Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.

ALE, Flask, Isolate	Predicted Mutations	Mean Coverage	Total Reads	Percent Mapped	Mapped Reads	Average Read Length
A11 F58 I1 R3	118	63.0	2369054	95.4%	2260077	127.1

Breseq alignment

BRESEQ :: Evidence

Predicted mutation
evidence	seq id	position	mutation	annotation	gene	description
RA	CP006881	2,054,382	A→C	intergenic (+60/‑41)	U712_10180 → / → U712_10185	Putative aldehyde dehydrogenase dhaS/Squalene‑‑hopene cyclase

Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	CP006881	2,054,382	0	A	C	100.0%	247.7 / NA	66	intergenic (+60/‑41)	U712_10180/U712_10185	Putative aldehyde dehydrogenase dhaS/Squalene‑‑hopene cyclase
Reads supporting (aligned to +/- strand): ref base A (0/0); new base C (31/35); total (31/35)

GGACGAGAAATGGGATCATATGCCTTGGATAATTACACAGAAGTCAAAAGTGTATGGGTAAACCTTGAAGACTAACATGTATGTTTAAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTAAAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGCACACTTCAGGAGAAAGTGAGGCGTTTTCAAAAGAAAACCATTACCGAGTTAAGAGACAGGCAAAATGCTGATGGTTCATGGACATT  >  CP006881/2054248‑2054514

ggACGAGAAATGGGATCATATGCCTTGGATAATTACACAGAAGTCAAAAGTGTATGGGTAAACCTTGAAGACTAACATGTATGTTTAAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTacaa                                                                                                                                    <  6:134233/137‑1 (MQ=255)

 gACGAGAAATGGGATCATATGCCTTGGATAATTACACAGAAGTCAAAAGTGTATGGGTAAACCTTGAAGACTAACATGTATGTTTAAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAgcc                                                                                                                                 >  8:114744/1‑137 (MQ=255)

 gACGAGAAATGGGATCATATGCCTTGGATAATTACACAGAAGTCAAAAGTGTATGGGTAAACCTTGAAGACTAACATGTATGTTTAAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGAc                                                                                                                                 >  3:279638/1‑139 (MQ=255)

  aCGAGATATGGGATCATATGCCTTGGATTATTACACAGAAGTCAAAAGTGTATGGGTAAAACTTGAAGTCTTACATGTATGTTTAAAAAACTGATGCCTGGCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACg                                                                                                                                <  3:281234/139‑1 (MQ=255)

  aCGAGAAATGGGATCATATGCCTTGGATAATTACACAGAAGTCAAAAGTGTATGGGTAAACCTTGAAGACTAACATGTATGTTTAAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACg                                                                                                                                <  1:241215/139‑1 (MQ=255)

    gagaAATTGGATCATATGCCTTCGATAATTACACAGAAGTCAAAAGTGTATGGGTAAACCTTGAAGACTAACATGTATGTTTAAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCt                                                                                                                              <  5:229378/139‑1 (MQ=255)

    gagaAATGGGATCATATGCCTTGGATAATTACACAGAAGTCAAAAGTGTATGGGTAAACCTTGAAGACTAACATGTATGTTTAAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCt                                                                                                                              <  4:108260/139‑1 (MQ=255)

     agaAATGGGATCATATGCCTTGGATAATTACACAGAAGTCAAAAGTGTATGGGTAAACCTTGAAGACTAACATGTATGTTTAAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCt                                                                                                                              >  1:192598/1‑138 (MQ=255)

     agaAATGGGATCATATGCCTTGGATAATTACACAGAAGTCAAAAGTGTATGGGTAAACCTTGAAGACTAACATGTATGTTTAAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTg                                                                                                                             <  7:108512/139‑1 (MQ=255)

     agaAATGGGATCATATGCCTTGGATAATTACACAGAAGTCAAAAGTGTATAGGTAAACCTTGAAGACTAACATGTATGTTTAAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTg                                                                                                                             <  2:123195/139‑1 (MQ=255)

             gATCATATGCCTTGGATAATTACACAGAAGTCAAAAGTGTATGGGTAAACCTTGAAGACTAACATGTATGTTTAAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAatatata                                                                                                                     <  2:243891/139‑1 (MQ=255)

               tCATATGCCTTGGATAATTACACAGAAGTCAAAAGTGTATGGGTAAACCTTGAAGACTAACATGTATGTTTAAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATg                                                                                                                   <  6:162760/139‑1 (MQ=255)

               tCATATGCCTTGGATAATTACACAGAAGTCAAAAGTGTATGGGTAAACCTTGAAGACTAACATGTATGTTTAAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATg                                                                                                                   <  6:273957/139‑1 (MQ=255)

                 atatGCCTTGGATAATTACACAGAAGTCAAAAGTGTATGGGTAAACCTTGAAGACTAACATGTATGTTTAAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCt                                                                                                                 >  5:201575/1‑139 (MQ=255)

                 atatGCCTTGGATAATTACACAGAAGTCAAAAGTGTATGGGTAAACCTTGAAGACTAACATGTATGTTTAAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCt                                                                                                                 >  2:34838/1‑139 (MQ=255)

                       cTTGGATAATTACACAGAAGTCAAAAGTGTATGGGTAAACCTTGAAGACTAACATGTATGTTTAAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGaa                                                                                                           <  6:201575/139‑1 (MQ=255)

                           gATAATTACACAGAAGTCAAAAGTGTATGGGTAAACCTTGAAGACTAACATGTATGTTTAAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGa                                                                                                        <  2:198433/138‑1 (MQ=255)

                           gATAATTACACAGAAGTCAAAAGTGTATGGGTAAACCATGAAGACTAACATGTATGTTTAAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGCCACTACAAGACGCTGAATATATATGCTTCTGAAGTAg                                                                                                       >  6:84210/1‑139 (MQ=255)

                               aTTACACAGAAGTCAAAAGTGTATGGGTAAACCTTGAAGACTAACATGTATGTTTAAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGa                                                                                                   <  1:34838/139‑1 (MQ=255)

                                ttACACAGAAGTCAAAAGTGTATGGGTAAACCTTGAAGACTAACATGTATGTTTAAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTg                                                                                                                             <  3:156445/112‑1 (MQ=255)

                                ttACACAGAAGTCAAAAGTGTATGGGTAAACCTTGAAGACTAACATGTATGTTTAAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTg                                                                                                                             >  4:156445/1‑112 (MQ=255)

                                ttACACAGAAGTCAAAAGTGTATGGGTAAACCTTGAAGACTAACATGTATGTTTAAAAAACTGCTCCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGCCGCTGAATATATATGGTTCTGAAGGAGTTGAg                                                                                                  >  7:154007/1‑139 (MQ=255)

                                  acacAGAAGTCAAAAGTGTATGGGTAAACCTTGAAGACTAACATGTATGTTTAAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGc                                                                                                 <  6:285401/138‑1 (MQ=255)

                                     caGAAGTCAAAAGTGTATGGGTAAACCTTGAAGACTAACATGTATGTTTAAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTg                                                                                                             <  6:295585/123‑1 (MQ=255)

                                     caGAAGTCAAAAGTGTATGGGTAAACCTTGAAGACTAACATGTATGTTTAAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTg                                                                                                             >  5:295585/1‑123 (MQ=255)

                                     caGAAGTCAAAAGTGTATGGGTAAACCTTGAAGACTAACATGTATGTTTAAAAAACTGCTGCCAGCCAGCAGTGTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTACAGAAGGAGTTGAGCGTGa                                                                                             >  2:45986/1‑139 (MQ=255)

                                      aGAAGTCAAAAGTGTATGGGTAAACCTTGAAGACTAACATGTATGTTTAAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGAt                                                                                            >  8:94426/1‑139 (MQ=255)

                                        aaGTCAAAAGTGTATGGGTAAACCTTGAAGACTAACATGTATGTTTAAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATgg                                                                                          >  4:13727/1‑139 (MQ=255)

                                         aGTCAAAAGTGTATGGGTAAACCTTGAAGACTAACATGTATGTTTAAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATggg                                                                                         <  8:60145/139‑1 (MQ=255)

                                          gTCAAAAGTGTATGGGTAAACCTTGAAGACTAACATGTATGTTTAAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATggg                                                                                         >  8:156074/1‑138 (MQ=255)

                                           tCAAAAGTTTATGGGTAAACCTTGAAGACTAACATGTATGGTTAAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGca                                                                                       <  4:74430/139‑1 (MQ=255)

                                           tCAAAAGTGTATGGGTAAACCTTGAAGACTAACATGTATGTTTAAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTGTGAAGGAGTTGAGCGTGATGGGca                                                                                       <  5:84210/139‑1 (MQ=255)

                                            cAAAATTGTATGTTTAAACATTGAAGAATAACATGTATGTTTAAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTATGTAATGGCAGTACAATACGCTGAATATATATGCTTATGAATGAGTTGATCGTGATGGGca                                                                                       <  2:260762/138‑1 (MQ=255)

                                            cAAAAGTGTATGGGTAAACCTTGAAGACTAACATGTATGTTTAAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGTAGGAGTTGAGCGTGATGGGca                                                                                       <  4:230558/138‑1 (MQ=255)

                                                    tATGGGTAAACCTTGAAGACTAACATGTATGTTTAAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAatatata                                                                                                                     <  7:79447/100‑1 (MQ=255)

                                                    tATGGGTAAACCTTGAAGACTAACATGTATGTTTAAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAatatata                                                                                                                     >  8:79447/1‑100 (MQ=255)

                                                    tATGGGTAAACCTTGAAGACTAACATGTATGTTTAAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGCACACTTCAg                                                                               >  5:292444/1‑138 (MQ=255)

                                                       gggTAAACCTTGAAGACTAACATGTATGTTTAAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATggg                                                                                         >  7:46834/1‑125 (MQ=255)

                                                       gggTAAACCTTGAAGACTAACATGTATGTTTAAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATggg                                                                                         <  8:46834/125‑1 (MQ=255)

                                                       gggTAAACCTTGAAGACTAACATGTATGTTTAAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGCACACTTCAGgag                                                                            <  8:215103/138‑1 (MQ=255)

                                                         gTAAACCTTGAAGACTAACATGTATGTTTAAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGCACACTTCAGgaga                                                                           >  2:212395/1‑137 (MQ=255)

                                                            aaCCTTGAAGACTAACATGTATGTTTAAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGCACACTTCAGGAGAAAGt                                                                       >  1:97759/1‑138 (MQ=255)

                                                                   aaGACTAACATGTATGTTTAAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGCACACTTCAGGAGAAAGTGAGGCGtt                                                               >  6:172041/1‑139 (MQ=255)

                                                                   aaGACTAACATGTATGTTTAAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGCACACTTCAGGAGAAAGTGAGGCGtt                                                               >  5:273446/1‑139 (MQ=255)

                                                                        tAACATGTATGTTTAAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTg                                                                                              >  4:207188/1‑103 (MQ=255)

                                                                        tAACATGTATGTTTAAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTg                                                                                              <  3:207188/103‑1 (MQ=255)

                                                                        tAACATGTATGTTTAAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGCACACTTCAGGAGAAAGTGAGGCGTTTTCa                                                           >  5:68180/1‑138 (MQ=255)

                                                                             tgtatgtTTAAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGCACACTTCAGGAGAAAGTGAGGCGTTTTCAAAAGaa                                                     <  7:94426/139‑1 (MQ=255)

                                                                               tatgtTTAAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTg                                                                                                                             >  1:260940/1‑65 (MQ=255)

                                                                               tatgtTTAAAAAACTGCTGCCTGCAAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTg                                                                                                                             <  2:260940/65‑1 (MQ=255)

                                                                                atgtTTAAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGCACACTTCAGGAGAAAGTGAGGCGTTTTCAAAAGAAAAc                                                  >  3:18638/1‑139 (MQ=255)

                                                                                 tgtTTAAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGCACACTTCAGGAGAAAGTGAGGCGTTTTCAAAAGAAAAc                                                  >  5:13568/1‑138 (MQ=255)

                                                                                  gtTTAAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGCACACTTCAGGAGAAAGTGAGGCGTTTTCAAAAGAAAACCa                                                >  5:41953/1‑139 (MQ=255)

                                                                                    ttAAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGCACACTTCAGGAGAAAGTGAGGCGTTTTCAAAAGAAAACCAt                                               >  5:176958/1‑138 (MQ=255)

                                                                                      aaaaaaCTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGCACACTTCAGGAGAAAGTGAGGCGTTTTCAAAAGAAAACCATTAc                                            >  5:91738/1‑139 (MQ=255)

                                                                                       aaaaaCTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGCACACTTCAGGAGAAAGTGAGGCGTTTTCAAAAGAAAACCATTAcc                                           <  5:196038/139‑1 (MQ=255)

                                                                                       aaaaaCTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGCACACTTCAGGAGAAAGTGAGGCGTTTTCAAAAGAAAACCATTAc                                            <  6:273446/138‑1 (MQ=255)

                                                                                       aaaaaCTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGCACACTTCAGGAGAAAGTGAGGCGTTTTCAAAAGAAAACCATTAc                                            <  6:68180/138‑1 (MQ=255)

                                                                                            ctgctgCCTGCCAGCAGTTTTTTTCTTTCTGTAATGCCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGCACACTTCAGGAGAAAGTGAGGCGTTTTCAAAAGAAAACCATTACCGAGtt                                      <  6:91738/139‑1 (MQ=255)

                                                                                             tgctgcCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGCACACTTCAGGAGAAAGTGAGGCGTTTTCAAAAGAAAACCATTACCGAGtt                                      >  6:237983/1‑138 (MQ=255)

                                                                                                  cctgccAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGCACACTTCAGGAGAAAGTGAGGCGTTTTCAAAAGAAAACCATTACCGAGTTAAgaga                                <  2:192598/139‑1 (MQ=255)

                                                                                                   ctgccAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGCACACTTCAGGAGAAAGTGAGGCGTTTTCAAAAGAAAACCATTACCGAGTTAAGAGAc                               <  5:131827/139‑1 (MQ=255)

                                                                                                                 tttttttcTGTAATTGCAGTACAAGACGCTGAATATATATGCTTGTGATGGAGTTGAGCTTGATGGGCACACTTCAGGAGAAAGTGAGTCGTTTTCAAAAGAAAACCATTACCGAGTTAATAGACAGGCAAAATGCTg                  <  5:172041/138‑1 (MQ=255)

                                                                                                                       tctGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGCACACTTCAGGAGAAAGTGAGGCGTTTTCAAAAGAAAACCATTACCGAGTTAAGAGACAGTCAAAATGCTGATGGtt            >  5:267282/1‑138 (MQ=255)

                                                                                                                           tAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGCACACTTCAGGAGAAAGTGAGGCGTTTTCAAAAGAAAACCATTACCGAGTTAAGAGACAGGCAAAATGCTGATGGTTCAt         <  3:212655/137‑1 (MQ=255)

                                                                                                                           tAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGCACACTTCAGGAGAAAGTGAGGCGTTTTCAAAAGAAAACCATTACCGAGTTAAGAGACAGGCAAAATGCTGATGGTTCAt         <  6:176958/137‑1 (MQ=255)

                                                                                                                                gCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGCACACTTCAGGAGAAAGTGAGGCGTTTTCAAAAGAAAACCATTACCGAGTTAAGAGACAGGCAAAATGCTGATGGTTCATGGACAtt  >  5:205591/1‑139 (MQ=255)

GGACGAGAAATGGGATCATATGCCTTGGATAATTACACAGAAGTCAAAAGTGTATGGGTAAACCTTGAAGACTAACATGTATGTTTAAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTAAAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGCACACTTCAGGAGAAAGTGAGGCGTTTTCAAAAGAAAACCATTACCGAGTTAAGAGACAGGCAAAATGCTGATGGTTCATGGACATT  >  CP006881/2054248‑2054514

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 14 ≤` `ATCG/ATCG` `< 15 ≤` `ATCG/ATCG` `< 32 ≤` `ATCG/ATCG` `< 36 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`

GATK/CNVnator alignment

N/A