Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A11 F58 I0 R3 223 82.2 2922920 95.2% 2782619 126.5

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP006881 1,653,890 T→C 19.7% L245P (CTA→CCA)  U712_08495 → GTP‑sensing transcriptional pleiotropic repressor CodY

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0068811,653,8900TC19.7% 149.7 / 34.2 71L245P (CTA→CCA) U712_08495GTP‑sensing transcriptional pleiotropic repressor CodY
Reads supporting (aligned to +/- strand):  ref base T (36/21);  new base C (10/4);  total (46/25)
Fisher's exact test for biased strand distribution p-value = 7.57e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 7.80e-01

TCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCCGTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACTTATATCAAGGTACTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATCACAAAAAGAACCCTTTTTGAGGGTTCTTTTTTTATTTCAAATAAAGGAAATCAATAAGCTTTATTTCCTGGGTTGAAAGTCTTTCTATG  >  CP006881/1653753‑1654027
                                                                                                                                         |                                                                                                                                         
tcttctTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCCGTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGATTCTAGATCATTAGGAATGAAAGGTACTTATATCAAGGTACTa                                                                                                                                          <  2:290590/139‑1 (MQ=255)
    cttGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCCGTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACTTATATCAAGGTACTAaac                                                                                                                                       >  7:343944/1‑138 (MQ=255)
                            cGTGTCGGCATTACCCGTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTAGCGAGTCTAGATCATTAGGAATGAAAGGTACTTATATCAAGGTACCAAACAACAAATTCCTAATTGAATTAGaa                                                                                                               >  3:5834/1‑138 (MQ=255)
                                  ggCATTACCCGTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATAAAAGGTACTTATATCAAGGTACTAAACAACAAATTCCTAATTGAATTAGaaaatcta                                                                                                         <  7:82321/138‑1 (MQ=255)
                                              tCTGTTATTGTGAACGCACTCAGAAAGCTGGAGCGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACTTATATCAAGGTACTAAACAACAAATTCCTAATTGAATTAGAAAATATAAAATCTCATTaa                                                                                             >  8:212926/1‑138 (MQ=255)
                                                  ttATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACTTATATCAAGGTACTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATcac                                                                                         >  3:180245/1‑138 (MQ=255)
                                                  ttATTGTGAACGCACTCAGAAAGATGGAGAGCGCCGGTGTTATCGAGTCTATATCTTTAGGAATGAAATGTACTTATATAAAGGTACTAAACAACAAATTCCTAAATCAATTATAAAATATAAAATATAATTAATcac                                                                                         >  4:24003/1‑138 (MQ=255)
                                                    aTTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACTTATATCAAGGTACCAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATCACaa                                                                                       >  6:89870/1‑138 (MQ=255)
                                                          aaagCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACTTATATCAAGGTACCAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATCACAAAAAGaa                                                                                 <  3:338111/135‑1 (MQ=255)
                                                          aaCGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACTTATATCAAGGTACTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATCACAAAAAGaa                                                                                 <  6:35948/138‑1 (MQ=255)
                                                          aaCGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACTTATATCAAGGTACTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATCACAAAAAGAAc                                                                                >  1:38028/1‑139 (MQ=255)
                                                          aaCGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACTTATATCAAGGGACTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATCACAAAAAGAAc                                                                                <  2:152882/139‑1 (MQ=255)
                                                            cGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACTTGTATCAAGGTACTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATCACAAAAAGAAc                                                                                >  1:27775/1‑137 (MQ=255)
                                                            cGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACTTGTATCAAGGTACTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATCACAAAAAGAAc                                                                                <  2:27775/137‑1 (MQ=255)
                                                            cGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACTTATATCAAGGTACTAAacaaca                                                                                                                                   <  1:24033/86‑1 (MQ=255)
                                                            cGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACTTATATCAAGGTACTAAacaaca                                                                                                                                   >  2:24033/1‑86 (MQ=255)
                                                            cGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACTTATATCAAGGTACTAAAcaacaa                                                                                                                                  >  3:6283/1‑87 (MQ=255)
                                                            cGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACTTATATCAAGGTACTAAAcaacaa                                                                                                                                  <  4:6283/87‑1 (MQ=255)
                                                            cGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATAAAAGGTACTTATATCAAGGTACTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTa                                                                                              >  7:41259/1‑123 (MQ=255)
                                                            cGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATAAAAGGTACTTATATCAAGGTACTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTa                                                                                              <  8:41259/123‑1 (MQ=255)
                                                            cGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTACGAATAAAAGGTACTTATATCAAGGTACTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATCACAAAAAGAAccc                                                                              >  7:244586/1‑139 (MQ=255)
                                                               aCTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAATGTACTTATATCAAGGTACTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATATAATTAATCACAAAAAGAAACCttt                                                                           >  4:48748/1‑139 (MQ=255)
                                                               aCTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACTTATATCAAGGTACTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATCACAAAAAGAACCCttt                                                                           >  6:230583/1‑139 (MQ=255)
                                                               aCTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACTTATATCAAGGTACTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATCACAAAAAGAACCCttt                                                                           >  3:141772/1‑139 (MQ=255)
                                                               aCTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATAAAAGGTACTTATATCAAGGTACTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATCACAAAAAGAACCCttt                                                                           >  5:177370/1‑139 (MQ=255)
                                                                        gCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACTTATATCAAGGTACTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATCACAAAAAGAACCCTTTTTGAGGGtt                                                                  <  5:138782/139‑1 (MQ=255)
                                                                         cTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACTTATATCAAGGTACCAAACAACAAATTCCTAATTGAATTAGaaaatctaaaat                                                                                                     >  1:111227/1‑103 (MQ=255)
                                                                         cTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACTTATATCAAGGTACCAAACAACAAATTCCTAATTGAATTAGaaaatctaaaat                                                                                                     <  2:111227/103‑1 (MQ=255)
                                                                         cTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACTTATATCAAGGTACCAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATCACAAAAAGAACCCTTTTTGAGGGTTc                                                                 >  8:96447/1‑139 (MQ=255)
                                                                             agagCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACTTATATCAAGGTACTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATCACAAAAAGAACCCTTTTTGAGGGTTCtttt                                                             >  8:305212/1‑139 (MQ=255)
                                                                                 cgcCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACTTATATCAAGGTACTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATCACAAAAAGAACCCTTTTTGAGGGTTCTTTTTTTa                                                         >  2:184926/1‑139 (MQ=255)
                                                                                 cgcCGGTGTTATCGAGTCTAGATCATTAGGAATAAAAGGTACTTATATCAAGGTACTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATCACAAAAAGAACCCTTTTTGAGGGTTCTTTTTTTa                                                         >  2:250002/1‑139 (MQ=255)
                                                                                  gcCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACTTATATCAAGGTACTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATCACAAAAAGAACCCTTTTTGAGGGTTCTTTTTTTAt                                                        >  8:267318/1‑139 (MQ=255)
                                                                                   ccGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACTTATATCAAGGTACCAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATCACAAAAAGAACCCTTTTTGAGGGTTCTTTTTTTAtt                                                       >  8:214010/1‑139 (MQ=255)
                                                                                         ttATCGAGTCTAGATCATTAGGAATGAAAGGTACTTATATCAAGGTACTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATCACAAAAAGAACCCTTTTTGAGGGTTCTTTTTTTATTTCaaa                                                  <  4:141772/138‑1 (MQ=255)
                                                                                            tCGAGTCTAGATCATTAGGAATGAAAGGTACTTATATCAAGGTACTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATCACAAAAAGAACCCTTTTTGAGGGTTCTTTTTTTATTTCAAATaa                                               <  7:212926/138‑1 (MQ=255)
                                                                                            tCGAGTCTAGATCATTAGGAATAAAAGGTACTTATATCAAGGTACTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATCACAAAAAGAACCCTTTTTGAGGGTTCTTTTTTTATTTCAAATaaa                                              <  6:177370/139‑1 (MQ=255)
                                                                                                gTCTAGATCATTAGGCATGAAAGGTACTTATATCAAGGTACTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATCACAAAAAGAACCCTTTTTGAGGGTTCTTTTTTTATTTCAAATAAAGGaa                                          <  2:220404/139‑1 (MQ=255)
                                                                                                   tAGATCATTAGGAATGAAAGGTACTTATATCAAGGTACTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATCACAAAAAGAACCCTTTTTGAGGGTTCTTTTTTTATTTCAAATAAAGGa                                           <  1:157166/135‑1 (MQ=255)
                                                                                                   tAGATCATTAGGAATGAAAGGTACTTATATCAAGGTACTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATCACAAAAAGAACCCTTTTTGAGGGTTCTTTTTTTATTTCAAATAAAGGa                                           >  2:157166/1‑135 (MQ=255)
                                                                                                          ttAGGAATGAAAGGTACTTATATCAAGGTACTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATCACAAAAAGAACCCTTTTTGAGGGTTCTTTTTTTATTTCAAATAAAGGAAATCAATAAGc                                >  5:140811/1‑139 (MQ=255)
                                                                                                          ttAGGAATGAAAGGTACTTATATCAAGGTACTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATCACAAAAAGAACCCTTTTTGAGGGTTCTTTTTTTATTTCAAATAAAGGAAATCAATAAGc                                >  1:237717/1‑139 (MQ=255)
                                                                                                          ttAGGAATGAAAGGTACTTATATCAAGGTACTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATCACAAAAAGAACCCTTTTTGAGGGTTCTTTTTTTATTTCAAATAAAGGAAATCAATAAGc                                >  3:352805/1‑139 (MQ=255)
                                                                                                          ttAGGAATGAAAGGTACTTATATCAAGGTACCAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATCACAAAAAGAACCCTTTTTGAGGGTTCTTTTTTTATTTCAAATAAAGGAAATCAATAAGc                                >  4:291295/1‑139 (MQ=255)
                                                                                                           tAGGAATGAAAGGTACTTATATCAAGGTACCAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATCACAAAAAGAACCCTTTTTGAGGGTTCTTTTTTTATTTCAAATAAAGGAAATCAATAAGCt                               >  4:129706/1‑139 (MQ=255)
                                                                                                           tAGGAATGAAAGGTACATATATCAAGGTACTAAACAACAAATTCCTAATAGAAATAGAAAAACTAAAATCGCATAAAACACAAAAAGAACCCTTTTTGAGGTTGATTTTTTTATTTAAAATAAAGCAAAGCAATaacg                                >  5:95601/1‑136 (MQ=255)
                                                                                                             ggAATGAAAGGTACTTATATCAAGGTACTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATCACAAAAAGAACCCTTTTTGAGGGTTCTTTTTTTATTTCAAATAAAGGAAATCAATAAGCttt                             <  4:180245/139‑1 (MQ=255)
                                                                                                                 tGAAAGGTACTTATATCAAGGTACTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATCACAAAAAGAACCCTTTTTGAGGGTTCTTTTTTTATTTCAAATAAAGGAAATCAATAAGCTTTAttt                         >  3:84619/1‑139 (MQ=255)
                                                                                                                     aGGTAATTATCTGAAGGTACCAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATCACAAAAAGAACCCTTTTTGAGGGTTCTTTTTTTATTTCAAATAAAGGAAATCAATAAGCTTTATTTCCTg                     <  4:5834/139‑1 (MQ=255)
                                                                                                                         aCTTATATCAAGGTACTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATCACAAAAAGAACCCTTTTTGAGGGTTCTTTTTTTATTTCTAATAAAGGAAATCAATAAGCTTTATTTCCTGGGtt                 >  5:212440/1‑139 (MQ=255)
                                                                                                                         aCTTATATCAAGGTACTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATCACAAAAAGAACCCTTTTTGAGGGTTCTTTTTTTATTTCAAATAAAGGAAATCAATAAGCTTTATTTCGTGGGtt                 >  1:285847/1‑139 (MQ=255)
                                                                                                                          cTTATATCAAGGTACTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATCACAAAAAGAACCCTTTTTGAGGGTTCTTTTTTTATTTCAAATAAAGGAAATCAATAAGCTTTATTTCCTGGGtt                 >  7:131597/1‑138 (MQ=255)
                                                                                                                          cTTATATCAAGGTACTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATCACAAAAAGAACCCTTTTTGAGGGTTCTTTTTTTATTTCAAATAAAGGAAATCAATAAGCTTTATTTCCTGGGtt                 >  5:173245/1‑138 (MQ=255)
                                                                                                                           ttATATCAAGGTACTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATCACAAAAAGAACCCTTTTTGAGGGTTCTTTTTTTATTTCAAATAAAGGAAATCAATAAGCTTTATTTCCTGGGTTGa               <  2:237717/139‑1 (MQ=255)
                                                                                                                             atatCAAGGTACTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATCACAAAAAGAACCCTTTTTGAGGGTTCTTTTTTTATTTCAAATAAAGGAAATCAATAAGCTTTATTTCCTGGGTTGa               <  1:184926/137‑1 (MQ=255)
                                                                                                                              tatCAAGGTACTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATCACAAAAAGAACCCTTTTTGAGGGTTCTTTTTTTATTTCAAATAAAGGAAATCAATAAGCTTTATTTCCTGGGTTGaaa             <  5:230583/138‑1 (MQ=255)
                                                                                                                              tatCAAGGTACTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATCACAAAAAGAACCCTTTTTGAGGGTTCTTATTTTATTTCAAATAAAGGAAATCAATAAGCTTTATTTCCTGGGTTGaaa             <  3:48748/138‑1 (MQ=255)
                                                                                                                                tCAAGGTACTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATCACAAAAAGAACCCTTTTTGAGGGTTCTTTTTTTATTTCAAATAAAGGAAATCAATAAGCTTTATTTCCTGGGTTGAAAGTc          >  5:56832/1‑139 (MQ=255)
                                                                                                                                 cAAGGTACTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATCACAAAAAGAACCCTTTTTGAGGGTTCTTTTTTTAtt                                                       <  3:172077/93‑1 (MQ=255)
                                                                                                                                 cAAGGTACTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATCACAAAAAGAACCCTTTTTGAGGGTTCTTTTTTTAtt                                                       >  4:172077/1‑93 (MQ=255)
                                                                                                                                  aaGGTACTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATCACAAAAAGAACCCTTTTTGAGGGTTCTTTTTTTATTTCAAATAAAGGAAATCAATAAGCTTTATTTCCTGGGTTGAAAGTCtt        >  1:95955/1‑139 (MQ=255)
                                                                                                                                  aaGGTACCAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATCACAAAAAGAACCCTTTTTGAGGGTTCTTTTTTTATTTCAAATAAAGTAAATCAATAAGATTTATTTCCTGGGTTGAAAGTCtt        >  2:143278/1‑139 (MQ=255)
                                                                                                                                  aaGGTACCAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATCACAAAAAGAACCCTTTTTGAGGGTTCTTTTTTTATTTCAAATAAAGGAAATCAATAAGCTTTATTTCCTGGGTTGAAAGTCtt        >  5:274504/1‑139 (MQ=255)
                                                                                                                                  aaGGTACCAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATCACAAAAAGAACCCTTTTTGAGGGTTCTTTTTTTATTTCAAATAAAGGAAATCAATAAGCTTTATTTCCTGGGTTGAAAGTCtt        >  4:15844/1‑139 (MQ=255)
                                                                                                                                   aGGTACTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATCACAAAAAGAACCCTTTTTGAGGGTTCTTTTTTTATTTCAAATAAAGGAAATCAATAAGCTTTATTTCCTGGGTTGAAAGTCttt       <  6:212440/139‑1 (MQ=255)
                                                                                                                                    ggTACTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATCACAAAAAGAACCCTTTTTGAGGGTTCTTTTTTTATTTCAAATAAAGGAAATCAATAAGCTTTATTTCCTGGGTTGAAAGTCTTTc      >  3:190368/1‑139 (MQ=255)
                                                                                                                                    ggTACCAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATCACAAAAAGAACCCTTTTTGAGGGTTCTTTTTTTATTTCAAATAAAGGAAATCAATAAGCTTTATTTCCTGGGTTGAAAGTCTTTc      <  7:214010/139‑1 (MQ=255)
                                                                                                                                        cTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATCACAAAAAGAACCCTTTTTGAGGGTTCTTTTTTTATTTCAAATAAAGGAAATCAATAAGCTTTATTTCGTGGTTTGAAAGTCTTTGTATg  >  1:47755/1‑139 (MQ=255)
                                                                                                                                        cTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATCACAAAAAGAACCCTTTTTGAGGGTTCTTTTTTTATTTCAAATAAAGGAAATCAATAAGCTTTATTTCCTGGGTTGAAAGTCTTTCTATg  >  2:259149/1‑139 (MQ=255)
                                                                                                                                        cTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATCACAAAAAGAACCCTTTTTGAGGGTTCTTTTTTTATTTCAAATAAAGGAAATCAATAAGCTTTATTTCCTGGGTTGAAAGTCTTTCTATg  >  3:299250/1‑139 (MQ=255)
                                                                                                                                        cTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATCACAAAAAGAACCCTTATTGAGGGTTCTTTTTTTATTTCAAATAAACGAAATCAATAAGCTTTATTTCCTGGGTTGAAAGTCTTTCTATg  >  1:42215/1‑139 (MQ=255)
                                                                                                                                         tAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATCACAAAAAGAACCCTTTTTGAGGGTTCTTTTTTTATTTCAAATAAAGGAAATCAATAAGCTTTATTTCCTGTGTTGAAAGTCTTTCTATg  >  4:271155/1‑138 (MQ=255)
                                                                                                                                         |                                                                                                                                         
TCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCCGTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACTTATATCAAGGTACTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAATCACAAAAAGAACCCTTTTTGAGGGTTCTTTTTTTATTTCAAATAAAGGAAATCAATAAGCTTTATTTCCTGGGTTGAAAGTCTTTCTATG  >  CP006881/1653753‑1654027

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A