Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A10 F54 I0 R2 227 88.8 3424874 95.5% 3270754 127.2

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP006881 2,071,605 G→T 23.4% intergenic (‑232/‑43) U712_10240 ← / → U712_10245 Uncharacterized protein yojJ/putative multidrug resistance protein norM

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0068812,071,6050GT23.4% 119.7 / 3.0 63intergenic (‑232/‑43)U712_10240/U712_10245Uncharacterized protein yojJ/putative multidrug resistance protein norM
Reads supporting (aligned to +/- strand):  ref base G (29/17);  new base T (2/13);  total (33/30)
Fisher's exact test for biased strand distribution p-value = 9.73e-04
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

TCGAAAGAATCATTCAGTATATTTGCACCTTTTTAGGCGTGATTTCGCTTTCTTTTATTTATGCCCAAATGTTTAGAAAAACGAAACCGACAAAAAAAGAATAGGCCCGGCGTTCATTGCTTTTTATACATAAAATGTT‑ATAATTTCTCTCGTTATGAAAAAGAAACGGAGATCAATG‑TATGAAAGAAACTCAAAACGCCCGGGAAAAAATCAAACAGCTCTTGCACATTTTAATACCGATATTCATTACCCAAGCGGGGCTTTCTCTGATCA  >  CP006881/2071469‑2071741
                                                                                                                                        |                                                                                                                                          
tCGAAAGAATCATTCAGTATATTTGCACCTTTTTAGGCGTGATTTCGCTTTCTTTTATTTATGCCCAAATGTTTAGAAAAACGAAACCGACAAAAAAAGAATAGGCCCGGCGTTCATTGCTTTTTATACATAAAATGtt                                                                                                                                          <  8:61097/139‑1 (MQ=255)
  gAAAGAATCATTCAGTATATTTGCACCTTTTTAGGCGTGATTTCGCTTTCTTTTATTTATGCCCAAATGTTTAGAAAAACGAAACCGACAAAAAAAGAATAGGCCCGGCGTTCATTGCTTTTTATACATAAAATGTt‑at                                                                                                                                       <  7:418326/139‑1 (MQ=255)
  gAAAGAATCATTCAGTATATTTGCACCTTTTTAGGCGTGATTTCGCTTTCTTTTATTTATGCCCAAATGTTTAGAAAAACGAAACCGACAAAAAAAGAATAGGCCCGGCGTTCATTGCTTTTTATACATAAAATGTt‑at                                                                                                                                       <  8:327825/139‑1 (MQ=255)
  gAAAGAATCATTCAGTATATTTGCACCTTTTTAGGCGTGATTTCGCTTTCTTTTATTTATGCCCAAATGTTTAGAAAAACGAAACCGACAAAAAAAGAATAGGCCCGGCGTTCATTGCTTTTTATACATAAAATGTt‑a                                                                                                                                        >  7:110006/1‑138 (MQ=255)
                      ttGCACCTTTTTAGGCGTGATTTCGCTTTCTTTTATTTATGCCCAAATGTTTAGAAAAACGAAACCGACAAAAAAAGAATAGGCCCGGCGTTCATTTCTTTTTATACATAAAATGGT‑ATAATTTCTCTAGTTATTaaa                                                                                                                    >  7:203074/1‑138 (MQ=255)
                      ttGCACCTTTTTAGGCGTGATTTCGCTTTCTTTTATTTATGCCCAAATGTTTAGAAAAACGAAACCGACAAAAAAAGAATAGGCCCGGCGTTCATTGCTTTTTATACATAAAATTTT‑ATAATTTCTCTCGTTATGaaa                                                                                                                    >  7:146589/1‑138 (MQ=255)
                      ttGCACCTTTTTAGGCGTGATTTCGCTTTCTTTTATTTATGCCCAAATGTTTAGAAAAACGAAACCGACAAAAAAAGAATAGGCCCGGCGTTCATTGCTTTTTATACATAAAATGTT‑ATAATTTCTCTCGTTATGaaa                                                                                                                    >  1:282724/1‑138 (MQ=255)
                       tGCACCTTTTTAGGCGTGATTTCGCTTTCTTTTATTTATGCCCAAATGTTTAGAAAAACGAAACCGACAAAAAAAGAATAGGCCCGGCGTTCATTGCTTTTTATACATAAAATGTT‑ATAATTTCTCTCGTTATGaaaa                                                                                                                   <  2:76700/138‑1 (MQ=255)
                        gCACCTTTTTAGGCGTGATTTCGCTTTCTTTTATTTATGCCCAAATGTTTAGAAAAACGAAACCGACAAAAAAAGAATAGGCCCGGCGTTCATTGCTTTTTATACATAAAAAGTT‑ATAATTTCTCTCGTTATGaa                                                                                                                     >  3:78347/1‑135 (MQ=255)
                         cACCTTTTTAGGCGTGATTTCGCTTTCTTTTATTTATGCCCAAATGTTTAGAAAAACGAAACCGACAAAAAAAGAATAGGCCCGGCGTTCATTGCTTTTTATACATAAAATGTT‑ATAATTTCTCTCGTTATGaaa                                                                                                                    >  4:134517/1‑135 (MQ=255)
                           ccTTTTTAGTCTTGATTTCTCTTTTTTTTATTTATGCCAAAATGTTTATAAAAACTAAACCGACAAAAAAAGAATAGGCCCGGCGTTCATTGCTTTTTATACATAAAATGTT‑ATAATTTCTCTCGTTATTAAAAAg                                                                                                                 <  3:324841/136‑1 (MQ=255)
                           ccTTTTTAGGCGTGATTTCGCTTTCTTTTATTTATGCCCAATTGTTTATAAAAACTAAACCGACAAAAAATGATTAGGCCCGGCGTTCATTGGTTTTTATAAATAAAATGTT‑ATAATTTAGATCGTTATGAaaaaaaaa                                                                                                              >  5:110574/1‑139 (MQ=255)
                           ccTTTTTAGGCGTGATTTCGCTTTCTTTTATTTATGCCCAAATGTTTAGAAAAACGAAACCGACAAAAAAAGAATAGGCCCGGCGTTCATTGCTTTTTATACATAAAATGTT‑ATAATTTCTCTCGTTATGAAAAAGaaa                                                                                                              >  5:261413/1‑139 (MQ=255)
                           ccTTTTTAGGCGTGATTTCGCTTTCTTTTATTTATGCCCAAATGTTTAGAAAAACGAAACCGACAAAAAAAGAATAGGCCCGGCGTTCATTGCTTTTTATACATAAAATGTT‑ATAATTTCTCTCGTTATGAAAAAGaaa                                                                                                              >  6:159195/1‑139 (MQ=255)
                           ccTTTTTAGGCGTGATTTCGCTTTCTTTTATTTATGCCCAAATGTTTAGAAAAACGAAACCGACAAAAAAAGAATAGGCCCGGCGTTCATTGCTTTTTATACATAAAATGTT‑ATAATTTCTCTCGTTATGAAAAAGaaa                                                                                                              >  7:82031/1‑139 (MQ=255)
                             tttttAGGCGTGATTTCGCTTTCTTTTATTTATGCCCAAATGTTTAGAAAAACGAAACCGACAAAAAAAGAATAGGCCCGGCGTTCATTGCTTTTTATACATAAAATGTT‑ATAATTTCTCTCGTTATTAAAAAGAAACg                                                                                                            >  5:312729/1‑139 (MQ=255)
                             tttttAGGCGTGATTTCGCTTTCTTTTATTTATGCCCAAATGTTTAGAAAAACGAAACCGACAAAAAAAGAATAGGCCCGGCGTTCATTGCTTTTTATACATAAAATGTT‑ATAATTTCTCTAGTTATGAAAAAGAAACg                                                                                                            >  1:343836/1‑139 (MQ=255)
                              ttttAGGCGTGATTTCGCTTTCTTTTATTTATGCCCAAATGTTTAGAAAAACGAAACCGACAAAAAAAGAATAGGCCCGGCGTTCATTTCTTTTTATACATAAAATGTT‑ATAATTTCTCTAGTTATGAAAAAGaa                                                                                                               >  4:324841/1‑135 (MQ=255)
                              ttttAGGCGTGATTTCGCTTTCTTTTATTTATGCCCAAATGTTTAGAAAAACGAAACCGACAAAAAAAGAATAGGCCCGGCGTTCATTGCTTTTTATAAATAAAATGTT‑ATTATTTAGATAGTTATTAAAAAGAAACgg                                                                                                           >  1:158562/1‑139 (MQ=255)
                              ttttAGGCGTGATTTCGCTTTCTTTTATTTATGACCAAATGTTTAGAAAAACGAACCCGACAAAAAAAGAATAGGCCCGGCGTTGATTGCTTTTTTTACATAAAATTTT‑ATAATTTGTGTGGTTATGATAAAGAAACgg                                                                                                           >  1:391717/1‑139 (MQ=255)
                               tttAGGCGTGATTTCGCTTTCTTTTATTTATGCCCAAATGTTTAGAAAAACGAAACCGACAAAAAAAGAATAGGCCCGGCGTTCATTGCTTTTTATACATAAAATGTT‑ATAATTTCTCTCGTTATGAAAAAGAAACg                                                                                                            >  6:140390/1‑137 (MQ=255)
                                 tAGGCGTGATTTCGCTTTCTTTTATTTATGCCCAAATGTTTAGAAAAACGAAACCGACAAAAAAAGAATAGGCCCGGCGTTCATTGGTTTTTATACATAAAATGTT‑ATAATTTCTCTAGTTATGATAAAGAAACg                                                                                                            >  3:57862/1‑135 (MQ=255)
                                   ggggTGATTTCGCTTTCTTTTATTTATGCCAAAATGTTTAGAAAAACGAAACCGACAAAAAAAGAATAGGCCCGGCGTTCATTGCTTTTTATACATAAAATGTT‑ATAATTTCTCTCGTTATGAAAAAGAAACGGAGAt                                                                                                       <  2:3406/135‑1 (MQ=255)
                                    gggggATTTCGCTTTGTTTTATTTATGCCCAAATGTTTAGAAAAACGAAACCCACAAAAAAAGAATAGGCCCGGCGTTCATTGCTTTTTATACATAAAATGTT‑ATAATTTCTCTCGTTATGAAAAAGAAACGGAGATCa                                                                                                     <  6:110574/135‑1 (MQ=255)
                                    ctgttttttCGCTTTCTTTTATTTTTCACCAATTTTTAACAAAAACTAAACCTAAAAAAAAAGAATAGGCCCGGCGTTCATTGATTTTTATACATAAATTGTT‑ATAATTTCTCTCGTTATGAAAAAGAAACGGAGATCa                                                                                                     <  2:361867/133‑1 (MQ=255)
                                         aTTTCGCTTTCTTTTATTTATGCCCAAATGTTTAGAAAAACGAAACCGACAAAAAAAGAATAGGCCCGGCGTTCATTGCTTTTTATACATAAAATGTT‑ATAATTTCTCTCGTTATGAAAAAGAAACGGAGATCAATG‑Ta                                                                                               >  5:323873/1‑139 (MQ=255)
                                         aTTTCGCTTTCTTTTATTTATGCCCAAATGTTTAGAAAAACGAAACCGACAAAAAAAGAATAGGCCCGGCGTTCATTGCTTTTTATACATAAAATGTT‑ATAATTTCTCTCGTTATGAAAAAGAAACGGAGATCAATG‑Ta                                                                                               >  1:318761/1‑139 (MQ=255)
                                                 ttctttTATTTATGCCCAAATGTTTAGAAAAACGAAACCGACAAAAAAAGAATAGGCCCGGCGTTCATTGCTTTTTATACATAAAATGTT‑ATAATTTCTCTCGTTATGAAAAAGAAACGGAGATCAATG‑TATga                                                                                            >  4:394774/1‑134 (MQ=255)
                                                   ctttTATTTATGCCCAAATGTTTAGAAAAACGAAACCGACAAAAAAAGAATAGGCCCGGCGTTCATTGCTTTTTATACATAAAATGTT‑ATAATTTCTCTCGTTATGAAAAAGAAACGGAGATCAATG‑TATGAAAGAAAc                                                                                     >  8:219973/1‑139 (MQ=255)
                                                   ctttTATTTATGCCCAAATGTTTACAAAAACGAAACCGACAAAAAAAGAATAGGCCCGGCGTTCATTGCTTTTTATACATAAAATGTT‑ATAATTTCTCTCGTTATGAAAAAGAAACGGAGATCAATG‑TATgaaagaaa                                                                                      <  5:350058/138‑1 (MQ=255)
                                                     tttatttaTGCCCAAATGTTTAGAAAAACGAAACCGACAAAAAAAGAATAGGCCCGGCGTTCATTGCTTTTTATACATAAAATGTT‑ATAATTTCTCTCGTTATGAAAAATAAACGGAGATAAATG‑TATgaaagaa                                                                                       >  3:277955/1‑135 (MQ=255)
                                                              gCCCAAATGTTTAGAAAAACGAAACCGACAAAAAAAGAATAGGCCCGGCGTTCATTGCTTTTTATACATAAAATGTT‑ATAATTTCTCTCGTTATGAAAAAGAAACGGAGATCAATG‑TATGAAAGAAACTCAAAACGccc                                                                          >  8:389639/1‑139 (MQ=255)
                                                              ccccAAATGTTTAGAAAAACGAAACCGACAAAAAAAGAATAGGCCCGGCGTTCATTGGTTTTTTTAATTAAAATATT‑AAAAATTCACTCGTTATGAAAAAGAAACTGAGATAAAAT‑TATTAAAAAAACTCAAAACGccc                                                                          >  7:163760/2‑139 (MQ=255)
                                                                 cAAATGTTTAGAAAAACGAAACCGACAAAAAAAGAATAGGCCCGGCGTTCATTGCTTTTTATACATAAAATGTT‑ATAATTTCTCTCGTTATGAAAAAGAAACGGAGATCAATG‑TATGAAAGAAACTCAAAACGccc                                                                          >  3:155127/1‑136 (MQ=255)
                                                                      gTTTAGAAAAACGAAACCGACAAAAAAAGAATAGGCCCGGCGTTCATTGCTTTTTATACATAAAATGTT‑ATAATTTCTCTCGTTATGAAAAAGAAACGGAGATCAATG‑TATGAAAGAAACTCAAAACGCCCGGGa                                                                      >  4:295907/1‑135 (MQ=255)
                                                                       tttAGAAAAACGAAACCGACAAAAAAGGAATAGGCCCGGCGTTCATTGCTTTTTATACATAAAATGTT‑ATAATTTCTCTCGTTATGAAAAAGAAACGGAGATCAATG‑TATGAAAGAAACTCAAAACGCCCGGGaaaaaa                                                                 >  2:3022/1‑139 (MQ=255)
                                                                             aacacaaaaCCAAAAAAAAAAAAATCGGCCCGGCGTTCATTGTTTTTTAAAAAAAAAATTTT‑ATATTTTCTCTCGTTATCAAAACGAAACGCCGATAAATT‑TATAAAACAAACCAAAAACGCCCGGGAAAAAATCAAAc                                                           <  2:343836/133‑1 (MQ=255)
                                                                             aaacccaaaCCCACAAAAAAAGAATCGGCCCGGCGTTCATTGCTTTTAAAAAATAAATTTTT‑ATAATTTCTCTCGTTATCAAAAACAACCGGATATCAATG‑TATCAAACAAACTCAAAACGCCCGGGAAAAAATCAAAc                                                           <  7:81520/133‑1 (MQ=255)
                                                                             aaaaCGAAACCGACAAAAAAAGAATAGGCCCGGCGTTCATTGCTTTTTATACATAAAATGTT‑ATAATTTCTCTCGTTATGAAAAAGAAACGGAGATCAATG‑TATGAAAGAAACTCAAAACGCCCGGGAAAAAATCAAAc                                                           <  7:219973/139‑1 (MQ=255)
                                                                             aaaaCGAAACCCCCAAAAAACGAAACCGCCCGGCGTTCATTGCTTTTTATAAATAAAATTTT‑ATAATTTCTCTCGTTATCAAAAACAACCGTAGATCAATG‑TAGCAAAGAAACTCAACACGCCCGGGAAAAAATCAAAc                                                           <  6:74608/139‑1 (MQ=255)
                                                                             aaaaCCAAACCGACAAAAAAAGAATAGGCCCGGCGTTCATTGCTTTTTATACATAAAATGTT‑ATAATTTCTCTCGTTATGAAAAAGAAACGGAGATCAATG‑TATGAAAGAAACTCAAAACGCCCGGGAAAAAATCa                                                              <  3:182924/136‑1 (MQ=255)
                                                                                    aaCCGACAAAAAAAGAATAGGCCCGGCGTTCATTGCTTTTTATACATAAAATGTT‑ATAATTTCTCTCGTTATGAAAAAGAAACGGAGATCAATG‑TATGAAAGAAACTCAAAACGCCCGGGAAAAAATCAAACAGct                                                       >  3:7183/1‑136 (MQ=255)
                                                                                       ctccAAAAAATTAATAGCGCCTGCGTTAATTTCTTTTATTACAAAAATTGTT‑ATATTTTCTCAGTTTATGAAAAACAAACGTATAATAATG‑TATAAAATAAACCAAAAACGCCCGGGAAAAAATCAAACAGCTCTTGca                                                 <  6:282282/136‑1 (MQ=255)
                                                                                       ctaaaaaaaaaCAATCGGCCCGGCGTTCATTGCTTTTTATAAATAAAATTTT‑ATAATTTCTCTCTTTATCAAAAACAAACGGATATCAATG‑TATGAAACAAACTCAAAACGCCCGGGAAAAAATCAAACAGCTCTTGca                                                 <  8:82031/135‑1 (MQ=255)
                                                                                       cGACAAAAAAGAAATTGGCCCGGCGTTCATTGCTTTTTATAAAAAAATTTTT‑ATATTTTCTCTCGTTATTAAAAACAAACGGAGATCATTT‑TATCAATTAAACTCAAAACGCCCGGGAAAAAATCAAACAGCTCTTGca                                                 <  1:3022/139‑1 (MQ=255)
                                                                                        ccaaaaaaaaaaaaaCGCCCCGGGTTAATTTTTTTTTAAAAAAAAAATTTTAATAATTTCTCTCTTAAAAAAAAACAAAGGAACATAATTT‑TATCAAACAAACACAACACGCCCGGGAAAAAATCAAACAGCTCtt                                                    <  4:7183/133‑1 (MQ=255)
                                                                                         aCAAAAAAAGAATAGGCCCGGCGTTCATTGCTTTTTATACATAAAATGTT‑ATAATTTATCTCGTTATGAAAAAGAAACGGAGATCAATG‑TATGAAAGAAACTCAAAACGCCCGGGAAAAAATCAAACAGCTCTTGcaca                                               >  5:199431/1‑139 (MQ=255)
                                                                                               aaacactAGGCCCGGTTTTAATTTTTTTTAATAAAAAAATTTTA‑ATAATTAATTTCTTAATAAAAACAAACCGTATATAATTT‑TATTAAATAAACAAAAAACGCCCGGGAAAAAATCAAACAGCTCTTGCACAttt                                            <  4:245258/130‑1 (MQ=255)
                                                                                               aaaTAATAGGCCGGGGGTTCATTGCTTTTTATACATAAAATTTA‑ATTATTTCTCTCTTTATCAAAAACAAACTCATATAAATT‑TATCAAACAAACTAAAAACGCCCGGGAAAAAATCAAACAGCTCTTGCACATTTTaa                                         <  8:146589/139‑1 (MQ=255)
                                                                                               aaaCAATAGGCCCGGCGTTCTTTGATTTTTAAAAATAAATTTTT‑ATAATTTCTCTCGTAATGAAAACTAAACGGATATCAATG‑TATCAAAGAAACTCAACACGCCCGGGAAAAAATCAAACAGCTCTTGCACATTTTaa                                         <  8:11407/139‑1 (MQ=255)
                                                                                                  caacccgCCGGGCTTTAATTGATTTTAAAAAAAAAAATTTA‑AAAATTTCTCTCTTAATAAAAACAAACCGTACATAAATG‑AATCAAAAAACCACAAAACGCCCGGGAAAAAATCAAACAGCTCTTGCACATTTTAATAc                                      <  6:261413/133‑1 (MQ=255)
                                                                                                     ttggCCCGGTGTTCATTGTTTTATAAACTTAAATTTTT‑AATATTTTTCTCTTTTTTAAAAACAAACGTTGAT‑ATTGTTTTGAATGAAATTCACCACGCCCGGGAAAAAATCAAACAGCTCTTGCACATTTTAATAc                                      <  4:78347/134‑1 (MQ=255)
                                                                                                       ggCCCGGCTTTCATTGCTTTTAATACATAAATTTTT‑ATAATTTCTCTCGTAATCAAAAACAAACGGCCATCAATG‑TATGAAACAAACTCAAAACGCCCGGGAAAAAATCAAACAGCTCTTGCACATTTTAATACCGat                                  <  5:159195/138‑1 (MQ=255)
                                                                                                       ggCCCGGCGTTAATTCCTTTTTATACATAAAATGTT‑AAAATTTCTCTCGTTATCAAAAACAACCGGAGATCAATG‑TATCAAAGAAACTCAACACGCCCGGGAAAAAATCAAACAGCTCTTGCACATTTTAATACCGata                                 <  1:314416/139‑1 (MQ=255)
                                                                                                             gCGTTCATTGCTTTTTATACATAAAATGTT‑ATAATTTCTCTCGTTATGAAAAAGAAACGGAGATCAATG‑TATGAAAGAAACTCAAACCGCCCGGGAAAAAATCAAACAGCTCTTGCACATTTTAATACCGATATTCAt                            >  8:34272/1‑138 (MQ=255)
                                                                                                                 acATTGATTTTAAAAAAAAAAATTTA‑AAAATTTATCTCGTTATTAAAAATAAACGTACATAAATT‑TATGAAATAAAATCAACACGCCCGGGAAAAAATCAAACAGCTCTTGCACATTTTAATACCGATATTCAt                            <  4:57862/133‑1 (MQ=255)
                                                                                                                  cATTGCTTTTTATACATAAAATATT‑ATAAATTCTCTCGTTATGAAAAAAAAACGGAGATCAATG‑TATGAAATAAACTCAAACCGCCCGGGAAAAAATAAAACATCTCTTGCACATTTTAATACAGATATTCATTAccc                       >  7:322296/1‑138 (MQ=255)
                                                                                                                      gCTTTTTATACATAAAATGTT‑ATAATTTCTCTCTTTATAAAAAAGAAACGGAGATAATTT‑TATTAAACAAACTCAAAACGCCCGGGAAAAAATCAAACAGCTCTTGCACATTTTAATACCGATATTCATTACCCAAGc                   <  7:389639/138‑1 (MQ=255)
                                                                                                                       cTTTTTAAACATAAAATGTT‑AAATTTTCTCTCGTTATCAAAAACAACCGGACATCAATG‑TATCAAACAACCTCAAAACGCCCGGGAAAAAATCAAACAGCTCTTGCACATTTTAATACCGATATTCATTACCCAAGCgg                 <  2:23171/139‑1 (MQ=255)
                                                                                                                               aCATAAAATGTT‑ATAATTTCTCTCGTTATGAAAAAGAAACGGAGATCAATG‑TATGAAAGAAACTCAAAACGCCCGGGAAAAAATCAAACAGCTCTTGCACATTTTAATACCGATATTCATTACCCAAGCGGGGCTTtct         >  8:81974/1‑139 (MQ=255)
                                                                                                                               aCATAAAATGTT‑ATAATTTCTCTCGTTATGAAAAAGAAACGGAGATCAATG‑TATGAAAGAAACTCAAAACGCCCGGGAAAAAATCAAACAGCTCTTGCACATTTTAATACCGATATTCATTACCAAAGCGGGGCtt            >  3:405625/1‑136 (MQ=255)
                                                                                                                               aCAAAAAATGTT‑ATAATATCTCTCGTTATTAAAAACAAACCGATATCAATG‑TATCAAACAAACTCAAAACGCCCGGGAAAAAATCAAACAGCTCTTGCACATTTTAATACCGATATTCATTACCCAAGCGGGGCtt            <  4:214179/136‑1 (MQ=255)
                                                                                                                                       tGTT‑ATAATTTCTCTCGTTATGAATAACAATCGGTTATCAATT‑TATGAAAGAAACTAAAAACGCCCGGGAAAAAATCAAACAGCTCTTGCACATTTTAATACCGATATTCATTACACAAGCGGGGCTTTCTCTGATCa  <  8:322296/138‑1 (MQ=255)
                                                                                                                                        |                                                                                                                                          
TCGAAAGAATCATTCAGTATATTTGCACCTTTTTAGGCGTGATTTCGCTTTCTTTTATTTATGCCCAAATGTTTAGAAAAACGAAACCGACAAAAAAAGAATAGGCCCGGCGTTCATTGCTTTTTATACATAAAATGTT‑ATAATTTCTCTCGTTATGAAAAAGAAACGGAGATCAATG‑TATGAAAGAAACTCAAAACGCCCGGGAAAAAATCAAACAGCTCTTGCACATTTTAATACCGATATTCATTACCCAAGCGGGGCTTTCTCTGATCA  >  CP006881/2071469‑2071741

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A