Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A0 F0 I1 R1	111	280.4	7997852	99.2%	7933869	150.0

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	CP006881	2,801,996	G→A	A327T (GCC→ACC)	U712_14440 →	UPF0118 membrane protein ytvI

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP006881	2,801,996	0	G	A	99.7%	1233.6 / NA	363	A327T (GCC→ACC)	U712_14440	UPF0118 membrane protein ytvI
Reads supporting (aligned to +/- strand): ref base G (0/0); major base A (184/178); minor base C (0/1); total (184/179)
Fisher's exact test for biased strand distribution p-value = 4.93e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.83e-01

Only 100 of 369 total aligned reads displayed.

TGGATTTTGTATTTATCGATTACGGGCCAGCTGCCCCAAGCAATCGGAATTGGTATCCTGTACCTCGTCGTTCTTATTCAGCGGCAGCTGACAGAGCCCAAGATACTAAGTAAATCTATCGGGATCGATCCGCTGGCAACACTCATCGCCCTGTTTGCCGGCTTTAAATTATTCGGGTTTTTAGGACTGATTGCGGGACCGGCTGTACTCGTCATCATCCAAGCTTTCATCACAACAGGCGCATTAAAAGAAATATGGTCCTATATCACCGTTCAGCAAAAATAAAACGGCAGC  >  CP006881/2801849‑2802142

 ggATTTTGTATTTATCGATTACGGGCCAGCTGCCCCAAGCAATCGGAATTGATATCCTGTACCTCGTCGTTCTTATTCAGCGGCAGCTGACAGAGCCCAAGATACTAAGTAAATCTATCGGGATCGATCCGCTGGCAACACTCATCAccc                                                                                                                                                 <  1:1581618/150‑1 (MQ=255)

   aTTTTGTATTTATCGATTACGGGCCAGCTGCCCCAAGCAATCGGAATTGGTATCCTGTACCTCGTCGTTCTTATTCAGCGGCAGCTGACAGAGCCCAAGATACTAAGTAAATCTATCGGGATCGATCCGCTGGCAACACTCATCACCCTg                                                                                                                                               >  2:1123541/1‑150 (MQ=255)

      ttGTATTTATCGATTCCGGGCCAGCTGCCCCAAGCACTCGGAATTGGTATCCTGTACCTCGTCGTTCTTATTCAGCGGCAGCTGACAGAGCCCAAGATACTAAGTAAATCTATCGGGATCGATCCGCTGGCAACACTCATCACCCTGttt                                                                                                                                            <  1:3516737/150‑1 (MQ=255)

         tATTTATCGATTACGGGCCAGCTGCCCCAAGCAATCGGAATTGGTATCCTGTACCTCGTCGTTCTTATTCAGCGGCAGCTGACAGAGCCCAAGATACTAAGTAAATCTATCGGGATCGATCCGCTGGCAACACTCATCACCCTGTTTGcc                                                                                                                                         <  1:3060/150‑1 (MQ=255)

          aTTTATCGATTCCGGGCCAGCTGCCCCAAGCAATCGGAATTGGTATCCTGTACCTCGTCGTTCTTATTCAGCGGCAGCTGACAGAGCCCAAGATACTAAGTAAATCTATCGGGATCGATCCGCTGGCAACACTCATCACCCTGTTTGCCg                                                                                                                                        <  1:1556195/150‑1 (MQ=255)

          aTTTATCGATTACGGGCCAGCTGCCCCAAGCAATCGGAATTGGTATCCTGTACCTCGTCGTTCTTATTCAGCGGCAGCTGACAGAGCCCAAGATACTAAGTAAATCTATCGGGATCGATCCGCTGGCAACACTCATCACCCTGTTTGCCg                                                                                                                                        >  2:2286936/1‑150 (MQ=255)

           tttATCGATTACGGGCCAGCTGCCCCAAGCAATCGGAATTGGTATCCTGTACCTCGTCGTTCTTATTCAGCGGCAGCTGACAGAGCCCAAGATACTAAGTAAATCTATCGGGATCGATCCGCTGGCAACACTCATCACCCTGTTTGCCgg                                                                                                                                       <  2:1974603/150‑1 (MQ=255)

           tttATCGATTACGGGCCAGCTGCCCCAAGCAATCGGAATTGGTATCCTGTACCTCGTCGTTCTTATTCAGCGGCAGCTGACAGAGCCCAAGATACTAAGTAAATCTATCGGGATCGATCCGCTGGCAACACTCATCACCCTGTTTGCCgg                                                                                                                                       <  2:2501440/150‑1 (MQ=255)

            ttATCGATTACGGGCCAGCTGCCCCAAGCAATCGGAATTGGTATCCTGTACCTCGTCGTTCTTATTCAGCGGCAGCTGACAGAGCCCAAGATACTAAGTAAATCTATCGGGATCGATCCGCTGGCAACACCCATCACCCTGGTTGCCGGc                                                                                                                                      >  1:3330170/1‑150 (MQ=255)

               tCGATTACGGGCCAGCTGCCCCAAGCAATCGGAATTGGTATCCTGTACCTCGTCGTTCTTATTCAGCGGCAGCTGACAGAGCCCAAGATACTAAGTAAATCTATCGGGATCGATCCGCTGGCAACACTCATCACCCTGTTTGCCGGCttt                                                                                                                                   <  2:335715/150‑1 (MQ=255)

                    tACGGGCCAGCTGCCCCAAGCAATCGGAATTGGTATCCTGTACCTCGTCGTTCTTATTCAGCGGCAGCTGACAGAGCCCAAGATACTAAGTAAATCTATCGGGATCGATCCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAatt                                                                                                                              >  2:3585667/1‑150 (MQ=255)

                       gggCCAGCTGCCCCAAGCAATCGGAATTGGTATCCTGTACCTCGTCGTTCTTACTCAGCGGCAGCTGACAGAGCCCAAGATACTAAGTAAATCTATCGGGATCGATCCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAattatt                                                                                                                           <  1:2680491/150‑1 (MQ=255)

                        ggCCAGCTGCCCCAAGCAATCGGAATTGGTATCCTGTACCTCGTCGTTCTTATTCAGCGGCAGCTGACAGAGCCCAAGATACTAAGTAAATCTATCGGGATCGATCCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAATTATTc                                                                                                                          <  1:3699599/150‑1 (MQ=255)

                         gCCAGCTGCCCCAAGCAATCGGAATTGGTATCCTGTACCTCGTCGTTCTTATTCAGCGGCAGCTGACAGAGCCCAAGATACTAAGTAAATCTATCGGGATCGATCCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAATTATTCg                                                                                                                         <  2:129071/150‑1 (MQ=255)

                          ccAGCTGCCCCAAGCAATCGGAATTGGTATCCTGTACCTCGTCGTTCTTATTCAGCGGCAGCTGACAGAGCCCAAGATACTAAGTAAATCTATCGGGATCGATCCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAATTATTCgg                                                                                                                        >  1:915871/1‑150 (MQ=255)

                          ccAGCTGCCCCAAGCAATCGGAATTGGTATCCTGTACCTCGTCGTTCTTATTCAGCGGCAGCTGACAGAGCCCAAGATACTAAGTAAATCTATCGGGATCGATCCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAATTATTCgg                                                                                                                        <  2:3292814/150‑1 (MQ=255)

                          ccAGCTGCCCCAAGCAATCGGAATTGGTATCCTGTACCTCGTCGTTCTTATTCAGCGGCAGCTGACAGAGCCCAAGATACTAAGTAAATCTATCGGGATCGATCCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAATTATTCgg                                                                                                                        >  2:824422/1‑150 (MQ=255)

                           cAGCTGCCCCAAGCAATCGGAATTGGTATCCTGTACCTCGTCGTTCTTATTCAGCGGCAGCTGACAGAGCCCAAGATACTAAGTAAATCTATCGGGATCGATCCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAATTATTCggg                                                                                                                       <  2:1465338/150‑1 (MQ=255)

                           cAGCTGCCCCAAGCAATCGGAATTGGTATCCTGTACCTCGTCGTGCTTATTCAGCGGCAGCTGACAGAGCCCAAGATACTAAGTAAATCTATCGGGATCGGTCCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAGTTATTCggg                                                                                                                       >  1:149966/1‑150 (MQ=255)

                             gCTGCCCCAAGCAATCGGAATTGGTTTCCTGTACCTCGTCGTTCTTATTCAGCGGCAGCTGACAGAGCCCAAGATACTAAGTAAATCTATCGGGATCGATCCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAATTTTTCGGGtt                                                                                                                     >  1:3175965/1‑150 (MQ=255)

                             gCTGCCCCAAGCAATCGGAATTGGTATCCTGTACCTCGTCGTTCTTATTCAGCGGCAGCTGACAGAGCCCAAGATACTAAGTAAATCTATCGGGATCGATCCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAATTATTCGGGtt                                                                                                                     >  2:2034748/1‑150 (MQ=255)

                                gCCCCAAGCAATCGGAATTGGTATCCTGTACCTCGTCGTTCTTATTCAGCGGCAGCTGACAGAGCCCAAGATACTAAGTAAATCTATCGGGATCGATCCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAATTATTCGGGttttt                                                                                                                  >  2:3659161/1‑150 (MQ=255)

                                gCCCCAAGCAATCGGAATTGGTATCCTGTACCTCGTCGTTCTTATTCAGCGGCAGCTGACAGAGCCCAAGATACTAAGTAAATCTATCGGGATCGATCCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAATTATTCGGGttttt                                                                                                                  <  1:579088/150‑1 (MQ=255)

                                 ccccAAGCAATCGGAATTGGTATCCTGTACCTCGTCGTTCTTATTCAGCGGCAGCTGGCAGAGCCCAAGATACTAAGTAAATCTATCGGGATCGATCCCCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAGATTATTCGGGtttttt                                                                                                                 >  1:3497294/1‑149 (MQ=255)

                                     aaGCCATCGGAATGGGAAACCTGTACCTCGTCGTTCTTATTCAGCGGCAGCTGACAGAGCCCAAGATACTAAGTAAATCCATCGGGATCGATCCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAATTATTCGGGTTTTTAGGAc                                                                                                             <  1:3885624/150‑1 (MQ=255)

                                      aGCAATCGGAATTGGTATCCTGTACCTCGTCGTTCTTATTCAGCGGCAGCTGACAGAGCCCAAGATACTAAGTAAATCTATCGGGATCGATCCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAATTATTCGGGTTTTTAGGACt                                                                                                            >  2:3063934/1‑150 (MQ=255)

                                      aGCAATCGGAATTGGTATCCTGGACCTCGTCGTTCTTATTCAGCGGCAGCTGACAGAGCCCAAGATACTAAGGAAATCTATCGGGATCGATCCGCTGGCAACACTCATCACCCTGGTTGCCGGCTGTAAATTATTCGGGTGTTTAGGACt                                                                                                            >  2:2427659/1‑150 (MQ=255)

                                         aaTCGGAATTGGTATCCTGTACCTCGTCGTTCTTATTCAGCGGCAGCTGACAGAGCCCAAGATACTAAGTAAATCTATCGGGATCGATCCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAATTATTCGGGTTTTTAGGACTGAt                                                                                                         <  1:1355868/150‑1 (MQ=255)

                                           tCGGAATTGGTATCCTGTACCTCGTCGTTCTTATTCAGCGGCAGCTGACAGAGCCCAAGATACTTAGTAAATCTATCGGGATCGATCCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAATTATTCGGGTTTTTAGGACTGATTg                                                                                                       >  1:856876/1‑150 (MQ=255)

                                               aaTTGGTATCCTGTACCCCGTCGTTCTTATTCAGCGGCAGCTGACAGAGCCCAAGAGACTAAGTCAATCTAGCGGGATCGATCCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAATTATTCGGGTTTTTAGGACTGATTGCggg                                                                                                   <  1:3675089/150‑1 (MQ=255)

                                                aTTGGTATCCTGTACCTCGTCGTTCTTATTCAGCGGCAGCTGACAGAGCCCAAGATACTAAGTAAATCTATCGGGATCGATCCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAATTATTCGGGTTTTTAGGACTGATTGCGGGa                                                                                                  >  1:3947692/1‑150 (MQ=255)

                                                  tGGTATCCTGTACCTCGTCGTTCTTATTCAGCGGCAGCTGACAGAGCCCAAGATACTAAGTAAATCTATCGGGATCGATCCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAATTATTCGGGTTTTTAGGACTGATTGCGGGAcc                                                                                                <  2:3788549/150‑1 (MQ=255)

                                                    gTATCCTGTACCTCGTCGTTCTTATTCAGCGGCAGCTGACAGAGCCCAAGATACTAAGTAAATCTATCGGGATCGATCCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAACTATTCGGGTTTTTAGGACTGATTGCGGGACCgg                                                                                              >  2:3271878/1‑150 (MQ=255)

                                                     tATCCTGTACCTCGTCGTTCTTATTCAGCGGCAGCTGACAGAGCCCAAGATACTAAGTAAATCTATCGGGATCGATCCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAATTATTCGGGTTTTTAGGACTGATTGCGGGACCGGc                                                                                             <  1:526477/150‑1 (MQ=255)

                                                     tATCCTGTACCTCGTCGTTCTTATTCAGCGGCAGCTGACAGAGCCCAAGATACTAAGTAAATCTATCGGGATCGATCCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAATTATTCGGGTTTTTAGGACTGATTGCGGGACCGGc                                                                                             <  2:394150/150‑1 (MQ=255)

                                                      aTCCTGTACCTCGTCGTTCTTATCCAGGGGCAGCTGACAGAGCCCAAGATACTAAGTAAATCTATCGGGATCGATCCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAATTATTCGGGTTTTTAGGACTGATTGCGGGACCGGCt                                                                                            <  1:3911122/150‑1 (MQ=255)

                                                         cTGTACCTCGTCGTTCTTATTCAGCGGCAGCTGACAGAGCCCAAGATACTAAGTAAATCTATCGGGATCGATCCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAATTATTCGGGTTTTTAGGACTGATTGCGGGACCGGCTGTa                                                                                         >  1:2659538/1‑150 (MQ=255)

                                                                tcgtcgTTCTTATTCAGCGGCAGCTGACAGAGCCCAAGATACTAAGTAAATCTATCGGGATCGATCCGCTGGCAACACTCATCACCCTGGTTGCCGGCTTTAAATTATTCGGGTTTTTAGGACTGATTGCGGGACCGGCTGTACTCGtca                                                                                  >  2:2959731/1‑150 (MQ=255)

                                                                 cgtcgtTCTTATTCAGCGGCAGCTGACAGAGCCCAAGATACTAAGTAAATCTATCGGGATCGATCCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAATTATTCGGGTTTTTAGGACTGATTGCGGGACCGGCTGTACTCGtcat                                                                                 <  1:436819/150‑1 (MQ=255)

                                                                   tcgtTCTTATTCAGCGGCAGCTGACAGAGCCCAAGATACTAAGTAAATCTATCGGGATCGATCCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAATTATTCGGGTTTTTAGGACTGATTGCGGGACCGGCTGTACTCGtcatca                                                                               >  2:3136473/1‑150 (MQ=255)

                                                                        cTTATTCAGCGGCAGCTGACAGAGCCCAAGATACTAAGTAAATCTATCGGGATCGATCCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAGCTATTCGGGTTTTTAGGACTGGTTGCGGGGCCGGCTGTACTCGTCATCATCCaa                                                                          >  2:619704/1‑150 (MQ=255)

                                                                         ttATTCAGCGGCAGCTGACAGAGCCCAAGATACTAAGTAAATCTATCGGGATCGATCCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAATTATTCGGGTTTTTAGGACTGATTGCGGGACCGGCTGTACTCGTCATCATCCAAg                                                                         >  1:1631627/1‑150 (MQ=255)

                                                                          tatcgaGCGGCAGCTGACAGAGCCCAAGATTCTAAGTAAATCTATCGGGACCGTTCCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAATTATTCGGGTTTTTAGGACTGATTGCGGGACCGGCTGTACTCGTCATCATCCAAGc                                                                        <  2:2698634/145‑1 (MQ=255)

                                                                            ttCAGCGGCAGCTGACAGAGCCCAAGATACTAAGTAAATCTATCGGGATCGATCCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAATTATTCGGGTTTTTAGGACTGATTGCGGGACCGGCTGTACTCGCCATCATCCAAGCtt                                                                      >  1:1936967/1‑150 (MQ=255)

                                                                            ttCAGCGGCAGCTGACAGAGCCCAAGATACTAAGTAAATCTATCGGGATCGATCCGCCGGCAACACTCCTCACCCTGTTTGCCGGCTCTAAATTATTCGGGTTTTTAGGACTGATTGCGGGGCCGGCGGTGCTCGTCATCATCCAAGCtt                                                                      >  1:2040544/1‑150 (MQ=255)

                                                                             tCAGCGGCAGCTGACAGAGCCCAAGATACTAAGTAAATCTATCGGGATCGATCCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAATTATTCGGGTTTTTAGGACTGATTGCGGGACCGGCTGGACTCGTCATCATCCAAGCtgt                                                                     >  2:2791095/1‑148 (MQ=255)

                                                                              cAGCGGCAGCTGACAGAGCCCAAGATACTAAGTAAATCTATCGGGATCGATCCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAATTATTCGGGTTTTTAGGACTGATTGCGGGACCGGCTGTACTCGTCATCATCCAAGCTTtc                                                                    >  1:1436916/1‑150 (MQ=255)

                                                                              cAGCGGCAGCTGACAGAGCCCAAGAATCTAAGTAAATCTATCGGGATCGAACCGCTGGCACCACTCATCACCCTGTTTGCCGGCTTTAAATTATTCGGGTTTTTAGGACTGATTGCGGGACCGGCTGTACTCGTCATCATCCAAGCTTtc                                                                    <  1:627681/150‑1 (MQ=255)

                                                                               aGCGGCAGCTGACCGAGCCCAAGCTACTAAGTAAATCTATCGGGATCGATCCGCTGGCAACACTCATCACCCTGGTTGCCGGCTTTAAATTATTCGGGTTTTTAGGGCTGATTGCGGGGCCGGCTGGAGGCGGCATCCTCCAAGCATtca                                                                   >  2:1155471/1‑150 (MQ=255)

                                                                                gCGGCAGCTGACAGAGCCCAAGATACTAAGTAAATCTATCGGGATCGATCCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAATTATTCGGGTTTTTAGGACTGATTGCGGGACCGGCTGTACTCGTCATCATCCAAGCTTtcat                                                                  >  1:69684/1‑150 (MQ=255)

                                                                                 cGGCAGCTGACAGAGCCCAAGATACTAAGTAAATCTATCGGGATCGATCCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAATTATTCGGGTTTTTAGGACTGATTGCGGGACCGGCTGTACTCGTCATCATCCAAGCTTtcatc                                                                 <  1:2592326/150‑1 (MQ=255)

                                                                                  ggCAGCTGACAGAGCCCAAGATACTAAGTAAATCTATCGGGATCGGTCCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAATTATTCGGGTTTTTAGGACTGATTGCGGGACCGGCCGGACTCGGCATCCTCCCAGCTTtcatca                                                                >  2:2581263/1‑150 (MQ=255)

                                                                                   gCAGCTGACAGAGCCCAAGATACTAAGTAAATCTATCGGGATCGATCCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAATTATTCGGGTTTTTAGGACTGATTGCGGGCCCGGCTGTACTCGTCATCATCCAAGCTTTCATcac                                                               <  1:1025315/150‑1 (MQ=255)

                                                                                    cAGCTGACAGAGCCCAAGATACTAAGTAAATCTAACGGGATCGATCCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAATTATTCCGGTTTATAGGACTGCTTGCGGGACCGGCGGTACTCGTCATCATCCAAGCTTTCATcaca                                                              >  1:49802/1‑150 (MQ=255)

                                                                                     aGCTGACAGAGCCCAAGATACTAAGTAAATCTATCGGGATCGATCCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAATTATTCGGGTTTTTAGGACTGATTGCGGGACCGGCTGTACTCGTCATCATCCAAGCTTTCATCacaa                                                             >  2:1187243/1‑150 (MQ=255)

                                                                                     aGCTGACAGAGCCCAAGATACTAAGTAAATCTATCGGGATCGATCCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAATTATTCGGGTTTTTAGGACTGATTGCGGGACCGGCTGTACTCGTCATCATCCAAGCTTTCATCacaa                                                             <  1:2785708/150‑1 (MQ=255)

                                                                                       cTGACAGAGCCCAAGATACTAAGTAAATCTATCGGGATCGATCCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAATTATTCGGGTTTTTAGGACTGATTGCGGGACCGGCTGTACTCGTCATCATCCAAGCTTTCATCacaaca                                                           <  2:732952/150‑1 (MQ=255)

                                                                                          aCAGAGCCCAAGATACTAAGTAAATCTATCGGGATCGATCCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAATTATTCGGGTTTTTAGGACTGATTGCGGGACCGGCTGTACTCGTCATCATCCAAGCTTTCATCACAACAGgc                                                        >  2:793162/1‑150 (MQ=255)

                                                                                              agCCCAAGATACTAAGTAAATCTATCGGGATCGATCCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAATTATTCGGGTTTTTAGGACTGATTGCGGGACCGGCTGTACTCGTCATCATCCAAGCTTTCATCACAACAGGCGCAt                                                    >  2:3868951/1‑150 (MQ=255)

                                                                                              agCCCAAGATACTAAGTAAATCTATCGGGATCGATCCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAATTATTCGGGTTTTTAGGACTGATTGCGGGACCGGCTGTACTCGTCATCATCCAAGCTTTCATCACAACAGGCGCAt                                                    >  2:2137670/1‑150 (MQ=255)

                                                                                               gCCCAAGATACTAAGTAAATCTATCGGGATCGATCCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAATTATTCGGGTTTTTAGGACTGGTTGCGGGACCGGCTGTACTCGTCATCATCCAAGCTTTCATCACAACAGGCGCAtt                                                   >  2:1671313/1‑150 (MQ=255)

                                                                                               gCCCAAGATACTAAGTAAATCTATCGGGATCGATCCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAAATATTCGGGTTTTTAGGACTGATTGCGGGACCGGCTGTACTAGACATCATCCAAGAATTCATCACAACAGGCGCAtt                                                   >  1:2287320/1‑150 (MQ=255)

                                                                                                cccAAGATACTAAGTAAATCTATCGGGATCGATCCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAATTATTCGGGTTTTTAGGACTGATTGCGGGACCGGCTGTACTCGTCATCATCCAAGCTTTCATCACAACAGGCGCATTa                                                  >  2:3489063/1‑150 (MQ=255)

                                                                                                  cAAGATACTAAGTAAATCTATCGGGATCGATCCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAATTATTCGGGTTTTTAGGACTGATTGCGGGACCGGCTGTACTCGTCATCATCCAAGCTTTCATCACAACAGGCGCATTaaa                                                >  2:3388806/1‑150 (MQ=255)

                                                                                                  cAAGATACTAAGTAAATCTATCGGGATCGATCCGCTGGCAACACCCATCACCCTGTTTGCCGGCTTTAAATTATTCGGGTTTTTAGGACTGATTGCGGGACCGGCTGTACTCGTCATCATCCAAGCTTTCATCACAACAGGCGCATTaaa                                                <  1:973236/150‑1 (MQ=255)

                                                                                                   aaGATACTAAGTAAATCTATCGGGACCGATCCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAATTATTCGGGTTTTTAGGACTGATTGCGGGACCGGCTGTACTCGTCATCATCCAAGCTTTCATCACAACAGGCGCATTaaaa                                               <  2:2646991/150‑1 (MQ=255)

                                                                                                         cTAAGTAAATCTATCGGGTTCGATCCGCTGGCAACACTCATCACCCTGTTTACGGGCTTTAAATTATTCGGGTTTTTAGGACTGATTGCGGGACCGGCTGTACTCGTCATCATCCAAGCTTTCATCACAACAGGCGCATTAAAAGAAata                                         <  1:2340517/150‑1 (MQ=255)

                                                                                                           aaGTAAATCTATCGGGATCGATCCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAATTATTCGGGTTTTTAGGACTGATTGCGGGACCGGCTGTACTCGTCATCATCCAAGCTTTCATCACAACAGGCGCATTAAAAGAAATATg                                       <  1:1751557/150‑1 (MQ=255)

                                                                                                             gTAAATCTATCGGGATCGATCCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAATTATTCGGGTTTTTAGGACTGATTGCGGGACCGGCTGTACTCGTCATCATCCAAGCTTTCATCACAACAGGCGCATTAAAAGAAATATGGt                                     <  2:915871/150‑1 (MQ=255)

                                                                                                              tAAATCTATCGGGATCGATCCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAATTATTCGGGTTTTTAGGACTGATTGCGGGACCGGCTGTACTCGTCATCATCCAAGCTTTCATCACAACAGGCGCATTAAAAGAAATATGGTc                                    <  2:1098332/150‑1 (MQ=255)

                                                                                                               aaaTCTATCGGGATCGATCCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAATTATTCGGGTTTTTAGGACTGATTGCGGGACCGGCTGTACTCGTCATCATCCAAGCTTTCATCACAACAGGCGCATTAAAAGAAATATGGTcc                                   <  1:1095238/150‑1 (MQ=255)

                                                                                                               aaaTCTATCGGGATCGATCCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAATTATTCGGGTTTTTAGGACTGATTGCGGGACCGGCTGGACTCGTCATCATCCAAGCTTTCATCACAACAGGCGCATTAAAAGAAAAATGGTcc                                   >  1:2637635/1‑150 (MQ=255)

                                                                                                                aaTCTATCGGGATCGATCCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAATTATTCGGGTTTTTAGGACTGATTGCGGGACCGGCTGTACTCGTCATCATCCAAGCTTTCATCACAACAGGCGCATTAAAAGAAATATGGTCCt                                  <  1:1814474/150‑1 (MQ=255)

                                                                                                                aaTCTATCGGGATCGATCCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAATTATTCGGGTTTTTAGGACTGATTGCGGGACCGGCTGTACTCGTCATCATCCAAGCTTTCATCACAACAGGCGCATTAAAAGAAATATGGTCCt                                  <  2:1047890/150‑1 (MQ=255)

                                                                                                                     atggggACCGATCCGCTGGCACCACTCATCACCCTGTTTGCCGGCTTTAAATTATTCGGGTTTTTAGGACTGATTGCGGGACCGGCTGTACTCGTCATCATCCAAGCTTTCATCACAACAGGCGCATTAAAAGAAATATGGTCCTATATc                             <  1:1221968/147‑1 (MQ=255)

                                                                                                                       cGGGATCGATCCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAATTATTCGGGTTTTTAGGACTGATTGCGGGACCGGCTGTACTCGTCATCATCCAAGCTTTCATCACAACAGGCGCATTAAAAGAAATATGGTCCTATATCAc                           <  1:77492/150‑1 (MQ=255)

                                                                                                                        gggATCGATCCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAATTATTCGGGTTTTTAGGACTGATTGCGGGACCGGCTGTACTCGTCATCATCCAAGCTTTCATCACAACAGGCGCATTAAAAGAAATATGGTCCTATATCAcc                          >  2:2047822/1‑150 (MQ=255)

                                                                                                                        gggAACGATCCGCTGGCAACCCCCATCACCCTGTTTGCCGGCTTTAAATTATTCGGGTTTTTAGGACTGATTGCGGGACCGGCTGTACTCGTCAACATCCAAGCTTTCATCACAACAGGCGCATTAAAAGAAATATGGTCCTATATCAcc                          <  1:2415570/150‑1 (MQ=255)

                                                                                                                          gatcgatcCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAATTATTCGGGTTTTTAGGACTGATTGCGGGACCGGCTGTACTCGTCATCATCCAAGCTTTCATCACAACAGGCGCATTAAAAGAAATATGGTCCTATATCACCGt                        <  1:2913955/150‑1 (MQ=255)

                                                                                                                            tcgatcCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAATTATTCGGGTTTTTAGGACTGATTGCGGGACCGGCTGTACTCGTCATCATCCAAGCTTTCATCACAACAGGCGCATTAAAAGAAATATGGTCCTATATCACCGTTc                      >  2:3757418/1‑150 (MQ=255)

                                                                                                                             cgatcCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAATTATTCGGGTTTTTAGGACTGATTGCGGGACCGGCTGTACTCGTCATCATCCAAGCTTTCATCACAACAGGCGCATTAAAAGAAATATGGTCCTATATCACCGTTCa                     >  2:1917792/1‑150 (MQ=255)

                                                                                                                             cgatcCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAATTATTCGGGTTTTTAGGACTGATTGCGGGACCGGCTGTACTCGTCATCATCCAAGCTTTCATCACAACAGGCGCATTAAAAGAAATATGGTCCTATATCACCGTTCa                     >  2:235434/1‑150 (MQ=255)

                                                                                                                             cgatcCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAATTATTCGGGTTTTTAGGACTGATTGCGGGACCGGCTGTACTCGTCATCATCCAAGCTTTCATCACAACAGGCGCATTAAAAGAAATATGGTCCTATATCACCGTTCa                     <  2:1529644/150‑1 (MQ=255)

                                                                                                                             cgatcCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAATTATTCGGGTTTTTAGGACTGATTGCGGGACCGGCTGTACTCGTCATCATCCAAGCTTTCATCACAACAGGCGCATTAAAAGAAAAATGGTCCTATATCACCGTTCa                     >  1:3004571/1‑150 (MQ=255)

                                                                                                                              gatcCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAATTATTCGGGTTTTTAGGACTGATTGCGGGACCGGCTGTACTCGTCATCATCCAAGCTTTCATCACAACAGGCGCATTAAAAGAAATATGGTCCTATATCACCGTTCAg                    >  2:225194/1‑150 (MQ=255)

                                                                                                                              gatcCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAATTATTCGGGTTTTTAGGACTGATTGCGGGACCGGCTGTACTCGTCATCATCCAAGCTTTCATCACAACAGGCGCATTAAAAGAAATATGGTCCTATATCACCGTTCAg                    >  2:1790826/1‑150 (MQ=255)

                                                                                                                                tcCGCTGGCACCACTCATCACCCTGTTTGCCGGCTTTAAATTATTCGGGTTTTTAGGACTGATTGCGGGACCGGCTGTACTCGTCATCATCCAAGCTTTCATCACAACAGGCGCATTAAAAGAAATATGGTCCTATATCACCGTTCAGCa                  <  2:1417172/150‑1 (MQ=255)

                                                                                                                                tcCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAATTATTCGGGTTTTTAGGACTGATTGCGGGACCGGCTGTACTCGTCATCATCCAAGCTTTCATCACAACAGGCGCATTAAAAGAAATATGGTCCTATATCACCGTTCAGCa                  >  1:2436928/1‑150 (MQ=255)

                                                                                                                                  cGCTGGCACCACTCATCACCCTGTTTGCCGGCCTTATATTCATCGGGTTTTTAGGACTGATTGCGGGACCGGCTGTACCCGTCATCATCCAAGCTTTCATCACAACAGGCGCATTAAAAGAAATATGGTCCTATATCACCGTTCAGCaaa                <  1:2771989/150‑1 (MQ=255)

                                                                                                                                   gCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAATTATTCGGGTTTTTAGGACTGATTGCGGGACCGGCTGGACTCGTCATCATCCAAGCTTTCATCACAACAGGCGCATTAAAAGAAATATGGTCCTATATCACCGTTCAGCaaaa               >  1:3801745/1‑150 (MQ=255)

                                                                                                                                    cTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAATTATTCGGGTTTTTAGGACTGATTGCGGGACCGGCTGGACTCGTCATCATCCAAGCTTTCATCACAACAGGCGCATTAAAAGAAATATGGTCCTATATCACCGTTCAGCaaaaa              >  1:362127/1‑150 (MQ=255)

                                                                                                                                       gCAACACTCATCACCCTGTTTGCGGGCTTTAAATTATTCGGGTTTTTAGGACTGATTGCGGGACCGGCTGTACTCGTCATCATCCAAGCTTTCATCACAACAGGCGCATTAAAAGAAATATGGTCCTATATCACCGTTCAGCAAAAATaa           <  1:1123541/150‑1 (MQ=255)

                                                                                                                                          acacTCATCACCCTGTTTGCCGGCTTTAAATTATTCGGGTTTTTAGGACTGATTGCGGGACCGGCTGTACTCGTCATCATCCAAGCTTTCAACACAACAGGCGCATTAAAAGAAATATGGTCCTATATCACCGTTCAGCAAAAATAAAAc        <  2:263563/150‑1 (MQ=255)

                                                                                                                                              tcatcaCCCTGTTTGCCGGCTTTACATTATTCGGGTGTTTAGGACTGATTGCGGGACCGGCTGTGCTCGTCATCATCCAAGCTTTCATCACAACAGGCGCATTAAAAGAAATATGGTCCTATATCACCGTTCAGCAAAAATAAAACGGCa    <  1:3217745/150‑1 (MQ=255)

                                                                                                                                              tcatcaCCCTGTTTGCCGGCTTTAAATTATTCGGGTTTTTAGGACTGATTGCGGGACCGGCTGTACTCGTCATCATCCAAGCTTTCATCACAACAGGCGCATTAAAAGAAATATGGTCCTATATCACCGTTCAGCAAAAATAAAACGGCa    <  2:1612589/150‑1 (MQ=255)

                                                                                                                                              tcatcaCCCTGTTTGCCGGCTTTAAATTATTCGGGTTTTTAGGACTGATTGCGGGACCGGCTGTACTCGTCATCATCCAAGCTTTCATCACAACAGGCGCATTAAAAGAAATATGGTCCTAAATCACCGTTCAGCAAAAATAAAACGGCa    >  2:1867324/1‑150 (MQ=255)

                                                                                                                                              tcatcaCCCTGTTGGCCGGCTTTAAATTATTCGGGTTTTTAGGACTGATTGCGGGACCGGCTGTACTCGTCATCATCCAGGCTTTCATCACCACAGGCGCATTAAAAGAAATATGGTCCTATATCACCGTTCAGCAAAAATAAAACggaa    >  2:1325657/1‑148 (MQ=255)

                                                                                                                                               cATCACCCTGTTTGCCGGCTTTAAATTATTCGGGTTTTTAGGACTGATTGCGGGACCGGCTGTACTCGTCATCATCCAAGCTTTCATCACAACAGGCGCATAAAAAGAAATATGGTCCTATATCACCGATCACCAAAAATAAAACGGCAg   >  2:444502/1‑150 (MQ=255)

                                                                                                                                                aTCACCCTGTTTGCCGGCTTTAAATTATTCGGGTTTTTAGGACTGGTTGCGGCACCGGCTGTACTCGTCATCATCCAAGCTTTCATCACAACAGGCGCATTAAAAGAAATATGGTCCTATATCACCGTTCAGCAAAACTAAAACGGAAGc  >  1:34251/1‑150 (MQ=255)

                                                                                                                                                aTCACCCTGTTTGCCGGCTTTAAATTATTCGGGTTTTTAGGACTGATTGCGGGACCGGCTGTACTCGTCATCATCCAAGCTTTCATCACAACAGGCGCATTAAAAGAAATATGGTCCTATATCACCGTTCAGCAAAAATAAAACGGCAGc  >  1:2871253/1‑150 (MQ=255)

TGGATTTTGTATTTATCGATTACGGGCCAGCTGCCCCAAGCAATCGGAATTGGTATCCTGTACCTCGTCGTTCTTATTCAGCGGCAGCTGACAGAGCCCAAGATACTAAGTAAATCTATCGGGATCGATCCGCTGGCAACACTCATCGCCCTGTTTGCCGGCTTTAAATTATTCGGGTTTTTAGGACTGATTGCGGGACCGGCTGTACTCGTCATCATCCAAGCTTTCATCACAACAGGCGCATTAAAAGAAATATGGTCCTATATCACCGTTCAGCAAAAATAAAACGGCAGC  >  CP006881/2801849‑2802142

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 25 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 38 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A