAGCGGCCGCGTAACAGGCAACCTGGGTCTTATTTGGTGCATT‑AATTTTTTTCTGCATGCTTTTCTGGTGGAAATTGACCGTATTCTCAGAGATTGACAAAATCATCGCTATTTCTGCTGATGtt                                                                        >  2:812275/1‑140 (MQ=255)
                                                             aTCAAATTAAGCCAGTAGCGGCCGCGTAACAGGCAACCTGGGTCTTATTTGGTGCATT‑AATTTTTTTCTGCATGCTTTTCTGGTGGAAATTGACCGTATTCTCAGAGATTGACAAAATCATCGCTATCTCTGCTGATGtt                                                                        >  1:1392915/1‑140 (MQ=255)
                                                              tCAAATTAAGCCAGTAGCGGCCGCGTAACAGGCAACCTGGGTCTTATTTGGTGCATT‑AATTTTTTTCTGCATGCTTTTCTGGTGGAAATTGACCGTATTCTCAGAGATTGACAAAATCATCGCTATCTCTGCTGATGttt                                                                       <  1:469662/140‑1 (MQ=255)
                                                                    tAAGCCAGTAGCGGCCGCGTAACAGGCAACCTGGGTCTTATTTGGTGCATT‑AATTTTTTTCTGCATGCTTTTCTGGTGGAAATTGACCGTATTCTCAGAGATTGACAAAATCATCGCTATCTCTGCTGATGTTTTCCCtt                                                                 <  2:1541405/140‑1 (MQ=255)
                                                                     aaGCCAGTAGCGGCCGCGTAACAGGCAACCTGGGTCTTATTTGGTGCATT‑AATTTTTTTCTGCATGCTTTTCTGGTGGAAATTGACCGTATTCTCAGAGATTGACAAAATCATCGCTATCTCTGCTGATGTTTTCCCTTc                                                                <  2:1028382/140‑1 (MQ=255)
                                                                       gCCAGTAGCGGCCGCGTAACAGGCAACCTGGGTCTTATTTGGTGCATT‑AATTTTTTTCTGCATGCTTTTCTGGTGGAAATTGACCGTATTCTCAGAGATTGACAAAATCATCGCTATCTCTGCTGATGTTTTCCCTTccg                                                              <  1:517811/140‑1 (MQ=255)
                                                                            tAGCGGCCGCGTAACAGGCAACCTGGGTCTTATTTGGTGCATT‑AATTTTTTTCTGCATGCTTTTCTGGTGGAAATTGACCGTATTCTCAGAGATTGACAAAATCATCGCTATCTCTGCTGATGTTTTCCCTTCCGCCGTc                                                         >  2:1239778/1‑140 (MQ=255)
                                                                               cGGCCGCGTAACAGGCAACCTGGGTCTTATTTGGTGCATT‑AATTTTTTTCTGCATGCTTTTCTGGTGGAAATTGACCGTATTCTCAGAGATTGACAAAATCATCGCTATCTCTGCTGATGTTTTCCCTTCCGCCGTCCAc                                                      <  2:1080271/140‑1 (MQ=255)
                                                                                     cgTAACAGGCAACCTGGGTCTTATTTGGTGCATT‑AATTTTTTTCTGCATGCTTTTCTGGTGGAAATTGACCGTATTCTCAGAGATTGACAAAATCATCGCTATCTCTGCTGATGTTTTCCCTTCCGCCGTCCACCTCAGa                                                >  2:561729/1‑140 (MQ=255)
                                                                                      gTAACAGGCAACCTGGGTCTTATTTGGTGCATT‑AATTTTTTTCTGCATGCTTTTCTGGTGGAAATTGACCGTATTCTCAGAGATTGACAAAATCATCGCTATCTCTGCTGATGTTTTCCCTTCCGCCGTCCACCTCAGaa                                               >  1:396851/1‑140 (MQ=255)
                                                                                         aCAGGCAACCTGGGTCTTATTTGGTGCATT‑AATTTTTTTCTGCATGCTTTTCTGGTGGAAATTGACCGTATTCTCAGAGATTGACAAAATCATCGCTATCTCTGCTGATGTTTTCCCTTCCGCCGTCCACCTCAGAAttt                                            <  1:896629/140‑1 (MQ=255)
                                                                                            ggCAACCTGGGTCTTATTTGGTGCATT‑AATTTTTTTCTGCATGCTTTTCTGGTGGAAATTGACCGTATTCTCAGAGATTGACAAAATCATCGCTATCTCTGCTGATGTTTTCCCTTCCGCCGTCCACCTCAGAATTTCtt                                         >  2:904541/1‑140 (MQ=255)
                                                                                                aCCTGGGTCTTATTTGGTGCATT‑AATTTTTTTCTGCATGCTTTTCTGGTGGAAATTGACCGTATTCTCAGAGATTGACAAAATCATCGCTATCTCTGCTGATGTTTTCCCTTCCGCCGTCCACCTCAGAATTTCTTTTTc                                     >  1:345449/1‑140 (MQ=255)
                                                                                                   tGGGTCTTATTTGGTGCATT‑AATTTTTTTCTGCATGCTTTTCTGGTGGAAATTGACCGTATTCTCAGAGATTGACAAAATCATCGCTATCTCTGCTGATGTTTTCCCTTCCGCCGTCCACCTCAGAATTTCTTTTTcgtg                                  <  1:1241614/140‑3 (MQ=255)
                                                                                                   tGGGTCTTATTTGGTGCATT‑AATTTTTTTCTGCATGCTTTTCTGGTGGAAATTGACCGTATTCTCAGAGATTGACAAAATCATCGCTATCTCTGCTGATGTTTTCCCTTCCGCCGTCCACCTCAGAATTTCTTTTTcgcg                                  <  2:11492/140‑1 (MQ=255)
                                                                                                     ggTCTTATTTGGTGCATT‑AATTTTTTTCTGCATGCTTTTCTGGTGGAAATTGACCGTATTCTCAGAGATTGACAAAATCATCGCTATCTCTGCTGATGTTTTCCCTTCCGCCGTCCACCTCAGAATTTCTTTTTCGCGCt                                <  1:561729/140‑1 (MQ=255)
                                                                                                           aTTTGGTGCATT‑AATTTTTTTCTGCATGCTTTTCTGGTGGAAATTGACCGTATTCTCAGAGATTGACAAAATCATCGCTATCTCTGCTGATGTTTTCCCTTCCGCCGTCCACCTCAGAATTTCTTTTTCGCGCTTGCTGa                          >  1:35856/1‑140 (MQ=255)
                                                                                                               ggTGCATT‑AATTTTTTTCTGCATGCTTTTCTGGTGGAAATTGACCGTATTCTCAGAGATTGACAAAATCATCGCTATCTCTGCTGATGTTTTCCCTTCCGCCGTCCACCTCAGAATTTCTTTTTCGCGCTTGCTGAAAtt                      >  2:833830/1‑140 (MQ=255)
                                                                                                               ggTGCATT‑AATTTTTTTCTGCATGCTTTTCTGGTGGAAATTGACCGTATTCTCAGAGATTGACAAAATCATCGCTATCTCTGCTGATGTTTTCCCTTCCGCCGTCCACCTCAGAATTTCTTTTTCGCGCTTGCTGAAAtt                      <  1:1478477/140‑1 (MQ=255)
                                                                                                                gTGCATT‑AATTTTTTTCTGCATGCTTTTCTGGTGGAAATTGACCGTATTCTCAGAGATTGACAAAATCATCGCTATCTCTGCTGATGTTTTCCCTTCCGCCGTCCACCTCAGAATTTCTTTTTCGCGCTTGCTGAAATTc                     <  2:278707/140‑1 (MQ=255)
                                                                                                                 tGCATT‑AATTTTTTTCTGCATGCTTTTCTGGTGGAAATTGACCGTATTCTCAGAGATTGACAAAATCATCGCTATCTCTGCTGATGTTTTCCCTTCCGCCGTCCACCTCAGAATTTCTTTTTCGCGCTTGCTGAAATTCa                    >  2:815277/1‑140 (MQ=255)
                                                                                                                     tt‑AATTTTTTTCTGCATGCTTTTCTGGTGGAAATTGACCGTATTCTCAGAGATTGACAAAATCATCGCTATCTCTGCTGATGTTTTCCCTTCCGCCGTCCACCTCAGAATTTCTTTTTCGCGCTTGCTGAAATTCAtctc                >  1:606745/1‑140 (MQ=255)
                                                                                                                      t‑AATTTTTTTCTGCATGCTTTTCTGGTGGAAATTGACCGTATTCTCAGAGATTGACAAAATCATCGCTATCTCTGCTGATGTTTTCCCTTCCGCCGTCCACCTCAGAATTTCTTTTTCGCGCTTGCTGAAATTCATctct               <  2:916302/140‑1 (MQ=255)
                                                                                                                           ttttttCTGCATGCTTTTCTGGTGGAAATTGACCGTATTCTCAGAGATTGACAAAATCATCGCTATCTCTGCTGATGTTTTCCCTTCCGCCGTCCACCTCAGAATTTCTTTTTCGCGCTTGCTGAAATTCATCTCTGGCg           <  1:1284543/140‑1 (MQ=255)
                                                                                                                               ttCTGCATGCTTTTCTGGTGGAAATTGACCGTATTCTCAGAGATTGACAAAATCATCGCTATCTCTGCTGATGTTTTCCCTTCCGCCGTCCACCTCAGAATTTCTTTTTCGCGCTTGCTGAAATTCATCTCTGGCGtcat       <  1:544827/140‑1 (MQ=255)
                                                                                                                                 cTGCATGCTTTTCTGGTGGAAATTGACCGTATTCTCAGAGATTGACAAAATCATCGCTATCTCTGCTGATGTTTTCCCTTCCGCCGTCCACCTCAGAATTTCTTTTTCGCGCTTGCTGAAATTCATCTCTGGCGtcatca     >  1:259976/1‑140 (MQ=255)
                                                                                                                                 cTGCATGCTTTTCTGGTGGAAATTGACCGTATTCTCAGAGATTGACAAAATCATCGCTATCTCTGCTGATGTTTTCCCTTCCGCCGTCCACCTCAGAATTTCTTTTTCGCGCTTGCTGAAATTCATCTCTGGCGtcatca     <  1:909733/140‑1 (MQ=255)
                                                                                                                                   gCATGCTTTTCTGGTGGAAATTGACCGTATTCTCAGAGATTGACAAAATCATCGCTATCTCTGCTGATGTTTTCCCTTCCGCCGTCCACCTCAGAATTTCTTTTTCGCGCTTGCTGAAATTCATCTCTGGCGTCATCACt   >  1:1344403/1‑140 (MQ=255)
                                                                                                                                    cATGCTTTTCTGGTGGAAATTGACCGTATTCTCAGAGATTGACAAAATCATCGCTATCTCTGCTGATGTTTTCCCTTCCGCCGTCCACCTCAGAATTTCTTTTTCGCGCTTGCTGAAATTCATCTCTGGCGTCATCACTa  >  1:201222/1‑140 (MQ=255)
                                                                                                                                        |                                                                                                                                       
AACCGGCTGATAGCGTGCCTTTCAGCCGGTTTTTGCATCTGGCACGCAGGACAGAAAAGAGATCAAATTAAGCCAGTAGCGGCCGCGTAACAGGCAACCTGGGTCTTATTTGGTGCATT‑AATTTTTTTCTGCATGTTTTTCTGGTGGAAATTGACCGTATTCTCAGAGATTGACAAAATCATCGCTATCTCTGCTGATGTTTTCCCTTCCGCCGTCCACCTCAGAATTTCTTTTTCGCGCTTGCTGAAATTCATCTCTGGCGTCATCACTA  >  NC_000913/1996048‑1996318

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 40 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A