Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A10 F54 I0 R2
|
227 |
88.8 |
3424874 |
95.5% |
3270754 |
127.2 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| JC |
CP006881 |
1,662,121 |
(AGCTGAAAGCC)2→1 |
38.4% |
coding (806‑816/1464 nt) |
U712_08545 → |
putative flagellar hook‑length control protein |
|
| |
seq id |
position |
reads (cov) |
reads (cov) |
score |
skew |
freq |
annotation |
gene |
product |
| * |
? |
CP006881 |
= 1662120 | 51 (0.630) | 29 (0.390) |
24/210 |
NT |
38.4% |
coding (805/1464 nt) |
U712_08545 |
putative flagellar hook‑length control protein |
| ? | CP006881 |
1662132 = |
47 (0.640) | coding (817/1464 nt) |
U712_08545 |
putative flagellar hook‑length control protein |
CTTAAACAGCAAATATTCACTAAAGCTGAGTCAAGTTCAAAACTTTACTCGATGACAGCGTCAGAGCTGAAAAGTTTTCAAAGCTTAATGGATCAAATGTCTATGCTTCCTCAAAAAGGGACCAAAGAATGGAGTTTAGCTGAAAGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP006881/1661973‑1662120
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agctgaaagccTTCTTGTTATCGAAATCATCCGAATCATCACAAGACTTTGGGAAGAGTGTTCTCACACCGCTCTCGCAGAGTTCATCCAGCAAAAATGCATCGGATGTTTCTGGAAGTATTCAGCCTGTAGATAGTAAATCAGG > CP006881/1662132‑1662265
CTTAAACAGCAAATATTCACTAAAGCTGAGTCAAGTTCAAAACTTTACTCGATGACAGCGTCAGAGCTGAAAAGTTTTCAAAGCTTAATGGATCAAATGTCTATGCTTCCTCAAAAAGGGACCAAAGAATGGAGTTTAG > 6:357136/1‑139
TAAACAGCAAATATTCACTAAAGCTGAGTCAAGTTCAAAACTTTACTCGATGACAGCGTCAGAGCTGAAAAGTTTTCAAAGCTTAATGGATCAAATGTCTATGCTTCCTCAAAAAGGGACCAAAGAATGGAGTTTAGCT > 8:92380/1‑139
TAAACAGCAAATATTCACTAAAGCTGAGTCAAGTTCAAAACTTTACTCGATGACAGCGTCAGAGCTGAAAAGTTTTCAAAGCTTAATGGATCAAATGTCTATGCTTCCTCAAAAAGGGACCAAAGAATGGAGTTTAGCT > 1:90726/1‑139
TAAACAGCAAATATTCACTAAAGCTGAGTCAAGTTCAAAAATTTACTCGATTACAGAGTCAGAGCTGAAAAGTTTTCAAAGCTTAATGGATCAAATGTCTATGCTTCCTCAAAAAGTGACCAAAAAATGGAGTATAGCT > 5:146654/1‑139
AACAGCAAATATTCACTAAAGCTGAGTCAAGTTCAAAACTTTACTCGATGACAGCGTCAGAGCTGAAAAGTTTTCAAAGCTTAATGGATCAAATGTCTATGCTTCCTCAAAAAGGGACCAAAGAATGGAGTTTAGCTGA < 7:257141/139‑1
AACAGCAAATATTCACTAAAGCTGAGTCAAGTTCAAAACTTTACTCGATGACAGCGTCAGAGCTGAAAAGTTTTCAAAGCTTAATGGATCAAATGTCTATGCTTCCTCAAAAAGGGACCAAAGAATGGAGTTTAGC < 3:345047/136‑1
GCAAATATTCACTAAAGCTGAGTCAAGTTCAAAACTTTACTCGATGACAGCGTCAGAGCTGAAAAGTTTTCAAAGCTTAATGGATCAAATGTCTATGCTTCCTCAAAAAGGGACCAAAGAATGGAGTTTAGCTGAAAGC < 5:357136/139‑1
CAAATATTCACTAAAGCTGAGTCAAGTTCAAAACTTTACTCGATGACAGCGTCAGAGCTGAAAAGTTTTCAAAGCTTAATGGATCAAATGTCTATGCTTCCTCAAAAAGGGACCAAAGAATGGAGTTTAGCTGAAAGCC > 2:33606/1‑139
ATATTCACTAAAGCTGAGTCAAGTTCAAAACTTTACTCGATGACAGCGTCAGAGCTGAAAAGTTTTCAAAGCTTAATGGATCAAATGTCTATGCTTCCTCAAAAAGGGACCAAAGAATGGAGTTTAGCTGAAAGCC > 3:291001/1‑136
AGTCAAGTTCAAAACTTTACTCGATGACAGCGTCAGAGCTGAAAAGTTTTCAAAGCTTAATGGATCAAATGTCTATGCTTCCTCAAAAAGGGACCAAAGAATGGAGTTTAGCTGAAAGCCTTCTTGTTATCGAAATCAT > 5:360721/1‑139
GTCAAGTTCAAAACTTTACTCGATGACATCGTAAGAGCTGAAAAGTTTTCAAAGCTTAATGGATCAAATGTCTATGCTTCCTAAAAAAGTGACCAAAGAATGGAGTTTAGCTGAAAGCCTTCTTGTTATAGAAATCATC < 5:162368/139‑1
AGTTCAAAACTTTACTCGATGACAGCGTCAGAGCTGAAAAGTTTTCAAAGCTTAATGGATCAAATGTCTATGCTTCCTCAAAAAGGGACCAAAGAATGGAGTTTAGCTGAAAGCCTTCTTGTTATCGAAATCATCCGAA > 8:382156/1‑139
GTTCAAAACTTTACTCGATGACAGCGTCAGAGCTGAAAAGTTTTCAAAGCTTAATGGATCAAATGTCTATGCTTCCTCAAAAAGGGACCAAAGAATGGAGTTTAGCTGAAAGCCTTCTTGTTATCGAAATCATCCG < 4:89045/136‑1
ACTTTACTCGATGACAGCGTCAGAGCTGAAAAGTTTTCAAAGCTTAATGGATCAAATGTCTATGCTTCCTCAAAAAGGGACCAAAGAATGGAGTTTAGCTGAAAGCCTTCTTGTTATCGAAATCATCCGAATCATCACA < 2:386349/139‑1
ACTTTACTCGATGACAGCGTCAGAGCTGAAAAGTTTTCAAAGCTTAATGGATCAAAAGTCTATGCTTCCTCAAAAAGGGACCAAAGAATGGAGTTTAGCTGAACGCCTTCTTGTTATCGAAATCATCCGAATCATCACA < 2:380891/139‑1
TACTCGATGACAGCGTCAGAGCTGAAAAGTTTTCAAAGCTTAATGGATCAAATGTCTATGCTTCCTCAAAAAGGGACCAAAGAATGGAGTTTAGCTGAAAGCCTTCTTGTTATCGAAATCATCCGAATCATCACAAGAC > 2:319849/1‑139
TACTCGATGACAGCGTCAGAGCTGAAAAGTTTTCAAAGCTTAATGGATCAAATGTCTATGCGTCCTCAAAAAGGGACCAAAGAATGGAGTTTAGCTGAAAGCCTTCTTGTTATCGAAATCATCCGAATCATCACAAG < 8:216492/137‑1
TCGATGACAGCGTCAGAGCTGAAAAGTTTTCAAAGCTTAATGGATCAAATGTCTATGCTTCCTCAAAAAGGGACCAAAGAATGGAGTTTAGCTGAAAGCCTTCTTGTTATCGAAATCATCCGAATCATCACAAGAC > 4:267962/1‑136
AGCGTCAGAGCTGAAAAGTTTTCAAAGCTTAATGGATCAAATGTCTATGCTTCCTCAAAAAGGGACCAAAGAATGGAGTTTAGCTGAAAGCCTTCTTGTTATCGAAATCATCCGAATCATCACAAGACTTTGGGAAGAG < 6:91564/139‑1
AGCGTCAGAGCTGAAAAGTTTTCAAAGCTTAATGGATCAAATGTCTATGCTTCCTCAAAAAGGGACCAAAGAATGGAGTTTAGCTGAAAGCCTTCTTGTTATCGAAATCATCCGAATCATCACAAGACTTTGGGAAGAG < 7:382156/139‑1
AGCGTCAGAGCTGAAAAGTTTTCAAAGCTTAAAGGATCAAATGTCTATGCTTCCTCAAAAAGGGACCAAAGAATGGAGTTTAGCTGAAAGCCTTCTTGTTATCGAAATCATCCGAATCATCACAAGACTTTGGGAA < 4:291001/136‑1
AAAAGTTTTCAAAGCTTAATGGATCAAATGTCTATGCTTCCTCAAAAAGTGACCAAAGAATGGAGTTTAGCTGAAAGCCTTCTTGTTATCGAAATCATCCGAATCATCACAAGACTTTGGGAAGAGTGTTCTCACAC < 1:294495/137‑1
AAAAGTTTTCAAAGCTTAATGGATCAAATGTCTATGCTTCCTCAAAAAAGGACCAAAGAATGGAGTTTAGCTGAAAGCCTTCTTGTTATCGAAATCATCCGAATCATCACAAGACTTTGGGAAGA < 2:323220/125‑1
AAAAGTTTTCAAAGCTTAATGGATCAAATGTCTATGCTTCCTCAAAAAAGGACCAAAGAATGGAGTTTAGCTGAAAGCCTTCTTGTTATCGAAATCATCCGAATCATCACAAGACTTTGGGAAGA > 1:323220/1‑125
ATGTCTATGCTTCCTCAAAAAGGGACCAAAGAATGGAGTTTAGCTGAAAGCCTTCTTGTTATCGAAATCATCCGAATCATCACAAGACTTTGGGAAGAGTGTTCTCACACCGCTCTCGCAGAGTTCATCCAGCAA > 3:69335/1‑135
TATGCTTCCTCAAAAAGGGACCAAAGAATGGAGTTTAGCTGAAAGCCTTCTTGTTATCGAAATCATCCGAATCATCACAAGACTTTGGGAAGAGTGTTCTCACACCGCTCTCGCAGAGTTCATCCAGCAAAAATGCATC > 2:252489/1‑139
CTTCCTCAAAAAGGGACCAAAGAATGGAGTTTAGCTGAAAGCCTTCTTGTTATCGAAATCATCCGAATCATCACAAGACTTTGGGAAGAGTGTTCTCACACCGCTCTCGCAGAGTTCATCCAGCAAAAATGCATCGGAT < 1:33606/139‑1
CTTCCTCAAAAAGGGACCAAAGAATGGAGTTTAGCTGAAAGCCTTCTTGTTATCGAAATCATCCGAATCATCACAAGACTTTGGGAAGAGTGTTCTCACACCGCTCTCGCAGAGTTCATCCAGCAAAAATGCATCGGAT < 1:319849/139‑1
CTTCCTCAAAAAGGGACCAAAGAATGGAGTTTAGCTGAAAGCCTTCTTGTTATCGAAATCATCCGAATCATCACAAGACTTTGGGAAGAGTGTTCTCACACCGCTCTCGCAGAGTTCATCCAGCAAAAATGCATC < 4:69335/135‑1
CCTCAAAAAGGGACCAAAGAATGGAGTTTAGCTGAAAGCCTTCTTGTTATCGAAATCATCCGAATCATCACAAGACTTTGGGAAGAGTGTTCTCACACCGCTCTCGCAGAGTTCATCCAGCAAAAATGCATCGGATGTT > 6:221241/1‑139
CCTCAAAAAGGGACCAAAGAATGGAGTTTAGCTGAAAGCCTTCTTGTTATCGAAATCATCCGAATCATCACAAGACTTTGGGAAGAGTGTTCTCACACCGCTCTCGCAGAGTTCATCCAGCAAAAATGCATCGGAT < 7:331512/136‑1
CCTCAAAAAGGGACCAAAGAATGGAGTTTAGCTGAAAGCCTTCTTGTTATCGAAATCATCCGAATCATCACAAGACTTTGGGAAGAGTGTTCTCACACCGCTCTCGCAGAGTTCATCCAGCAAAAATGCATCGGAT > 8:331512/1‑136
AAAGGGACCAAAGAATGGAGGTTAGCTGAACGCCTTCTTGTTATCGAAATCAGCCGAATCATCACAAGACTTTGGGAAGAGTGTTCTCACACCGCTCTCGCAGAGTTCATCCAGCAAAACTGCATCGGATGTTTCTGGA < 6:232560/139‑1
ACCAAAGAATGGAGTTTAGCTGAAAGCCTTCTTGTTATCGAAATCATCCGAATCATCACAAGACTTTGGGAAGAGTGTTCTCACACCGCTCTCGCAGAGTTCATCCAGCAAAAATGCATCGGATGTTTCTGGAAGTATT < 1:64200/139‑1
AAGAATGGAGTTTAGCTGAAAGCCTTCTTGTTATCGAAATCATCCGAATCATCACAAGACTTTGGGAAGAGTGTTCTCACACCGCTCTCGCAGAGTTCATCCAGCAAAAATGCATCGGATGTTTCTGGAAGTATTC < 3:267962/136‑1
GAATGGAGTTTAGCTGAAAGCCTTCTTGTTATCGAAATCATCCGAATCATCACAAGACTTTGGGAAGAGTGTTCTCACACCGCTCTCGCAGAGTTCATCCAGCAAAAATGCATCGGATGTTTCTGGAAGTATTCAGCCT < 7:92380/139‑1
AATGGAGTTTAGCTGAAAGCCTTCTTGTTATCGAAATCATCCGAATCATCACAAGACTTTGGGAAGAGTGTTCTCACACCGCTCTCGCAGAGTTCAGCCAGCAAAAATGCATCGGAGGTTTCTGGAAGTATTCAGC > 4:226640/1‑136
TGGAGTTTAGCTGAAAGCCTTCTTGTTATCGAAATCATCCGAATCATCACAAGACTTTGGGAAGAGTGTTCTCACACCGCGCTCGCAGAGTTCATCCAGCTAAAATGCATCTGATGTTTCTGGAAGTATTCAGACTGTA < 6:389584/139‑1
AGCTGAAAGCCTTCTTGTTATCGAAATCATCCGAATCATCACAAGACTTTGGGAAGAGTGTTCTCACACCGCTCTCGCAGAGTTCATCCAGCATAAATGCATCGGATGTTTGTGGAAGTATTCTGCGTGTAGATTGTAA > 1:203504/1‑139
AGCTGAAAGCCTTCTTGTTATCGAAATCATCCGAATCATCACAAGACTTTGGGAAGAGTGTTCTCACACCGCTCTCGCAGAGTTCATCCAGCAAAAATGCATCGGATGTTTCTGGAAGTATTCAGCCTGTAGATAGTA > 7:199068/1‑138
AAAGCCTTCTTGTTATCGAAATCATCCGAATCATCACAAGACTTTGGGAAGAGTGTTCTCACACCGCTCTCGCAGAGTTCATCCAGCAAAAATGCATCGGATGTTTCTGGAAGTATTCAGCCTGTAGATAGTAAATCAG < 8:362699/139‑1
AAGCCTTCTTGTTATCGAAATCATCCGAATCATCACAAGACTTTGGGAAGAGTGTTCTCACACCGCTCTCGCAGAGTTCATCCAGCAAAAATGCATCGGATGTTTCTGGAAGTATTCAGCCTGTAGATAGTAAATCAGG < 6:205228/139‑1
AAGCCTTCTTGTTATCGAAATCATCCGAATCATCACAAGACTTTGGGAAGAGTGTTCTCACACCGCTCTCGCAGAGTTCATCCAGCAAAAATGCATCGGATGTTTCTGGAAGTATTCAGCCTGTAGATAGTAAATCAGG < 2:153159/139‑1
AAGCCTTCTTGTTATCGAAATCATCCGAATCATCACAAGACTTTGGGAAGAGTGTTCTCACACCGCTCTCGCAGAGTTCATCCAGCAAAAATGCATCGGATGTTTCTGGAAGTATTCAGCCTGTAGATAGTAAATCAGG < 8:356395/139‑1
CTTAAACAGCAAATATTCACTAAAGCTGAGTCAAGTTCAAAACTTTACTCGATGACAGCGTCAGAGCTGAAAAGTTTTCAAAGCTTAATGGATCAAATGTCTATGCTTCCTCAAAAAGGGACCAAAGAATGGAGTTTAGCTGAAAGCC‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ > CP006881/1661973‑1662120
‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑agctgaaagccTTCTTGTTATCGAAATCATCCGAATCATCACAAGACTTTGGGAAGAGTGTTCTCACACCGCTCTCGCAGAGTTCATCCAGCAAAAATGCATCGGATGTTTCTGGAAGTATTCAGCCTGTAGATAGTAAATCAGG > CP006881/1662132‑1662265
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
|---|
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |
GATK/CNVnator alignment
N/A
