Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A11 F58 I0 R3
|
223 |
82.2 |
2922920 |
95.2% |
2782619 |
126.5 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
CP006881 |
2,054,382 |
A→C |
100% |
intergenic (+60/‑41) |
U712_10180 → / → U712_10185 |
Putative aldehyde dehydrogenase dhaS/Squalene‑‑hopene cyclase |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP006881 | 2,054,382 | 0 | A | C | 97.9%
| 344.6
/ ‑2.4
| 96 | intergenic (+60/‑41) | U712_10180/U712_10185 | Putative aldehyde dehydrogenase dhaS/Squalene‑‑hopene cyclase |
| Reads supporting (aligned to +/- strand): ref base A (1/1); new base C (45/49); total (46/50) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 8.66e-01 |
| Rejected as polymorphism: E-value score below prediction cutoff. |
| Rejected as polymorphism: Frequency below/above cutoff threshold. |
| Rejected as polymorphism: Variant not supported by required number of reads on each strand. |
GACGAGAAATGGGATCATATGCCTTGGATAATTACACAGAAGTCAAAAGTGTATGGGTAAACCTTGAAGACTAACATGTATGTTT‑AAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTAAAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGCACACTTCAGGAGAAAGTGAGGCGTTTTCAAAAGAAAACCATTACCGAGTTAAGAGACAGGCAAAATGCTGATGGTTCATGGACATTTTG > CP006881/2054249‑2054517
|
gACGAGAAATGGGATCATATGCCTTGGATAATTACACAGAAGTCAAAAGTGTATGGGTAAACCTTGAAGACTAACATGTATGTTT‑AAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGAc > 8:345307/1‑139 (MQ=255)
gACGAGAAATGGGATCATATGCCTTGGATAATTACACAGAAGTCAAAAGTGTATGGGTAAACCTTGAAGACTAACATGTATGTTT‑AAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGAc > 2:240388/1‑139 (MQ=255)
aCGAGAAATGGGATCATATGCCTTGGATAATTACACAGAAGTCAAAAGTGTATGGGTAAACCTTGAAGACTAACATGTATGTTT‑AAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACg < 5:91638/139‑1 (MQ=255)
aCGAGAAATGGGATCATATGCCTTGGATAATTACACAGAAGTCAAAAGTGTATGGGTAAACCTTGAAGACTAACATGTATGTTT‑AAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACg < 2:311823/139‑1 (MQ=255)
gagaAATGGGATCATATGCCTTGGATAATTACACAGAAGTCAAAAGTGTATGGGTAAACCTTGAAGACTAACATGTATGTTT‑AAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCt < 7:144250/139‑1 (MQ=255)
gagaAATGGGATCATATGACTTTGATAATTACACAGAAGTCTAAAGTGTATGGGTAAACCTTGTAGACTATCATGTATGTTT‑ATAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCt < 7:309986/139‑1 (MQ=255)
agaAATGGGATCATATGCCTTGGATAATTACACAGAAGTCAAAAGTGTATGGGTAAACCTTGAAGACTAACATGTATGTTT‑AAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCt > 8:144250/1‑138 (MQ=255)
agaAATGGGATCATATGCCTTGGATAATTACACAGAAGTCAAAAGTGTATGGGTAAACCTTGAAGACTAACATGTATGTTT‑AAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTg < 3:341720/139‑1 (MQ=255)
agaAATGGGATCATATGCCTTGGATAATTACACAGAAGTCAAAAGTGTATGGGTAAACCTTGAAGACTAACATGTATGTTT‑AAAAAACTGCTGCCTGCCAGCAGTTTTTTTATTTCTGTAATGGCAGTAAAAGACGCt > 4:309492/1‑138 (MQ=255)
gATCATATGCCTTGGATAATTACACAGAAGTCAAAAGTGTATGGGTAAACCTTGAAGACTAACATGTATGTTT‑AAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAatatata < 2:19742/139‑1 (MQ=255)
aTCATATGCCTTGGATAATTACACAGAAGTCAAAAGTGTATGGGTAAACCTTGAAGACTAACATGTATGTTT‑AAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCt < 8:273349/129‑1 (MQ=255)
aTCATATGCCTTGGATAATTACACAGAAGTCAAAAGTGTATGGGTAAACCTTGAAGACTAACATGTATGTTT‑AAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCt > 7:273349/1‑129 (MQ=255)
cATATGCCTTGGATAATTACACAGAAGTCAAAAGTGTATGGGTAAACCTTGAAGACTAACATGTATGTTT‑AAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCt < 6:179559/127‑1 (MQ=255)
cATATGCCTTGGATAATTACACAGAAGTCAAAAGTGTATGGGTAAACCTTGAAGACTAACATGTATGTTT‑AAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCt > 5:179559/1‑127 (MQ=255)
atatGCCTAGGATAATTACACAGAAGTCAAAAGTGTATGGGTAAACCTTGAAGACTAACATGTATGTTT‑AAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACTCTGAATATATATGc < 6:63683/138‑1 (MQ=255)
cTTGGATAATTACACAGAAGTCAAAAGTGTATGGGTAAACCTTGAAGACTAACATGTATGTTT‑AAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTg > 6:278904/1‑137 (MQ=255)
gATAATTACACAGAAGTCAAAAGTGTATGGGTAAACCTTGAAGACTAACATGTATGTTT‑AAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCt > 8:279991/1‑116 (MQ=255)
gATAATTACACAGAAGTCAAAAGTGTATGGGTAAACCTTGAAGACTAACATGTATGTTT‑AAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCt < 7:279991/116‑1 (MQ=255)
gATAATTACACAGAAGTCAAAAGTGTATGGGTAAACCTTGAAGACTAACATGTATGTTT‑AAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAg > 7:325333/1‑139 (MQ=255)
ttACACAGAAGTCAAAAGTGTATGGGTAAACCTTGAAGACTAACATGTATGTTT‑AAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACg > 3:309783/1‑109 (MQ=255)
ttACACAGAAGTCAAAAGTGTATGGGTAAACCTTGAAGACTAACATGTATGTTT‑AAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACg < 6:92318/109‑1 (MQ=255)
ttACACAGAAGTCAAAAGTGTATGGGTAAACCTTGAAGACTAACATGTATGTTT‑AAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACg < 4:309783/109‑1 (MQ=255)
ttACACAGAAGTCAAAAGTGTATGGGTAAACCTTGAAGACTAACATGTATGTTT‑AAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACg > 5:92318/1‑109 (MQ=255)
ttACACAGAAGTCAAAAGTGTATGGGTAAACCTTGAAGACTAACATGTATGTTT‑AAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGa < 2:289837/113‑1 (MQ=255)
ttACACAGAAGTCAAAAGTGTATGGGTAAACCTTGAAGACTAACATGTATGTTT‑AAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGa > 1:289837/1‑113 (MQ=255)
ttACACAGAAGTCAAAAGTGTATGGGTAAACCTTGAAGACTAACATGTATGTTT‑AAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAg > 6:134792/1‑139 (MQ=255)
caGAAGTCAAAAGTGTATGGGTAAACCTTGAAGACTAACATGTATGTTT‑AAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGa > 4:311634/1‑139 (MQ=255)
aaGTCAAAAGTGTATGGGTAAACCTTGAAGACTAACATGTATGTTT‑AAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCt < 5:95689/103‑1 (MQ=255)
aaGTCAAAAGTGTATGGGTAAACCTTGAAGACTAACATGTATGTTT‑AAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCt > 6:95689/1‑103 (MQ=255)
aaGTCAAAAGTGTATGGGTAAACCTTGAAGACTAACATGTATGTTT‑AAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATgg > 6:145064/1‑139 (MQ=255)
aGTCAAAAGTGTATGGGTAAACCTTGAAGACTAACATGTATGTTT‑AAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATggg < 7:345307/139‑1 (MQ=255)
tCAAAAGTGTTTGGTTAAACCTTGAAGACTAACATGTATTTTT‑AAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGca < 6:163709/139‑1 (MQ=255)
tCAAAAGTGTATGGGTAAACCTTGAAGACTAACATGTATGTTT‑AAAAAACTGCTGCCTGCCAGCATTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGca < 3:222326/139‑1 (MQ=255)
tCAAAAGTGTATGGGTAAACCTTGAAGACTAACATGTATGTTT‑AAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGca < 3:311634/139‑1 (MQ=255)
tCAAAAGTGTATGGGTAAACCTTGAAGACTAACATGTATGTTT‑AAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGca < 5:134792/139‑1 (MQ=255)
tCAAAAGTGTATGGGTAAACCTTGAAGACTAACATGTATGTTT‑AAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGca < 8:325333/139‑1 (MQ=255)
aGTGTATGGGTAAACCTTGAAGACTAACATGTATGTTT‑AAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGCACACtt < 8:82454/139‑1 (MQ=255)
tgtATGGGTAAACCTTGAAGACTAACATGTATGTTT‑AAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACg > 5:341772/1‑91 (MQ=255)
tgtATGGGTAAACCTTGAAGACTAACATGTATGTTT‑AAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACg < 6:341772/91‑1 (MQ=255)
tgtATGGGTAAACCTTGAAGACTAACATGTATGTTT‑AAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCt < 3:130487/93‑1 (MQ=255)
tgtATGGGTAAACCTTGAAGACTAACATGTATGTTT‑AAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCt > 4:130487/1‑93 (MQ=255)
tgtATGGGTAAACCTTGAAGACTAACATGTATGTTT‑AAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGCACACtt > 7:198762/1‑137 (MQ=255)
tgtATGGGTAAACCTTGAAGACTAACATGTATGTTT‑AAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGCACACtt > 5:24393/1‑137 (MQ=255)
tgtATGGGTAAACCTTGAAGACTAACATGTATGTTT‑AAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGCACACtt > 8:171474/1‑137 (MQ=255)
tATGGGTACACCTGGAAGACTAACATGTATGTTT‑AAAAAACTGATGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGTCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCTTGATGGGCACACTTCAg > 5:95291/1‑138 (MQ=255)
tATGGGTAAACCTTGAAGACTAACATGTATGTTT‑AAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGCACACTTCAg > 5:133933/1‑138 (MQ=255)
tATGGGTAAACCTTGAAGACTAACATGTATGTTT‑AAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGCACACTTCAg > 6:272079/1‑138 (MQ=255)
tATGGGTAAACCTTGAAGACTAACATGTATGTTT‑AAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGCACACTTCAg > 3:146517/1‑138 (MQ=255)
tGGGTAAACCTTGAAGACTAACATGTATGTTT‑AAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGCACACTTCAGgag < 1:240388/139‑1 (MQ=255)
tGGGTAAACATTGAAGACTAACATGTATGTTT‑AAAAAACTGCTTCATGCCATCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGAGGGGCACACTTCAGgag < 4:306840/139‑1 (MQ=255)
ggTAAAACTTGTAGACTAACATGTATGTTTAAAAAAACTGCTGCCTGCCAGATGTTTTTTTCTTTATGTAATGGAATTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGCACACTTCAGgag < 2:59196/138‑1 (MQ=255)
aaCCTTGAAGACTAACATGTATGTTT‑AAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGCACACTTCAGGAGAAAGt > 3:169006/1‑138 (MQ=255)
aaCCTTGAAGACTAACATGTATGTTT‑AAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGCACACTTCAGGAGAAAGt > 4:25692/1‑138 (MQ=255)
aaCCTTGAAGACTAACATGTATGTTT‑AAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGCACACTTCAGGAGAAAGt > 3:78129/1‑138 (MQ=255)
aaCCTTGAAGACTAACATGTATGTTT‑AAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGAGGGGCACACTTCAGGAGAAAGt > 1:274953/1‑138 (MQ=255)
aaGACTAACATGTATGTTT‑AAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAat < 7:320849/80‑1 (MQ=255)
aaGACTAACATGTATGTTT‑AAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGCACACTTCAGGAGAAAGTGAGGCGtt > 2:126093/1‑139 (MQ=255)
aaGAATAACATGTATGTTT‑AAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAat > 8:320849/1‑80 (MQ=255)
tAACATGTATGTTT‑AAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGCACACTTCAGGAGAAAGTGAGGCGTTTTCa > 7:57237/1‑138 (MQ=255)
tAACATGTATGTTT‑AAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGCACACTTCAGGAGAAAGTGAGGCGTTTTCa > 3:295688/1‑138 (MQ=255)
tgtatgtTT‑AAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGCACACTTCAGGAGAAAGTGAGGCGTTTTCAAAAGaa < 5:272079/139‑1 (MQ=255)
tatgtTT‑AAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTTAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGca < 5:292368/103‑1 (MQ=255)
tatgtTT‑AAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGca > 6:292368/1‑103 (MQ=255)
atgtTT‑AAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTTAGCGTGATGGGCACACTTCAGGAGAAAGTGAGGCGTTTTCAAAAGAAAAc > 8:282863/1‑139 (MQ=255)
atgtTT‑AAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGCACACTTCAGGAGAAAGTGAGGCGTTTTCAAAAGAAAAc > 7:209690/1‑139 (MQ=255)
atgtTT‑AAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGCACACTTCAGGAGAAAGTGAGGCGTGTTCAAAAGAAAAc > 3:22645/1‑139 (MQ=255)
ttt‑AAAAAACTGCTGCCTGCAAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGCACACTTCAGGAGAAAGTGAGGCGTTTTCAAAAGAAAACCa < 8:342925/138‑1 (MQ=255)
aaaaaaCTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTg > 1:352248/1‑58 (MQ=255)
aaaaaaCTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTg < 2:352248/58‑1 (MQ=255)
aaaaaaCTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGca > 5:251015/1‑96 (MQ=255)
aaaaaaCTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGca < 6:251015/96‑1 (MQ=255)
aaaaaaCTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGCACACTTCAGGAGAAAGTGAGGCGTTTTCAAAAGAAAACCATTAc > 2:7908/1‑139 (MQ=255)
aaaaaaCTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGCACACTTCAGGAGAAAGTGAGGCGTTTTCAAAAGAAAACCATTAc > 4:273859/1‑139 (MQ=255)
aaaaaCTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGCACACTTCAGGAGAAAGTGAGGCGTTTTCAAAAGAAAACCATTAcc < 6:146171/139‑1 (MQ=255)
aaaaaCTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGCACACTTCAGGAGAAAGTGAGGCGTTTTCAAAAGAAAACCATTAcc < 8:198762/139‑1 (MQ=255)
aaaaaCTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGCACACTTCAGGAGAAAGTGAGGCGTTTTCAAAAGAAAACCATTAc < 6:133933/138‑1 (MQ=255)
aaaaaCTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGCACACTTCAGGAGAAAGTGAGGCGTTTTCAAAAGAAAACCATTAc < 8:57237/138‑1 (MQ=255)
aaaaaCTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGCACACTTCAGGAGAAAGTGAGGCGTTTTCAAAAGAAAACCATTAc < 5:278904/138‑1 (MQ=255)
gctgcCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGCACACTTCAGGAGAAAGTGAGGCGTTTTCAAAAGAAAACCATTACCGAGTTa > 2:318654/1‑138 (MQ=255)
cctgccAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGCACACTTCAGGAGAAAGTGAGGCGTTTTCAAAAGAAAACCATTACCGAGTTAAgaga < 5:28156/139‑1 (MQ=255)
ctgccAGCAGTTTTTTTCTTTCTGTAATGGCAGTACTAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGCACAGTTCAGGAGAAAGTGAGGCGTTTTCAAAAGAAAACCATTACCGAGTTAAGAGAc < 8:157278/139‑1 (MQ=255)
ctgccAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGCACACTTCAGGAGAAAGTGAGGCGTTTTCAAAAGAAAACCATTACCGAGTTAAGAGAc < 4:78129/139‑1 (MQ=255)
tgccAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTg < 7:140195/44‑1 (MQ=255)
tgccAGCAGTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTg > 8:140195/1‑44 (MQ=255)
agcagTTTTTTTCTTTCTGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGCACACTTCAGGAGAAAGTGAGGCGTTTTCAAAAGAAAACCATTACCGAGTTAAGAGACAGGCa < 2:329150/139‑1 (MQ=255)
agcagTTTTTTTCTTTCTGTAATGGCAGTAAAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGCACACTTCAGGAGAAAGTGAGGCGTTTTCAAAAGAAAACCATTACCGAGTTAAGAGACAGGCa < 3:309492/139‑1 (MQ=255)
tctttttTTAATGGAAGTACAAGAAGCTGAATATTTATGCTTCTGAAGTATTTGAGCGTTATGGTCACACTTCAGGAGACATTGATGCGTTTTCAAAAGAAAACCATTACCGAGTTAAGAGACAGGCAAAATGCTGAt < 6:95291/138‑1 (MQ=255)
tctttctGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGCACACTTCAGGAGAAAGTGAGGCGTTTTCAAAAGAAAACCATTACCGAGTTAAGAGACAGGCAAAATGCTGAt < 6:24393/138‑1 (MQ=255)
tctGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGcac > 2:96760/1‑64 (MQ=255)
tctGTAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGcac < 1:96760/64‑1 (MQ=255)
tAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGCACACTTCAGGAGAAAGTGAGGCGTTTTCAAAAGAAAACCATTACCGAGTTAAGAGACAGGCAAACTGCTGATGGTTCATgg < 3:273859/139‑1 (MQ=255)
tAATGGCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGCACACTTCAGGAGAAAGTGAGGCGTTTTCAAAAGAAAACCATTACCGAGTTAAGAGACAGGCAAAATGCTGATGGTTCAt < 1:7908/137‑1 (MQ=255)
gCAGTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGCACACTTCAGGAGAAAGTGAGGCGTTTTCAAAAGAAAACCATTACCGAGTTAAGAGACAGGCAAAATGCTGATGGTTCATGGACAtt < 1:318654/139‑1 (MQ=255)
gTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGCACACTTCAGGAGAAAGTGAGGc < 2:325313/72‑1 (MQ=255)
gTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGCACACTTCAGGAGAAAGTGAGGc > 1:325313/1‑72 (MQ=255)
gTACAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGCACACTTCAGGAGAAAGTGAGGCGTTATCATAAGAAAACCATTACCGAGTTAAGAGACAGGCAAAATGCTGATGGTTCATGGACATTTTg > 4:298245/1‑139 (MQ=255)
|
GACGAGAAATGGGATCATATGCCTTGGATAATTACACAGAAGTCAAAAGTGTATGGGTAAACCTTGAAGACTAACATGTATGTTT‑AAAAAACTGCTGCCTGCCAGCAGTTTTTTTCTTTCTGTAATGGCAGTAAAAGACGCTGAATATATATGCTTCTGAAGGAGTTGAGCGTGATGGGCACACTTCAGGAGAAAGTGAGGCGTTTTCAAAAGAAAACCATTACCGAGTTAAGAGACAGGCAAAATGCTGATGGTTCATGGACATTTTG > CP006881/2054249‑2054517
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
