Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A12 F59 I7 R4 119 106.4 3785156 95.3% 3607253 127.3

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP006881 2,801,996 G→A A327T (GCC→ACC)  U712_14440 → UPF0118 membrane protein ytvI

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0068812,801,9960GA98.9% 267.1 / NA 89A327T (GCC→ACC) U712_14440UPF0118 membrane protein ytvI
Reads supporting (aligned to +/- strand):  ref base G (0/0);  major base A (41/47);  minor base C (1/0);  total (42/47)
Fisher's exact test for biased strand distribution p-value = 4.72e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

TTATCGATTACGGGCCAGCTGCCCCAAGCAATCGGAATTGGTATCCTGTACCTCGTCGTTCTTATTCAGCGGCAGCTGACAGAGCCCAAGATACTAAGTAAATCTATCGGGATCGATCCGCTGGCAACACTCATCGCCCTGTTTGCCGGCTTTAAATTATTCGGGTTTTTAGGACTGATTGCGGGACCGGCTGTACTCGTCATCATCCAAGCTTTCATCACAACAGGCGCATTAAAAGAAATATGGTCCTATATCACCG  >  CP006881/2801861‑2802119
                                                                                                                                       |                                                                                                                           
ttATCGATTACGGGCCAGCTGCCCCAAGCAATCGGAATTGGTATCCTGTACCTCGTCGTTCTTATTCAGCGGCAGCTGACAGAGCCCAAGATACTAAGTAAATCTATCGGGATCGATCCGCTGGCACCACTCATCAcc                                                                                                                           >  8:125966/1‑138 (MQ=255)
ttATCGATTACGGGCCAGCTGCCCCAAGCAATCGGAATTGGTATCCTGTACCTCGTCGTTCTTATTAAGCGGCAGCTGCCAGAGCCCAAGATACTAAGTAAATCTATCGGGATCGATCCGCTGGCAACACTCATCAccc                                                                                                                          >  1:131822/1‑139 (MQ=255)
       ttACGGGCCAGCTGCCCCAAGCAATCGGAATTGGTATCCTGTACCTCGTCGTTCTTATTCAGCGGCAGCTGACAGAGCCCAAGATACTAAGTAAATCTATCGGGATCGATCCGCTGGCAACACTCATCACCCTGTTTGc                                                                                                                   <  7:14418/139‑1 (MQ=255)
                       ccAAGCAATCGGAATTGGTATCCTGTACCTCGTCGTTCTTATTCAGCGGCAGCTGACAGAGCCCAAGATACTAAGTAAATCTATCGGGATCGATCCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAATTATTc                                                                                                   >  3:232391/1‑139 (MQ=255)
                       ccAAGCAATCGGAATTGGTATCCTGTACCTCGTCGTTCTTATTAAGCGGCAGCGGCCAGCGCCCAAGCGACTAAGTTAATCTATCTGGAGCGGTCCGCTGGGAAAACTACTCACCATGTTTGCCGGCTTTAAattatag                                                                                                   >  2:269891/1‑137 (MQ=255)
                         aaGGAATCGGAATTGGTATCCTGTACCTCGTCGTTCTTATTCAGCGTCAGCTGACAGAGCCCAAGATACTAAGTAAATCTATAGGGATCGATCCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAATTATTCgg                                                                                                 <  4:465841/139‑1 (MQ=255)
                         aaGCAATCGGAATTGGTATCCTGTACCTCGTCGTTCTTATTCAGCGGCAGCTGACAGAGCCCAAGATACTAAGTAAATCTATCGGGATCGATCCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAATTATTCgg                                                                                                 <  6:6087/139‑1 (MQ=255)
                         aaGCAATCGGAATTGGTATCCTGTACCTCGTCGTTCTTATTCAGCGGCAGCTGACAGAGCCCAAGATACTAAGTAAATCTATCGGGATCGATCCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAATTATTCgg                                                                                                 <  7:362508/139‑1 (MQ=255)
                          aGCAATCGGAATTGGTATCCTGTACCTCGTCGTTCTTATTCAGCGGCAGCTGACAGAGCCCAAGATACTAAGTAAATCTATCGGGATCGATCCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAATTATTCggg                                                                                                >  2:246883/1‑139 (MQ=255)
                           gCAATCGGAATTGGTATCCTGTACCTCGTCGTTCTTATTCAGCGGCAGCTGACAGAGCCCAAGATACTAAGTAAATCTATCGGGATCGATCCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAATTATTCGGGt                                                                                               <  3:152482/139‑1 (MQ=255)
                               tCGGAATTGGTATCCTGTACCTCGTCGTTGTTATTGATCGGCAGCTGACAGAGCCCCAGATAATAAGGAAATCAATAGGGATGGATACGCTGGCAACCCTCCAAACCCAGGTTGCCGGCTTTTAATTTTTACGGttttt                                                                                           >  8:168299/1‑139 (MQ=255)
                                   aaTTGGTATCCTGTACCTCGTCGTTCTTATTCAGCGGCAGCTGACAGAGCCCAAGATACTAAGTAAATCTATCGGGATCGATCCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAATTATTCGGGTTTTTAGGa                                                                                       <  8:383529/139‑1 (MQ=255)
                                           tCCTGTACCTCGTCGTTCTTATTCAGCGGCAGCTGACAGAGCCCAAGATACTAAGTAAATCTATCGGGATCGATCCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAATTATTCGGGTTTTTAGGACTGATTg                                                                                <  3:421503/138‑1 (MQ=255)
                                             cTGTACCTCGTCGTTCTTATTCAGCGGCAGCTGACAGAGCCCAAGATACTAAGTAAATCTATCGGGATCGATCCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAATTATTCgg                                                                                                 >  8:356020/1‑119 (MQ=255)
                                             cTGTACCTCGTCGTTCTTATTCAGCGGCAGCTGACAGAGCCCAAGATACTAAGTAAATCTATCGGGATCGATCCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAATTATTCgg                                                                                                 <  7:356020/119‑1 (MQ=255)
                                             cTGTACCTCGTCGTTCTTATTCAGCGGCAGCTGACAGAGCCCAAGATACTAAGTAAATCTATCGGGATCGATCCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAATTATTCGGGTTTTTAGGACTGATTGCgg                                                                             >  8:258039/1‑139 (MQ=255)
                                             cTGTACCTCGTCGTTCTTATTAAGCGGCCGCTGACAGCCCCCAAGATACTAAGTAAATCTATAGGGATCGATCCGCTGGCAACACACATCACCCAGTTTGCCGGCTTTAAATTTATCTGGTTTTTATGCCTGATTTCgg                                                                             >  6:134620/1‑139 (MQ=255)
                                             cTGTACCTCGTCGTTCTTATTAAGCGGCAGCTGACAGCGCCCAAGATACTAAGTAAATCTATCGGGATCGATCCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAATTATTCGGGTTTTTTGGACTGATTGCgg                                                                             >  1:354008/1‑139 (MQ=255)
                                                tACCTCGTCGTTGTTATTAAGCGGCAGCTGACAGAGCCCAAGATACTAAGTAAATCTATCGGGATCGCTCCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAATTATTCGGGTTTTTATGACTGATTTCGGGAc                                                                          >  4:426579/1‑139 (MQ=255)
                                                tACCTCGTCGTTCTTATTCAGCGGCAGCTGACAGAGCCCAAGATACTAAGTAAATCTATCGGGATCGATCCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAATTATTCGGGTTTTTAGGACTGATTGCggg                                                                            <  4:232391/137‑1 (MQ=255)
                                                tACCTCGTCGGTCATAATCAGCGGCAGCTGACAGAGCCCAAGATACTAAGTAAATCTATCGGGATCGATCCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAATTATTCGGGTTTTTAGGACTGATTGCggg                                                                            <  3:274064/137‑1 (MQ=255)
                                                  ccTCGTCGTGCTTTTTAAGCGGCAGCTGACAGCGCCCAAGATACTAAGGAAATCTATCGGGATCGATCCGCGGGCACCCCTCATCAACCGGGTTGCCGGCGGTAAATTATTAGGGTTTTTTGGAAGGATTGCGGGACCg                                                                        >  4:274064/1‑139 (MQ=255)
                                                   cTCGTAGCTCTTATTCAGCGGCAGCTGACAGAGCCCAAGATACTAAGTAAATCTATCCGGATCGATCCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAATTATTCGGGTTTTTAGGACTGATTGCGGGACCgg                                                                       <  5:402339/139‑1 (MQ=255)
                                                     cgtcgtTCTTATTCAGCGGCAGCTGCCAGAGCCCAAGATACAAAGTAAATCAATCGGGATCGATCCGCTGGCAACACTCATCAACCTGTTTGCCGGCTTTAAATTAATAGGGTTTTTAGGACTTATTTCGGGACCgg                                                                       >  8:332916/1‑137 (MQ=255)
                                                     cgtcgtTCTTATTAAGCGGCAGCTGACAGAGCCCAAGATACTAAGTAAATCTATCGGGATCGATCCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAATTATTCGGGTTTTTAGGACTGATTGCGGGACCGGCt                                                                     >  8:420323/1‑139 (MQ=255)
                                                       tcgtTATTATTAAGCGGCAGCTGTCAGAGCCCAAGATTCTAAGTAAATCTATCGGGCTCGATGCGATGGGAACACTCCAAACCCTGTTTGCCGGCTTTAAATTATTAGGGTTTTTTGGAGTGATTGCGGGACCGGCTg                                                                    >  4:429192/1‑138 (MQ=255)
                                                        cgtTCTTATTCAGCGGCAGCTGACAGAGCCCAAGATACTAAGTAAATCTATCGGGATCGATCCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAATTATTCGGGTTTTTAGGa                                                                                       <  7:101785/118‑1 (MQ=255)
                                                        cgtTCTTATTCAGCGGCAGCTGACAGAGCCCAAGATACTAAGTAAATCTATCGGGATCGATCCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAATTATTCGGGTTTTTAGGa                                                                                       >  8:101785/1‑118 (MQ=255)
                                                        cgtTCTTATTCAGCGGCAGCTGACAGAGCCCAAGATACTAAGTAAATCTATCGGGATCGATCCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAATTATTCGGGTTTTTAGGACTGATTGCGGGACCGGCTGTa                                                                  <  4:276242/139‑1 (MQ=255)
                                                          ttCTTATTAAGCGGCAGCGGGCAGAGCCCAAGATACAAATTAAATATATAGGGATCGATACCCGGGCAACACTCCAGACCCTGGTTGCCGGCGTTTAATTATTCGGGTTTTTTTGGGTGATTGCGGGACCGGCTGTaag                                                                >  2:359135/1‑137 (MQ=255)
                                                               aTTCAGCGGCAGCTGACAGAGCCCAAGATACTAAGTAAATCTATCGGGATCGATCCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAATTATTCGGGTTTTTAGGACTGATTGCGGGACCGGCTGTACTCGtc                                                            <  7:258039/138‑1 (MQ=255)
                                                               aTTCAGCGGCAGCTGACAGAGCCCAAGATACTAAGTAAATCTATCGGGATCGATCCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAATTATTCGGGTTTTTAGGACTGATTGCGGGACCGGCTGTACTCGt                                                             <  8:334560/137‑1 (MQ=255)
                                                                   aGCGGCAGCTGACAGAGCCCAAGATACTAAGTAAATCTATCGGGATCGATCCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAATTATTCGGGTTTTTAGGACTGATTGCggg                                                                            <  2:79071/118‑1 (MQ=255)
                                                                   aGCGGCAGCTGACAGAGCCCAAGATACTAAGTAAATCTATCGGGATCGATCCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAATTATTCGGGTTTTTAGGACTGATTGCggg                                                                            >  1:79071/1‑118 (MQ=255)
                                                                     cGGCAGCTGACAGAGCCCAAGATACTAAGTAAATCTATCGGGATCGATCCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAATTATTCGGGTTTTTAGTACTGATTGCTGGACCGGCTTTACTCGTCatcatc                                                      >  4:6133/1‑138 (MQ=255)
                                                                     cGGCAGCTGACAGAGCCCAAGATACTAAGTAAATCTATCGGGATCGATCCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAATTATTCGGGTTTTTAGGACTGATTg                                                                                <  2:468530/112‑1 (MQ=255)
                                                                     cGGCAGCTGACAGAGCCCAAGATACTAAGTAAATCTATCGGGATCGATCCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAATTATTCGGGTTTTTAGGACTGATTg                                                                                >  1:468530/1‑112 (MQ=255)
                                                                     cGGCAGCTGACAGAGCCCAAGATACTAAGTAAATCTATCGGGATCGATCCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAATTATTCGGGTTTTTAGGACTGATTTCGGTACCGGCTGTACTCTTCatcatc                                                      >  4:140/1‑138 (MQ=255)
                                                                     cGGCAGCTGACAGAGACCAAGATACTAAGTAAATCTATCGGGATCGATCCGCTGGCAACACTCATCACCCTGTTTGACGGCTTTAAATTATTCGTGTTTTTAGGAATGATTGCGGGACCGGCTGTACTCGTCatcatc                                                      >  5:104042/1‑138 (MQ=255)
                                                                          gCTGACAGAGCCCAAGATACTAAGTAAATCTATCGGGATCGATCCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAATTATTCGGGTTTTTAGGACTGATTGCGGGACCGGCTGTACTCGTCATCATCCAAGCt                                                <  4:89564/139‑1 (MQ=255)
                                                                          gCTGACAGAGCCCAAGATACTAAGTAAATCTATCGGGATCGATCCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAATTATTCGGGTTTTTAGGACTGATTGCGGGACCGGCTGTACTCGTCATCATCCAAGCt                                                <  5:134620/139‑1 (MQ=255)
                                                                          gCTGACAGAGCCCAAGATACTAAGTAAATCTATCGGGATCGATCCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAATTATTCGGGTTTTTAGGACTGATTGCGGGACCGGCTGTACTCGTCATCATCCAAGCt                                                <  6:365267/139‑1 (MQ=255)
                                                                          gCTGACAGAGCCCAAGATACTAAGTAAATCTATCGGGATCGATCCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAATTATTCGGGTTTTTAGGACTGATTGCGGGACCGGCTGTACTCGTCATCATCCAAGCt                                                <  6:371653/139‑1 (MQ=255)
                                                                             gACAGAGCCCAAGATACTAAGTAAATCTATCGGGATCGATCCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAATTATTCGGGTTTTTAGGACTGATTGCGGGACCGGCTGTACTCGTCATCATCCAAGCttt                                              >  4:205338/1‑138 (MQ=255)
                                                                               cAGAGCCCAAGATACTAAGTAAATCTATCGGGCTCGATCCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAATTATTCGGGTTTTTAGGACTGATTGCGGGACCGGCTGTACTCGTCATCATCCAAGCTTtcat                                           <  5:205457/139‑1 (MQ=255)
                                                                               cAGAGCCCAAGATACTAAGTAAATCTATCGGGATCGATCCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAATTATTCGGGTTTTTAGGACTGATTGCGGGACCGGCTGTACTCGTCATCATCCAAGCTTtcat                                           <  3:42913/139‑1 (MQ=255)
                                                                                  agCCCAAGATACTAAGTAAATCTATCGGGATCGATCCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAATTATTCGGGTTTTTAGGACTGATTGCGGGACCGGCTGTACTCGTCATCATCCAAGCTTtcatca                                         >  4:123311/1‑138 (MQ=255)
                                                                                  agCCCAAGATACTAAGTAAATCTATCGGGATCGATCCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAATTATTCGGGTTTTTAGGACTGATTGCGGGACCGGCTGTACTCGTCATCATCCAAGCTTtcatca                                         >  7:123628/1‑138 (MQ=255)
                                                                                    cccAAGATACTAAGTAAATCTATCGGGATCGGTCCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAATTATTCGGGTTTTTAGGACTGATTGCGGGACCGGCTGTACTCGTCATCATCCAAGCTTTCATCacaa                                      >  6:196876/1‑139 (MQ=255)
                                                                                        aGATACTAAGTAAATCTATCTGGATCGATCCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAATTATTCGGGTTTTTAGGACTGATTGCGGGACCGGCTGTACTCGTCATCATCCAAGCTTTCATCACAACAgg                                  <  3:6133/139‑1 (MQ=255)
                                                                                        aGATACTAAGTAAATCTATCGGGATCGATCCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAATTATTCGGGTTTTTAGGACTGATTGCGGGACCGGCTGTACTCGTCATCATCCAAGCTTTCATCACAACAgg                                  <  5:440598/139‑1 (MQ=255)
                                                                                        aGATACTAAGTAAATCTATCGGGATCGATCCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAATTATTCGGGTTTTTAGGACTGATTGCGGGACCGGCTGTACTCGTCATCATCCAAGCTTTCATCACAACAgg                                  <  3:140/139‑1 (MQ=255)
                                                                                        aGATACTAAGTAAATCTATCGGGATCGATCCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAATTATTCGGGTTTTTAGGACTGATTGCGGGACCGGCTGTACTCGTCATCATCCAAGCTTTCATCACAACAgg                                  <  2:227819/139‑1 (MQ=255)
                                                                                         gATACTAAGTAAATCTATCGGGATCGATCCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAATTATTCGGGTTTTTAGGACTGATTGCGGGACCGGCTGTACTCGTCATCATCCAAGCTTTCATCACAACAGgc                                 >  3:288979/1‑139 (MQ=255)
                                                                                             cTAAGTAAATCTATCGGGATCGATCCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAATTATTCGGGTTTTTAGGACTGATTGCGGGACCGGCTGTACTCGTCATCATCCAAGCTTTCATCACAACAGGCGCAt                             <  1:143974/139‑1 (MQ=255)
                                                                                             cTAAGTAAATCTATCGGGATCGATCCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAATTATTCGGGTTTTTAGGACTGATTGCGGGACCGGCTGTACTCGTCATCATCCAAGCTTTCATCACAACAGGCGCAt                             <  4:288979/139‑1 (MQ=255)
                                                                                             cTAAGTAAATCTATCGGGATCGATCCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAATTATTCGGGTTTTTAGGACTGATTGCGGGACCGGCTGTACTCGTCATCATCCAAGCTTTCATCACAACAGGCGCAt                             >  2:143974/1‑139 (MQ=255)
                                                                                              tAAGTAAATCTATCGGGATCGATCCGCTGGCAACACTCATCCCCCTGTTTGCCGGCTTTAAATTATTCGGGTTTTTAGGACTGATTGCGGGACCGGCTGTACTCGTCATCATCCAAGCTTTCATCACAACTGGCGCAt                             >  8:436504/1‑138 (MQ=255)
                                                                                              tAAGTAAATCTATCGGGATCGATCCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAATTATTCGGGTTTTTAGGACTGATTGCGGGACCGGCTGTACTCGTCATCATCCAAGCTTTCATCACAACAGGCGCAt                             >  2:134980/1‑138 (MQ=255)
                                                                                              tAAGTAAATCTATCGGGATCGATCCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAATTATTCGGGTTTTTAGGACTGATTGCGGGACCGGCTGTACTCGTCATCATCCAAGCTTTCATCACAACAGGCGCAt                             >  4:252942/1‑138 (MQ=255)
                                                                                              tAAGTAAATCTATCGGGATCGATCCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAATTATTCGGGTTTTTAGGACTGATTGCGGGACCGGCTGTACTCGTCATCATCCAAGCTTTCATCACAACAGGCGCAt                             >  2:320931/1‑138 (MQ=255)
                                                                                               aaGTAAATCTATCGGGATCGATCCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAATTATTCGGGTTTTTAGGACTGATTGCGGGACCGGCTGTACTCGTCATCATCCAAGCTTTCATCACAACAGGCGCAtt                            >  5:227669/1‑138 (MQ=255)
                                                                                               aaGTAAATCTATCGGGATCGATCCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAATTATTCGGGTTTTTAGGACTGATTGCGGGACCGGCTGTACTCGTCATCATCCAAGCTTTCATCACAACAGGCGCAtt                            >  3:325913/1‑138 (MQ=255)
                                                                                                aGTAAATCTATCGGGATCGATCCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAATTATTCGGGTTTTTAGGACTGATTGCGGGACCGGCTGTACTCGTCATCATcc                                                     >  4:5331/1‑112 (MQ=255)
                                                                                                aGTAAATCTATCGGGATCGATCCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAATTATTCGGGTTTTTAGGACTGATTGCGGGACCGGCTGTACTCGTCATCATcc                                                     <  3:5331/112‑1 (MQ=255)
                                                                                                aGTAAATCTATCGGGATCGATCCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAATTATTCGGGTTTTTAGGACTGATTGCGGGACCGGCTGTACTCGTCATCATCCAAGCTTTCATCACAACAGGCGCATTaa                          <  6:382621/139‑1 (MQ=255)
                                                                                                aGTAAATCTATCGGGATCGATCCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAATTATTCGGGTTTTTAGGACTGATTGCGGGACCGGCTGTACTCGTCATCATCCAAGCTTTCATCACAACAGGCGCATTa                           >  1:442758/1‑138 (MQ=255)
                                                                                                  tAAATCTATCGGGATCGATCCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAATTATTCGGGTTTTTAGGACTGATTGCGGGACCGGCTGTACTCGTCATCATCCAAGCTTTCATCACAACAGGCGCATTaaaa                        <  7:37190/139‑1 (MQ=255)
                                                                                                    aaTCTATCGGGATCGATCCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAATTATTCGGGTTTTTAGGACTGATTGCGGGACCGGCTGTACTCGTCATCATCCAAGCTTTCATCACAACAGGCGCATTAAAAg                       <  2:131822/138‑1 (MQ=255)
                                                                                                     aTCTATCGGGATCGATCCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTa                                                                                                           <  1:234200/53‑1 (MQ=255)
                                                                                                     aTCTATCGGGATCGATCCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTa                                                                                                           >  2:234200/1‑53 (MQ=255)
                                                                                                     aTCTATCGGGATCGATCCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAATTATTCGGGTTTTTAGGACTGATTGCGGGACCGGCTGTACTCGTCATCATCCAACCTTGCATCACAACAGGCGCATTAAAAGa                      >  1:438002/1‑138 (MQ=255)
                                                                                                          tCGGGATCGATCCGCTGGCAACACTCATGACCCTGTTTGACGTCTTTAAATTATTCGGGTTTTTAGGACTGATTGCGGGACCGGCTGTACTCGTCATCATCCAAGCTTTCATCACAACAGGCGCATTAAAAGAAata                  <  1:85766/137‑1 (MQ=255)
                                                                                                          tCGGGATCGATCCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAATTATTCGGGTTTTTAGGACTGATTGCGGGa                                                                           >  7:439780/1‑80 (MQ=255)
                                                                                                          tCGGGATCGATCCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAATTATTCGGGTTTTTAGGACTGATTGCGGGa                                                                           <  8:439780/80‑1 (MQ=255)
                                                                                                          tCGGGATCGATCCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAATTATTCGGGTTTTTAGGACTGATTGCGGGACCGGCTGTACTCGtca                                                           >  8:245610/1‑96 (MQ=255)
                                                                                                          tCGGGATCGATCCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAATTATTCGGGTTTTTAGGACTGATTGCGGGACCGGCTGTACTCGtca                                                           <  7:245610/96‑1 (MQ=255)
                                                                                                          tCGGGATCGATCCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAATTATTCGGGTTTTTAGGACTGATTGCGGGACCGGCTGTACTCGTCATCATCCAAGCTTTCATCACAACAGGCGCATTAAAAGAAata                  <  7:420323/137‑1 (MQ=255)
                                                                                                          tCGGGATCGATCCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAATTATTCGGGTTTTTAGGACTGATTGCGGGACCGGCTGTACTCGTCATCATCCAAGCTTTCATCACAACAGGCGCATTAAAAGAAata                  <  7:332916/137‑1 (MQ=255)
                                                                                                          tCGGGATCGATCCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAATTATTCGGGTTTTTAGGACTGATTGCGGGACCGGCTGTACTCGTCATCATCCAAGCTTTCATCACAACAGGCGCATTAAAAGAAata                  <  1:46427/137‑1 (MQ=255)
                                                                                                          tCGGGATCGATCCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAATTATTCGGGTTTTTAGGACTGATTGCGGGACCGGCTGTACTCGTCATCATCCAAGCTTTCATCACAACAGGCGCATTAAAAGAAata                  <  1:456404/137‑1 (MQ=255)
                                                                                                          tCGGGATCGATCCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAATTATTCGGGTTTTTAGGACTGATTGCGGGACCGGCTGTACTCGTCATCATCCAAGCTTTCATCACAACAGGCGCATTAAAAGAAATATg                >  3:100567/1‑139 (MQ=255)
                                                                                                           cGGGATCGAACCGCTTGCACCACTCCTCACCCGGTTTGCCGGAGTTAAATTATTCGGGGATTAAGTACGGATTGCGGGCCCGCCTGTCGTCGTCAAAATCCACGCTTTCATCACAACAGGCTCATTAACCGAAATCTgg               <  2:172975/139‑1 (MQ=255)
                                                                                                            gggATCGGTCCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAATTATTCGGGTTTTTAGGACTGATTGCGGGACCGGCTGTACTCGTCATCATCCAAGCTTTCATCACAACAGGCGCATTAAAAGAAATATgg               <  5:196876/138‑1 (MQ=255)
                                                                                                            gggATCGCTCCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAATTATTCGGGTTTTTAGGACTGATTGCGGGACCGGCTGTACTCGTCATCATCCAAGCTTTCATCACAACAGTCGCATTAAAAGAAATATgg               <  1:269891/138‑1 (MQ=255)
                                                                                                            gggATCGATCCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAATTATTCGGGTTTTTAGGACTGATTGCGGGACCGGCTGTACTCGTCATCATCCAAGCTTTCATCACAACAGGCGCATTAAAAGAAATATgg               <  3:429192/138‑1 (MQ=255)
                                                                                                            gggATCGATCCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAATTATTCGGGTTTTTAGGACTGATTGCGGGACCGGCTGTACTCGTCATCATCCAAGCTTTCATCACAACAGGCGCATTAAAAGAAATATgg               <  1:246883/138‑1 (MQ=255)
                                                                                                             ggATCGATCCGCTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAATTATTCGGGTTTTTAGGACTGATTGCGGGACCGGCTGTACTCGTCATCATCCAAGCTTTCATCACAACAGGCGCATTAAAAGAAATATGGTc             <  3:252942/139‑1 (MQ=255)
                                                                                                                        cTGGCAACACTCATCACCCTGTTTGCCGGCTTTAAATTATTCGGGTTTTTAGGACTGATTGCGGGACCGGCTGTACTCGTCATCATCCAAGCTTTCATCACAACAGGCGCATTAAAAGAAATATGGTCCTATATCACCg  >  4:408074/1‑139 (MQ=255)
                                                                                                                                       |                                                                                                                           
TTATCGATTACGGGCCAGCTGCCCCAAGCAATCGGAATTGGTATCCTGTACCTCGTCGTTCTTATTCAGCGGCAGCTGACAGAGCCCAAGATACTAAGTAAATCTATCGGGATCGATCCGCTGGCAACACTCATCGCCCTGTTTGCCGGCTTTAAATTATTCGGGTTTTTAGGACTGATTGCGGGACCGGCTGTACTCGTCATCATCCAAGCTTTCATCACAACAGGCGCATTAAAAGAAATATGGTCCTATATCACCG  >  CP006881/2801861‑2802119

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A