Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A9 F56 I0 R1
|
218 |
83.1 |
3292392 |
95.3% |
3137649 |
126.7 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
CP006881 |
1,862,707 |
T→C |
79.3% |
A27A (GCT→GCC) |
U712_09270 → |
Uncharacterized protein yncE |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP006881 | 1,862,707 | 0 | T | C | 79.3%
| 189.3
/ 39.4
| 88 | A27A (GCT→GCC) | U712_09270 | Uncharacterized protein yncE |
| Reads supporting (aligned to +/- strand): ref base T (6/12); new base C (42/26); total (49/39) |
| Fisher's exact test for biased strand distribution p-value = 3.65e-02 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 2.88e-01 |
AGTATATAATTATACTCGTATTCACAAAAATCGTTTAAGTAAGGGGTATACATGAATAGGGGAGTTAGTTTTCAAATACCGAATGAATATGGAAATTTTCTATGGAGAATACTGCAGCCGGTAGAAATAGCTAATTATAGGTGGCAAACGAGTGGGGAATCTTATTTTGTTGTAGAAGGAGAGCTCGATGATGAGGAGCTTTTTCATGACTACGAAATTGTTGAGGGGGCAGTTTTTGAGCAACAATTAAAAACGAATCAG > CP006881/1862576‑1862836
|
agTATATAATTATACTCGTATTCACAAAAATCGTTTAAGTAAGGGGTATACATGAATAGGGGAGTTAGTTTTCAAATACCGAATGAATATGGAAATTTTCTATGGAGAATACTGCAGCCGGTAGAAATAGCTAATta > 7:296836/1‑137 (MQ=255)
agTATATAATTATACTCGTATTCACAAAAATCGTTTAAGTAAGGGGTATACATGAATAGGGGAGTTAGTTTTCAAATACCGAATGAATATGGAAATTTTCTATGGAGAATACTGCAGCCGGTAGAAATAGCCAATta > 7:137664/1‑137 (MQ=255)
ataATTATACTCGTATTCACAAAAATCGTTTAAGTAAGGGGTATACATGAATAGGGGAGTTAGTTTTCAAATACCGAATGAATATGGAAATTTTCTATGGAGAATACTGCAGCCGGTAGAAATAGCCAATTATAGGTgg > 5:335248/1‑139 (MQ=255)
tataCTCGTATTCACAAAAATCGTTTAAGTAAGGGGTATACATGAATAGGGGAGTTAGTTTTCAAATACCGAATGAATATGGAAATTTTCTATGGAGAATACTGCAGCCGGTAGAAATAGCCAATTATAGGTGGCAAAc > 3:8764/1‑139 (MQ=255)
tataCTCGTATTCACAAAAATCGTTTAAGTAAGGGGTATACATGAATAGGGGAGTTAGTTTTCAAATACCGAATGAATATGGAAATTTTCTATGGAGAATACTGCAGCCGGTAGAAATAGCCAATTATAGGTGGCAAAc > 7:201786/1‑139 (MQ=255)
tataCTCGTATTCACAAAAATCGATTAAGTAAGGGGTATACATGAATAGGGCAGTTAGTTTTAAAATACCGAATTAAAATGCAAATTTTCTATGCAGAATACTGAAGCAGGAAGAAATAGAAAATAATAGGTGGCAAAc > 5:177357/1‑139 (MQ=255)
taCTCGTATTCACAAAAATCGTTTAAGTAAGGGGTATACATGAATAGGGGAGTTAGTTTTCAAATACCGAATGAATATGGAAATTTTCTATGGAGAATACTGCAGCCGGTAGAAATAGCCAATTATAGGTGGCAAAc > 3:31773/1‑137 (MQ=255)
taCTCGTATTCACAAAAATCGTTTAAGTAAGGGGTATACATGAATAGGGGAGTTAGTTTTCAAATACCGAATGAATATGGAAATTTTCTATGGAGAATACTGCAGCCGGTAGAAATAGCCAATTATAGGTGGCAAAc > 4:178023/1‑137 (MQ=255)
taCTCGTATTCACAAAAATCGTTTAAGTAAGGGGTATACATGAATAGGGGAGTTAGTTTTCAAATACCGAATGAATATGGAAATTTTCTATGGAGAATACTGCAGCCGGTAGAAATAGCCAATTATAGGTGGCAAAc > 1:200105/1‑137 (MQ=255)
taCTCGTATTCACAAAAATCGTTTAAGTAAGGGGTATACATGAATAGGGGAGTTAGTTTTCAAATACCGAATGAATATGGAAATTTTCTATGGAGAATACTGCAGCCGGTAGAAATAGCCAATTATAGGTGGCAAAc > 3:374924/1‑137 (MQ=255)
cTCGTATTCGCAAAAATCGTTTAAGTAAGGGGTATACATGAATAGGGGAGTTAGTTTTCAAATACCGAATGAATATGGAAATTTTCTATGGAGAATACTGCAGCCGGTAGAAATAGCCAATTATAGGTGGCAAACGAGt > 2:303804/1‑139 (MQ=255)
cTCGTATTCACAAAAATCGTTTAAGTAAGGGGTATACATGAATAGGGGAGTTAGTTTTCAAATACCGAATGAATATGGAAATTTTCTATGGAGAATACTGCAGCCGGTAGAAATAGCCAATTATAGGTGGCAAACGAGt > 8:342058/1‑139 (MQ=255)
tCGTTTTCACATATTTAGTTTAAGTTATGTTTATACATGATTATGGGAGTTTGTTTTCAAATAGCGAATGTTTATGGTATTTTTCTATGGAGAATACTGCAGCCTGTAGAATTAGCTAATTATAGGTTGCATACGAGTg < 6:177357/139‑1 (MQ=255)
gTATTCACAAAAATCGTTTAAGTAAGGGGTATACATGAATAGGGGAGTTAGTTTTCAAATACCGAATGAATATGGAAATTTTCTATGGAGAATACTGCAGCCGGTAGAAATAGCTAATTATAGGTGGCAAACGAGTggg < 7:222492/139‑1 (MQ=255)
gTATTCACAAAAATCGTTTAAGTAAGGGGTAAACATGAATAGGGGAGTTAGTTTTCAAATACCGAATGAATATGGAAATTTTCTATGGAGAATACTGCAGCCGGTAGAAATAGCTAATTATAGGTGGCAAACGAGTggg < 1:393807/139‑1 (MQ=255)
tATTCACAAAAATCGTTTAAGTAAGGGGTATACATGAATAGGGGAGTTAGTTTTCAAATACCGAATGAATATGGAAATTTTCTATGGAGAATACTGCAGCCGGTAGAAATAGCCAATTATAGGTGGCAAACGAGTggg > 4:302843/1‑138 (MQ=255)
aTTCACAAAAATCGTTTAAGTAAGGGGTATACATGAATAGGGGAGTTAGTTTTCAAATACCGAATGAATATGGAAATTTTCTATGGAGAATACTGCAGCCGGTAGAAATAGCCAATTATAGGTGGCAAACGAGTgggg > 8:224670/1‑138 (MQ=255)
aTTCACAAAAATCGTTTAAGTAAGGGGTATACATGAATAGGGGAGTTAGTTTTCAAATACCGAATGAATATGGAAATTTTCTATGGAGAATACTGCAGCCGGTAGAAATAGCCAATTATAGGTGGCAAACGAGTgggg > 6:323786/1‑138 (MQ=255)
ttCACAAAAATCGTTTAAGTAAGGGGTATACATGAATAGGGGAGTTAGTTTTCAAATACCGAATGAATATGGAAATTTTCTATGGAGAATACTGCAGCCGGTAGAAATAGCCAATTATAGGTGGCAAACGAGTGGGGaa > 7:232428/1‑139 (MQ=255)
ttCACAAAAATCGTTTAAGTAAGGGGTATACATGAATAGGGGAGTTAGTTTTCAAATACCGAATGAATATGGAAATTTTCTATGGAGAATACTGCAGCCGGTAGAAATAGCCAATTATAGGTGGCAAACGAGTGGGGaa > 3:107168/1‑139 (MQ=255)
aaaTCGTTTAAGTAAGGGGTATACATGAATAGGGGAGTTAGTTTTCAAATACCGAATGAATATGGAAATTTTCTATGGAGAATACTGCAGCCGGTAGAAATAGCCAATTATAGGTGGCAAACGAGTGGGGAATCTTAtt < 2:164597/139‑1 (MQ=255)
aTCGTTTAAGTAAGGGGTATACATGAATAGGGGAGTTAGTTTTCAAATACCGAATGAATATGGAAATTTTCTATGGAGAATACTGCAGCCGGTAGAAATAGCCAATTATAGGTGGCAAACGAGTGGGGAATCTTAtttt < 4:107168/139‑1 (MQ=255)
gTTTAAGTAAGGGGTATACATGAATATGGTAGTTATTTTTAAAATACAGAATGAATATGGAAATTTTCTATGGAGAATACTGCAGCCGGTAGAAATAGCTAATTATAGGTGGCAAACGAGTGGGGAATCTTATTttgt < 8:296836/138‑1 (MQ=255)
gTTTAAGTAAGGGGTATACATGAATAGGGGAGTTAGTTTTCAAATACCGAATGAATATGGAAATTTTCTATGGAGAATACTGCAGCCGGTAGAAATAGCCAATTATAGGTGGCAAACGAGTGGGGAATCTTATTttgt < 3:178023/138‑1 (MQ=255)
tttAAGTAAGGGGTATACATGAATAGGGGAGTTAGTTTTCAAATACCGAATGAATATGGAAATTTTCTATGGAGAATACTGCAGCCGGTAGAAATAGCTAATTATAGGTgg < 6:220634/111‑1 (MQ=255)
tttAAGTAAGGGGTATACATGAATAGGGGAGTTAGTTTTCAAATACCGAATGAATATGGAAATTTTCTATGGAGAATACTGCAGCCGGTAGAAATAGCTAATTATAGGTgg > 5:220634/1‑111 (MQ=255)
tttAAGTAAGGGGTATACATGAATAGGGGAGTTAGTTTTCAAATACCGAATGAATATGGAAATTTTCTATGGAGAATACTGCAGCCGGTAGAAATAGCCAATTATAGGTGGCAAACGAGTGGGGAATCTTATTttgttg > 3:59545/1‑139 (MQ=255)
tttAAGTAAGGGGTATACATGAATAGGGGAGTTAGTTTTCAAATACCGAATGAATATGGAAATTTTATATGGAGAATACTGCAGCCGGTAGAAATAGCCAATTATAGGTGGCAAACGAGTGGGGAATCTTATTttgttg > 2:309024/1‑139 (MQ=255)
tataCATGAATAGGGGAGTTAGTTTTCAAATACCGAATGAATATGGAAATTTTCTATGGAGAATACTGCAGCCGGTAGAAATAGCCAATTATAGGTGGCAAACGAGTGGGGAATCTTATTTTGTTGTAGAAGGAGAGCt < 8:137664/139‑1 (MQ=255)
tataAATGAATAGGGGAGTTAGTTTTCAAATACCGAATGAATATGGAAATTTTCTATGGAGAATACTGCAGCCGGTAGAAATAGCTAATTATAGGTGGCAAACGAGTGGGGAATCTTATTTTGTTGTAGAAGGAGAGCt < 7:257548/139‑1 (MQ=255)
ataCATGAATAGGGGAGTTAGTTTTCAAATACCGAATGAATATGGAAATTTTCTATGGAGAATACTGCAGCCGGTAGAAATAGCCAATTATAGGTGGCAAACGAGTGGGGAATCTTATTTTGTTGTAGAAGGAGAGCTc > 7:251107/1‑139 (MQ=255)
taCATGAATAGGGGAGTTAGTTTTCAAATACCGAATGAATATGGAAATTTTCTATGGAGAATACTGCAGCCGGTAGAAATAGCTAATTATAGGTGGCAAACGAGTGGGGAATCTTATTTTGTTGTAGAAGGAGAGCTc > 1:120004/1‑138 (MQ=255)
taCATGAATAGGGGAGTTAGTTTTCAAATACCGAATGAATATGGAAATTTTCTATGGAGAATACTGCAGCCGGTAGAAATAGCCAATTATAGGTGGCAAACGAGTGGGGAATCTTATTTTGTTGTAGAAGGAGAGCTCg < 4:374924/139‑1 (MQ=255)
gAATAGGGGAGTTAGTTTTCAAATACCGAATGAATATGGAAATTTTCTATGGAGAATACTGCAGCCGGTAGAAATAGCCAATTATAGGTGGCAAACGAGTGGGGAATCTTATTttgt < 6:143536/117‑1 (MQ=255)
gAATAGGGGAGTTAGTTTTCAAATACCGAATGAATATGGAAATTTTCTATGGAGAATACTGCAGCCGGTAGAAATAGCCAATTATAGGTGGCAAACGAGTGGGGAATCTTATTttgt > 5:143536/1‑117 (MQ=255)
aaTAGGGTAGTTAGTTTTCAAATACCGAATGAATATGGAAATTTTCTATGGAGAATACTGCAGCCGGTAGAAATAGCCAATTATAGGTGGCAAACGAGTGGGGAATCTTATTTTGTTGTAGAAGga < 7:261156/126‑1 (MQ=255)
aaTAGGGGAGTTAGTTTTCAAATACCGAATGAATATGGAAATTTTCTATGGAGAATACTGCAGCCGGTAGAAATAGCTAATTATAGGTGGCAAACGAGTGGGGAATCTTATTTTGTTGTAGAAGGAGAGCTCgatgat > 3:362869/1‑138 (MQ=255)
aaTAGGGGAGTTAGTTTTCAAATACCGAATGAATATGGAAATTTTCTATGGAGAATACTGCAGCCGGTAGAAATAGCCAATTATAGGTGGCAAACGAGTggg < 7:343035/102‑1 (MQ=255)
aaTAGGGGAGTTAGTTTTCAAATACCGAATGAATATGGAAATTTTCTATGGAGAATACTGCAGCCGGTAGAAATAGCCAATTATAGGTGGCAAACGAGTggg > 8:343035/1‑102 (MQ=255)
aaTAGGGGAGTTAGTTTTCAAATACCGAATGAATATGGAAATTTTCTATGGAGAATACTGCAGCCGGTAGAAATAGCCAATTATAGGTGGCAAACGAGTGGGGAATCTTATTTTGTTGTAGAAGga > 8:261156/1‑126 (MQ=255)
aaTAGGGGAGTTAGTTTTCAAATACCGAATGAATATGGAAATTTTCTATGGAGAATACTGCAGCCGGTAGAAATAGCCAATTATAGGTGGCAAACGAGTGGGGAATCTTATTTTGTTGTAGAAGGAGAGCTCgatgat > 2:71453/1‑138 (MQ=255)
tAGGGGAGTTAGTTTTCAAATACCGAATGAATATGGAAATTTTCTATGGAGAATACTGCAGCCGGTAGAAATAGCCAATTATAGGTGGCAAACGAGTGGGGAATCTTATTttgt > 2:337290/1‑114 (MQ=255)
tAGGGGAGTTAGTTTTCAAATACCGAATGAATATGGAAATTTTCTATGGAGAATACTGCAGCCGGTAGAAATAGCCAATTATAGGTGGCAAACGAGTGGGGAATCTTATTttgt < 1:337290/114‑1 (MQ=255)
ggggAGTTAGTTTTCAAATACCGAATGAATATGGAAATTTTCTATGGAGAATACTGCAGCCGGTAGAAATAGCCAATTATAGGTGGCAAACGAGTGGGGAATCTTATTTTGTTGTAGAAGGAGAGCTCGATGATgag > 7:313786/1‑137 (MQ=255)
gggAGTTAGTTTTCAAATACCGAATGAATATGGAAATTTTCTATGGAGAATACTGCAGCCGGTAGAAATAGCCAATTATAGGTGGCAAACGAGTggg > 4:39036/1‑97 (MQ=255)
gggAGTTAGTTTTCAAATACCGAATGAATATGGAAATTTTCTATGGAGAATACTGCAGCCGGTAGAAATAGCCAATTATAGGTGGCAAACGAGTggg < 3:39036/97‑1 (MQ=255)
gggAGTTAGTTTTCAAATACCGAATGAATATGGAAATTTTCTATGGAGAATACTGCAGCCGGTAGAAATAGCCAATTATAGGTGGCAAACGAGTGGGGa > 2:148947/1‑99 (MQ=255)
gggAGTTAGTTTTCAAATACCGAATGAATATGGAAATTTTCTATGGAGAATACTGCAGCCGGTAGAAATAGCCAATTATAGGTGGCAAACGAGTGGGGa < 1:148947/99‑1 (MQ=255)
ttagttTTCAAATACCGAATGAATATGGAAATTTTCTATGGAGAATACTGCAGCCGGTAGAAATAGCTAATTATAGGTGGCAAACGAGTGGGGAATCTTATTTTGTTGTAGAAGGAGAGCTCGATGATGAGGAGCtttt > 5:256708/1‑139 (MQ=255)
ttagttTTCAAATACCGAATGAATATGGAAATTTTCTATGGAGAATACTGCAGCCGGTAGAAATAGCCAATTATAGGTGGCAAACGAGTGGGGAATCTTTTTTTTTTGTAGAAGGAGAGCTCGATGATGAGGACCtttt > 1:346995/1‑139 (MQ=255)
ttagttTTCAAATACCGAATGAATATGGAAATTTTCTATGGAGAATACTGCAGCCGGTAGAAATAGCCAATTATAGGTGGCAAACGAGTGGGGAATCTTATTTTGTTGTAGAAGGAGAGCTCGATGATGAGGAGCtttt > 8:326136/1‑139 (MQ=255)
ttagttTTCAAATACCGAATGAATATGGAAATTTTCTATGGAGAATACTGCAGCCGGTAGAAATAGCCAATTATAGGTGGCAAACGAGTGGGGAATCTTATTTTGTTGTAGAAGGAGAGCTCGATGATGAGCAGCtttt > 1:195252/1‑139 (MQ=255)
ttagttTTCAAATACCGAATGAATATGGAAATTTTCTATGGAGAATACTGCAGCCGGTAGAAATAGACAATTATAGGTGGCAAACGAGTGGGGAATCTTATTTTGTTGTAGAAGGAGAGCTCGATGATGAGGAGCtttt > 4:313068/1‑139 (MQ=255)
agttTTCAAATACCGAATGAATATGGAAATTTTCTATGGAGAATACTGCAGCCGGTAGAAATAGCCAATTATAGGTGGCa > 8:304457/1‑80 (MQ=255)
agttTTCAAATACCGAATGAATATGGAAATTTTCTATGGAGAATACTGCAGCCGGTAGAAATAGCCAATTATAGGTGGCa < 7:304457/80‑1 (MQ=255)
ttttCAAATACCGAATGAATATGGAAATTTTCTATGGAGAATACTGCAGCCGGTAGAAATAGCCAATTATAGGTGGCAAACGAGTGGGGAATCTTATTTTGTTGTAGAAGGAGAGCTCGATGATGAGGAGCTTTTTCAt < 1:303804/139‑1 (MQ=255)
tttCAAATACCGAATGAATATGGAAATTTTCTATGGAGAATACTGCAGCCGGTAGAAATAGCCAATTATAGGTGGCAAACGAGTGGGGAATCTTATTTTGTTGTAGAAGGAGAGCTCGATGATGAGGAGCTTTTTCAt < 8:313786/138‑1 (MQ=255)
cAAATACCGAATGAATATGGAAATTTTCTATGGAGAATACTGCAGCCGGTAGAAATAGCCAATTATAGGTGGCAAACGAGTGGGGAATCTTATTTTGTTGTAGAAGGAGAGCTCGATGATGAGGAGCTTTTTCATGAc > 8:32136/1‑138 (MQ=255)
aaaTACCGAATGAATATGGATATTTTCTATGGAGAATACTGCAGCCGGTAGAAATAGCTAATTATAGGTGGCAAACGAGTGGGGAATCTTATTTTGTTGTAGAAGGAGAGCTCGATGATGAGGAGCTTTTTCATGACTa < 5:25411/139‑1 (MQ=255)
aaaTACCGAATGAATATGGAAATTTTCTATGGAGAATACTGCAGCCGGTAGAAATAGCCAATTATAGGTGGCAAACGAGTGGGGAATCTTATTTTGTTGTAGAAGGAGAGCTCGATGATGAGGAGCTTTTTCATGACTa < 3:46325/139‑1 (MQ=255)
aTACCGAATGAATATGGAAATTTTCTATGGAGAATACTGCAGCCGGTAGAAATAGCCAATTATAGGTGGCAAACGAGTGGGGAATCTTATTTTGTTGTAGAAGGAGAGCTCGATGATGAGGAGCTTTTTCATGACTACg < 7:224670/139‑1 (MQ=255)
aTACCGAATGAATATGGAAATTTTCTATGGAGAATACTGCAGCCGGTAGAAATAGCCAATTATAGGTGGCAAACGAGTGGGGAATCTTATTTTGTTGTAGAAGGAGAGCTCGATGATGAGGAGCTTTTTCATGACTACg < 5:323786/139‑1 (MQ=255)
cctaattaattTGTAAATTTTCTATGGAGAATACTGCAGCCTGTAGAAATAGCCAATTATAGGTGGCAAACGAGTGGGTAATCTTATTTTGTTGTAGAATGAGAGCTCGATGATGAGGAGCTTTTTCATGACTACGaaa < 8:232428/136‑1 (MQ=255)
tatGGAAATTTTCTATGGAGAATACTGCAGCCGGTAGAAATAGCTAATTATAGGTGGCAAACGAGTGGGGAATCTTATTttgt < 4:133930/83‑1 (MQ=255)
tatGGAAATTTTCTATGGAGAATACTGCAGCCGGTAGAAATAGCTAATTATAGGTGGCAAACGAGTGGGGAATCTTATTttgt > 3:133930/1‑83 (MQ=255)
gAAATTTTCTATGGAGAATACTGCAGCCGGTAGAAATAGCTAATTATAGGTGGCAAACGAGTGGGGAATCTTATTTTGTTGTAGAAGGAGAGCTCGATGATGAGGAGCTTTTTCATGACTACGAAATTGTTGAggggg < 2:120004/138‑1 (MQ=255)
gAAATTTTCTATGGAGAATACTGCAGCCGGTAGAAATAGCCAATTATAGGTGGCAAACGAGTGGGGAATCTTATTTTGTTGTAGAAGGAGAGCTCGATGATGAGGAGCTTTTTCATGACTACGAAATTGTTGAggggg < 4:8764/138‑1 (MQ=255)
ttttCTATGGAGAATACTGCAGCCGGTAGAAATAGCCAATTATAGGTGGCAAACGAGTGGGGAATCTTATTTTGTTGTAGAAGGAGAGCTCGATGATGAGGAGCTTTTTCATGACTACGAAATTGTTGAGGGGGCAGtt > 4:66768/1‑139 (MQ=255)
ttCTATGGAGAATACTGCAGCCGGTAGAAATAGCCAATTATAGGTGGCAAACGAGTGGGGAATCTTATTTTGTTGTAGAAGGAGAGCTCGATGATGAGGAGCTTTTTCATGACTACGAAATTGTTGAGGGGGCAGtttt > 6:62267/1‑139 (MQ=255)
ttCTATGGAGAATACTGCAGCCGGTAGAAATAGCCAATTATAGGTGGCAAACGAGTGGGGAATCTTATTTTGTTGTAGAAGGAGAGCTCGATGATGAGGAGCTTTTTCATGACTACGAAATGGTTGAGGGGGCAGtttt > 2:149343/1‑139 (MQ=255)
gagaATACTGCAGCCGGTAGAAATAGCTAATTATAGGTGGCAAACGAGTGGGGAATCTTATTTTGTTGTAGAAGGAGAGCTCGATGATGAGGAGCTTTTTCATGACTACGAAATTGTTGAGGGGGCAGTTTTTGAGca < 4:362869/138‑1 (MQ=255)
aaTACTGCAGCCGGTAGAAATAGCCAATTATAGGTGGCAAACGAGTGGGGAATCTTATTTTGTTGTAGAAGGAGAGCTCGATGATGAGGAGCTTTTTCATGACTACGAAATTGTTGAGGGGTCAGTTTTTGAGcaacaa > 6:97745/1‑139 (MQ=255)
cAGCCGGTAGAAATAGCCAATTATAGGTGGCAAACGAGTggg > 7:214386/1‑42 (MQ=255)
cAGCCGGTAGAAATAGCCAATTATAGGTGGCAAACGAGTggg < 8:214386/42‑1 (MQ=255)
cAGCCGGTAGAAATAGCCAATTATAGGTGGCAAACGAGTGGGGAATCTTATTTTGTTGTAGAAGGAGAGCTCGATGATGAGGAGCTTTTTCATGAGTACGAAATTGTTGAGGGGGCAGTTTTTGAGCAACAATTaaaaa > 2:397146/1‑139 (MQ=255)
cAGCCGGTAGAAATAGCCAATTATAGGTGGCAAACGAGTGGGGAATCTTATTTTGTTGTAGAAGGAGAGCTCGATGATGAGGAGCTTTTTCATGACTACGAAATTGTTGAGGGGGCAGTTTTTGAGCAACAATTaaaaa < 7:326136/139‑1 (MQ=255)
cAGCCGGTAGAAATAGCCAATTATAGGTGGCAAACGAGTGGGGAATCTTATTTTGTTGTAGAAGGAGAGCTCGATGATGAGGAGCTTTTTCATGACTACGAAATTGTTGAGGGGGCAGTTTTTGAGCAACAATTaaaaa < 3:302843/139‑1 (MQ=255)
cAGCCGGTAGAAATACCTAATTATAGCTGGCAACCGAGTGGGGAATATTATTTTGTTGTAGAAGGACAGCGCGATGATGAGGAGCTTTTTCATGACTACGAAATTGTTGAGGGGGCAGTTTTTGAGCAACAATTaaaaa < 6:99185/139‑1 (MQ=255)
ccGGTAGAAATAGCCAATTATAGGTGGCAAACGAGTGGGGAATCTTATTTTGTTGTAGAAGGAGAGCTCGATGATGAGGAGCTTTTTCATGACTACGAAATTGTTGAGGGGGCAGTTTTTGAGCAACAATTAAAAACg > 1:29273/1‑138 (MQ=255)
ccGGTAGAAATAGCCAATTATAGGTGGCAAACGAGTGGGGAATCTTATTTTGTTGTAGAAGGAGAGCTCGATGATGAGGAGCTTTTTCATGACTACGAAATTGTTGAGGGGGCAGTTTTTGAGCAACAATTAAAAACg > 7:161643/1‑138 (MQ=255)
ccGGTAGAAATAGCCAATTATAGGTGGCAAACGAGTGGGGAATCTTATTTTGTTGTAGAAGGAGAGCTCGATGATGAGGAGCTTTTTCATGACTACGAAATTGTTGAGGGGGCAGTTTTTGAGCAACAATTAAAAACg > 7:171809/1‑138 (MQ=255)
ccGGTAGAAATAGCCAATTATAGGTGGCAAACGAGTGGGGAATCTTATTTTGTTGTAGAAGGAGAGCTCGATGATGAGGAGCTTTTTCATGACTACGAAATTGTTGAGGGGGCAGTTTTTGAGCAACAATTAAAAACg > 3:128219/1‑138 (MQ=255)
ggTAGAAATAGCTAATTATAGGTGGCAAACGAGTGGGGAATCTTATTTTGTTGTAGAAGGAGAGCTCGATGATGAGGAGCTTTTTCATGACTACGAAATTGTTGAGGGGGCAGTTTTTGAGCAACAATTAAAAACGAAt < 6:256708/139‑1 (MQ=255)
ggTAGAAATAGCCAATTATCGGTGGCAAACGAGTGGGGAATCTTATTTTGTTGTAGCAGGAGAGCTCGATGATGAGGAGCTTTTTCCTGACTACGAAATTGTTGCGGGGGCAGTTTTTGAGCAACAATTAAAAACGAAt < 6:335248/139‑1 (MQ=255)
ggTAGAAATAGCCAATTATAGGTGGCAAACGAGTGGGGAATCTTATTTTGTTGTAGAAGGAGAGCTCGATGATGAGGAGCTTTTTCATGACTACGAAATTGTTGAGGGGGCAGTTTTTGAGCAACAATTAAAAACGAAt < 5:62267/139‑1 (MQ=255)
tAGAAATAGCCAATTATAGGTGGCAAACGAGTGGGGAATCTTATTTTGTTGTAGAAGGAGAGCTCGATGATGAGGAGCTTTTTCATGACTACGAAATTGTTGAGGGGGCAGTTTTTGAGCAACAATTAAAAACGAAt < 1:149343/137‑1 (MQ=255)
tAGAAATAGCAAATTAAAGGTGTCAATCGTGTGTGGAATCTTATTTTGTTTTATTAGGAGAGCTCGATGATGAGGAGCTTTTTCATGACTACGAAATTTTTGAGGGGGCAGTTTTTGATCAACAATTAAAAACGAAt < 8:181985/137‑1 (MQ=255)
taaaTAGCCAATTATAGGTGTCAAACGAGTTGGGAATCTTATTTTGTTGTAGAAGGAGAGCTCGATGATGAGGAGCTTTTTCATGACTACGAAATTGTTGAGGGGGCAGTTTTTGAGCAACAATTAAAAACGAATCAg < 1:309024/137‑1 (MQ=255)
|
AGTATATAATTATACTCGTATTCACAAAAATCGTTTAAGTAAGGGGTATACATGAATAGGGGAGTTAGTTTTCAAATACCGAATGAATATGGAAATTTTCTATGGAGAATACTGCAGCCGGTAGAAATAGCTAATTATAGGTGGCAAACGAGTGGGGAATCTTATTTTGTTGTAGAAGGAGAGCTCGATGATGAGGAGCTTTTTCATGACTACGAAATTGTTGAGGGGGCAGTTTTTGAGCAACAATTAAAAACGAATCAG > CP006881/1862576‑1862836
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
