Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A11 F58 I0 R3 223 82.2 2922920 95.2% 2782619 126.5

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
MC JC CP006881 1,662,121 (AGCTGAAAGCC)2→1 100% coding (806‑816/1464 nt) U712_08545 → putative flagellar hook‑length control protein

Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ CP006881 1662121 1662131 11 87 [0] [0] 84 U712_08545 putative flagellar hook‑length control protein

New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? CP006881 = 16621200 (0.000)71 (1.040) 36/210 NT 100% coding (805/1464 nt) U712_08545 putative flagellar hook‑length control protein
?CP006881 1662132 = 0 (0.000)coding (817/1464 nt) U712_08545 putative flagellar hook‑length control protein

GATK/CNVnator alignment

N/A