Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A9 F56 I13 R1
|
121 |
87.9 |
3230772 |
95.5% |
3085387 |
127.5 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
CP006881 |
1,657,920 |
T→A |
V255D (GTC→GAC) |
U712_08520 → |
Flagellar motor switch protein FliG |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP006881 | 1,657,920 | 0 | T | A | 99.2%
| 436.6
/ NA
| 127 | V255D (GTC→GAC) | U712_08520 | Flagellar motor switch protein FliG |
| Reads supporting (aligned to +/- strand): ref base T (0/1); major base A (71/54); minor base C (1/0); total (72/55) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
Only 100 of 127 total aligned reads displayed.
GGTAGACAGAGGGACAGAGAAGACGATCTTGGATTCATTGGAAATTCAGGATCCCGATCTTGCTGAAGAGATTAAAAAGCGGATGTTTGTCTTCGAAGATATTGTCACACTTGATAACCGTGCAATTCAGAGAGTCATTCGCGATGTTGAGAACGACGATTTGCTCCTTTCATTAAAGGTTGCAAGCGAGGAAGTCAAAGAAATTGTGTTCAACAATATGTCACAGCGTATGGTTGAAACCTTCAAAGAAGAAATGGAGTTTATGGGCC > CP006881/1657786‑1658054
|
ggTAGACAGAGGGACAGAGAAGACGATCTTGGATTCATTGGAAATTCAGGATCCCGATCTTGCTGAAGAGATTAAAAAGCGGATGTTTGTCTTCGAAGATATTGTCACACTTGATAACCGTGCAATTCAGAGAGACAtt > 4:209447/1‑139 (MQ=255)
ggTAGACAGAGGGACAGAGAAGACGATCTTGGATTCATTGGAAATTCAGGATCCCGATCTTGCTGAAGAGATTAAAAAGCGGATGTTTGTCTTCGAAGATATTGTCACACTTGATAACCGTGCAATTCAGAGAGACAtt > 6:114743/1‑139 (MQ=255)
tAGACAGAGGGATAGAGAAGACGATCTTGGATTCATTGGAAATTCAGGATCCCGATCTTGCTGAAGAGATTAAAAAGCGGATGTTTGTCTTCGAAGATATTGTCACACTTGATAACCGTGCAATTCAGAGAGACATTcg < 1:219370/139‑1 (MQ=255)
tAGACAGAGGGACAGAGAAGACGATCTTGGATTCATTGGAAATTCAGGATCCCGATCTTGCTGAAGAGATTAAAAAGCGGATGTTTGTCTTCGAAGATATTGTCACACTTGATAACCGTGCAATTCAGAGAGACATTcg < 1:365545/139‑1 (MQ=255)
gACAGAGGGACAGAGAAGACGATCTTGGATTCATTGGAAATTCAGGATCCCGATCTTGCTGAAGAGATTAAAAAGCGGATGTTTGTCTTCGAAGATATTGTCACACTTGATAACCGTGCAATTCAGAGAGACATTcgcg < 2:384498/139‑1 (MQ=255)
gACAGAGGGACAGAGAAGACGATCTTGGAATCATTGGAAATTCAGGATCCCGATCTTGCTGAAGAGATTAAAAAGCGGATGTTTGTCTTCGAAGATATTGTCACACTTGATAACCGTGCAATTCAGAGAGACATTcgcg < 4:190447/139‑1 (MQ=255)
agGGACAGAGAAGACGATCTTGGATTCATTGGAAATTCAGGATCCCGATCTTGCTGAAGAGATTAAAAAGCGGATGTTTGTCTTCGAAGATATTGTCACACTTGATAACCGTGCAATTCAGAGAGCCATTCGCGATGtt > 5:386264/1‑139 (MQ=255)
agGGACAGAGAAGACGATCTTGGATTCATTGGAAATTCAGGATCCCGATCTTGCTGAAGAGATTAAAAAGCGGATGTTTGTCTTCGAAGATATTGTCACACTTGATAACCGTGCAATTCAGAGAGACATTCGCGATGtt > 8:89997/1‑139 (MQ=255)
agGGACAGAGAAGACGATCTTGGATTCATTGGAAATTCAGGATCCCGATCTTGCTGAAGAGATTAAAAAGCGGATGTTTGTCTTCGAAGATATTGTCACACTTGATAACCGTGCAATTCAGAGAGACATTCGCGATGtt > 2:159315/1‑139 (MQ=255)
gggACAGAGAAGACGATCTTGGATTCATTGGAAATTCAGGATCCCGATCTTGCTGAAGAGATTAAAAAGCGGATGTTTGTCTTCGAAGATATTGTCACACTTGATAACCGTGCAATTCAGAGAGACATTCGCGATGtt > 8:105829/1‑138 (MQ=255)
agagAAGCCGATCTTGGATTCATTGGAAATTCAGGATCCCGATCTTGCTGAAGAGATTAAAAAGCGGATGTTTGTCTTCGAAGATATTGTCACACTTGATAACCGTGCAATTCAGAGAGACATTCGCGATGTTGAGAac > 3:266180/1‑139 (MQ=255)
agagAAGACGATCTTGGATTCATTGGAAATTCAGGATCCCGATCTTGCTGAAGAGATTAAAAAGCGGATGTTTGTCTTCGAAGATATTGTCACACTTGATAACCGTGCAATTCAGAGAGACATTcgcg > 5:105032/1‑128 (MQ=255)
aagaCGATCTTGGATTCATTGGAAATTCAGGATCCCGATCTTGCTGAAGAGATTAAAAAGCGGATGTTTGTCTTCGAAGATATTGTCACACTTGATAACCGTGCAATTCAGAGAGACATTCGCGATGTTGAGAacgac > 2:298015/1‑138 (MQ=255)
aCGATCTTGGATTCATTGGAAATTCAGGATCCCGATCTTGCTGAAGAGATTAAAAAGCGGATGTTTGTCTTCGAAGATATTGTCACACTTGATAACCGTGCAATTCAGAGAGACATTCGCGATGTTGAGAACGACGAtt > 1:237719/1‑139 (MQ=255)
aCGATCTTGGATTCATTGGAAATTCAGGATCCCGATCTTGCTGAAGAGATTAAAAAGCGGATGTTTGTCTTCGAAGATATTGTCACACTTGATAACCGTGCAATTCAGAGAGACATTCGCGATGTTGAGAACGACGAtt > 2:332048/1‑139 (MQ=255)
cTTGGATTCATTGGAAATTCAGGATCCCGATCTTGCTGAAGAGATTAAAAAGCGGATG‑TTGTCTTCGAAGATATTGTCACACTTGATAACCGTGCAATTCAGAGAGACATTCGCGATGTTGAGAACGACGATTTGCTcc > 2:394475/1‑139 (MQ=255)
ggATTCATTGGAAATTCAGGATCCCGATCTTGCTGAAGAGATTAAAAAGCGGATGTTTGTCTTCGAAGATATTGTCACACTTGATAACCGTTCAATTCAGAGAGACATTCGCGATGTTGAGAACGACGATTTGCTCCt < 8:249117/138‑1 (MQ=255)
ggATTCATTGGAAATTCAGGATCCCGATCTTGCTGAAGAGATTAAAAAGCGGATGTTTGTCTTCGAAGATATTGTCACACTTGATAACCGTGCAATTCAGAGAGACATTCGCGATGTTGAGAACGACGATTTGCTCCt < 6:249446/138‑1 (MQ=255)
ggATTCATTGGAAATTCAGGATCCCGATCTTGCTGAAGAGATTAAAAAGCGGATGTTTGTCTTCGAAGATATTGTCACACTTGATAACCGTGCAATTCAGAGAGACATTCGCGATGTTGAGAACGACGATTTGCTCCt < 5:240976/138‑1 (MQ=255)
ggATTCATTGGAAATTCAGGATCCCGATCTTGCTGAAGAGATTAAAAAGCGGATGTTTGTCTTCGAAGATATTGTCACACTTGATAACCGTGCAATTCAGAGAGACATTCGCGATGTTGAGAACGACGATTTGCTCCt < 7:105829/138‑1 (MQ=255)
ggAGTCATTGGAAATTCAGGATCCCGATCTTGCTGAAGAGATTAAAAAGCGGATGGTTGTCTTCGAAGATATTGTCACACTTGATAACCGTGCAATTCAGAGAGACATTCGCGATGTTGAGAACGACGATTTGCTCCt < 2:131131/138‑1 (MQ=255)
aTTGGAAATTCAGGATCCCGATCTTGCTGAAGAGATTAAAAAGCGGATGTTTGTCTTCGAAGATATTGTCACACTTGATAACCGTGCAATTCAGAGAGACATTCTCCATGTTGAGAACTACGATTTACTCCTTACAtt > 6:273730/1‑138 (MQ=255)
aTTGGAAATTCAGGATCCCGATCTTGCTGAAGAGATTAAAAAGCGGATGTTTGTCTTCGAAGATATTGTCACACTTGATAACCGTGCAATTCAGAGAGACATTCGCGATGTTGAGAACGACGATTTGCTCCTTTCAtt > 1:260253/1‑138 (MQ=255)
aTTGGAAATTCAGGATCCCGATCTTGCTGAAGAGATTAAAAAGCGGATGTTTGTCTTCGAAGATATTGTCACACTTGATAACCGTGCAATTCAGAGAGACATTCGCGATGTTGAGAACGACGATTTGCTCCTTTCAtt > 6:233361/1‑138 (MQ=255)
aTTGGAAATTCAGGATCCCGATCTTGCTGAAGAGATTAAAAAGCGGATGTTTGTCTTCGAAGATATTGTCACACTTGATAACCGTGCAATTCAGAGAGACATTCGCGATGTTGAGAACGACGATTTGCTCCTTTCAtt > 3:368076/1‑138 (MQ=255)
aTTGGAAATTCAGGATCCCGATCTTGCTGAAGAGATTAAAAAGCGGATGTTTGTCTTCGAAGATATTGTCACACTTGATAACCGTGCAATTCAGAGAGACATTCGCGATGTTGAGAACGACGATTTGCTCCTTTCATTa < 2:260253/139‑1 (MQ=255)
aTTGGAAATTCAGGATCCCGATCTTGCTGAAGAGATTAAAAAGCGGATGTTTGTCTTCGAAGATATTGTCACACTTGATAACCGTGCAATTCAGAGAGACATTCGCGATGTTGAGAACGACGATTTGCTCCTTTCATTa < 3:358381/139‑1 (MQ=255)
cAGGATCCCGATCTTGCTGAAGAGATTAAAAAGCGGATGTTTGTCTTCGAAGATATTGTCACACTTGATAACCGTGCAATTCAGAGAGACATTCGCGATGTTGAGAACGACGATTTGCTCCTTTCATTAAAGGTTGc > 6:315622/1‑137 (MQ=255)
cccGATCTTGCTGAAGAGATTAAAAAGCGGATGTTTGTCTTCGAAGATATTGTCACACTTGATAACCGTGCAATTCAGAGAGACATTCGCGATGTTGAGAACGACGATTTGCTCCTTTCATTAAAGGTTGCAAGCGAg > 5:246685/1‑138 (MQ=255)
ccGATCTTGCTGAAGAGATTAAAAAGCGGATGTTTGTCTTCGAAGATATTGTCACACTTGATAACCGTGCAATTCAGAGAGACATTCGCGATGTTGAGAACGACGATTTGCTCCTTTCATTAAAGGTTGCAAGCGAgg < 7:89997/138‑1 (MQ=255)
ccGATCTTGCTGAAGAGATTAAAAAGCGGATGTTTGTCTTCGAAGATATTGTCACACTTGATAACCGTGCAATTCAGAGAGACATTCGCGATGTTGAGAACGACGATTTGCTCCTTTCATTAAAGGTTGCAAGCGAgg < 4:338979/138‑1 (MQ=255)
ccGATCTTGATGAAGAGATTAAAAAGCGGATGTTTGTCTTAGAAGATATTGTCACACTTGATAAACGTTCAATTCAGAGATACATTCTCTATGTTTAGAACGACGATTTGCTCCTTTAATTAAATGTTGCAAGCGAgg > 8:207339/1‑138 (MQ=255)
gCTGAAGAGATTAAAAAGCGGATGTTTGTCTTCGAAGATATTGTCACACTTGATAACCGTGCAATTCAGAGAGACATTCGCGATGTTGAGAACGACGATTTGCTCCTTTCATTAAAGGTTGCAAGCGAGGAAGTCa > 4:349442/1‑136 (MQ=255)
aaGAGATTAAAAAGCGGATGTTTGTCTTCGAAGATATTGTCACACTTGATAACCGTGCAATTCAGAGAGACATTCGCGATGTTGAGAACGACGATTTGCTCCTTTCATTAAAGGTTGCAAGCGAGGAAGTCAAAGaaa < 1:298015/138‑1 (MQ=255)
aTTAAAAAGCGGATGTTTGTCTTCGAAGATATTGTCACACTTGATAACCGTGCAATTCAGAGAGACATTCGCGATGTTGAGAACGACGATTTGCTCCTTTCATTAAAGGTTGCAAGCGAGGAAGTCAAAGAAATTgtgt > 8:251423/1‑139 (MQ=255)
aaaaaGCGGATGTTTGTCTTCGAAGATATTGTCACACTTGATAACCGTGCAATTCAGAGAGTCATTCGCGATGTTGAGAACGACGATTTGCTCCTTTCATTAAAGGTTGCAAGCGAGGAAGTCAAAGAAATTGTGTTc < 2:385225/138‑1 (MQ=255)
aaGCGGATGTTTGTCCTCGAAGATATTGTCACACTTGATAACCGTGCAATTCAGAGAGACATTCGCGATGTTGAGAACGACGATTTGCTCCTTTCATTAAAGGTTGCAAGCGAGGAAGTCAAAGAAATTGTGTTcaaca < 1:165708/139‑1 (MQ=255)
gCGGATGTTTGTCTTCGAAGATATTGTCACACTTGATAACCGTGCAATTCAGAGAGACATTCGCGATGTTGAGAACGACGATTTGCTCCTTTCATTAAAGGTTGCAAGCGAGGAAGTCAAAGAAATTGTGTTCAACAat < 6:246685/139‑1 (MQ=255)
ggATGTTTGTCTTCGAAGATATTGTCACACTTGATAACCGTGCAATTCAGAGAGACATTCGCGATGTTGAGAACGACGATTTGCTCCTTTCATTAAAGGt > 3:219779/1‑100 (MQ=255)
ggATGTTTGTCTTCGAAGATATTGTCACACTTGATAACCGTGCAATTCAGAGAGACATTCGCGATGTTGAGAACGACGATTTGCTCCTTTCATTAAAGGt < 4:219779/100‑1 (MQ=255)
ggATGTTTGTCTTCGAAGATATTGTCACACTTGATAACCGTGCAATTCAGAGAGACATTCGCGATGTTGAGAACGACGATTTGCTCCTTTCATTAAAGGTTGCAAGCGAGGAAGTCAAAGAAATTGTGTTCAACAatat > 4:404218/1‑139 (MQ=255)
ggATGTTTGTCTTCGAAGATATTGTCACACTTGATAACCGTGCAATTCAGAGAGACATTCGCGATGTTGAGAACGACGATTTGCTCCTTTCATTAAAGGTTGCAAGCGAGGAAGTCAAAGAAATTGTGTTCAACAatat > 8:47917/1‑139 (MQ=255)
ggATGTTTGTCTTCGAAGATATTGTCACACTTGATAACCGTGCAATTCAGAGAGACATTCGCGATGTTGAGAACGACGATTTGCTCCTTTCATTAAAGGTTGCAAGCGAGGAAGTCAAAGAAATTGTGTTCAACAatat > 5:7750/1‑139 (MQ=255)
aTGTTTGTCTTCGAAGATATTGTCACACTTGATAACCGTGCAATTCAGAGAGACATTCGCGATGGTGAGAACGACGATTTGCTCCTTTCATTAAAGGTTGCAAGCGAGGAAGTCAAAGAAATTGTGTTCAACAATATGt < 6:195051/139‑1 (MQ=255)
tGTTTGTCTTCGAAGATATTGTCACACTTGATAACCGTGCAATTCAGAGAGACATTCGCGATGTTGAGAACGACGATTTGCTCCTTTCATTAAAGGTTGCAAGCGAGGAAGTCAAAGAAATTGTGTTCAACAATATGTc < 2:237719/139‑1 (MQ=255)
tttGTCTTCGAAGATATTGTCACACTTGATAACCGTGCAATTCAGAGAGACATTCGCGATGTTGAGAACGACGATTTGCTCCTTTCATTAAAGGTTGCAAGCGAGGAAGTCAAAGAAATTGTGTTCAACAATATGTca < 1:97428/138‑1 (MQ=255)
tttGGCTTCGAAGATATTGTCACACTTGATAACCGGGCACTTCAGAGAGACATTCGCGATGTTGAGAACGACGATTTGCTCCTTTCATTAAAGGTTGCAAGCGAGGAAGTCAAAGAAATTGTGTTCAACAATATGTca < 8:257510/138‑1 (MQ=255)
ttGTCTTCGAAGATATTGTCACACTTGATAACCGTGCAATTCAGAGAGACATTCGCGATGTTGAGAACGACGATTTGCTCCTTTCATTAAAGGTTGCAAGCGAGGAAGTCAAAGAAATTGTGTTCAACAATATGTcaca < 1:394475/139‑1 (MQ=255)
tGTCTTCGAAGATATTGTCACACTTGATAACCGTGCAATTCAGAGAGACATTCGCGATGTTGAGAACGACGATTTGCTCCTTTCATTAAAGGTTGCAAGCGAGGAAGTCAAGGAAATTGTGTTCAACAATATGTcaca < 8:101243/138‑1 (MQ=255)
tGTCTTCGAAGATATTGTCACACTTGATAACCGTGCAATTCAGAGAGACATTCGCGATGTTGAGAACGACGATTTGCTCCTTTCATTAAAGGTTGCAAGCGAGGAAGTCAAAGAAATTGTGTTCAACAATATGTcaca < 5:87155/138‑1 (MQ=255)
tGTCTTCGAAGATATTGTCACACTTGATAACCGTGCAATTCAGAGAGACATTCGCGATGTTGAGAACGACGATTTGCTCCTTTCATTAAAGGTTGCAAGCGAGGAAGTCAAAGAAATTGTGTTCAACAATATGTCACAg > 6:277261/1‑139 (MQ=255)
ttCGAAGATATTGTCACACTTGATAACCGTGCAATTCAGAGAGACATTCGCGATGTTGAGAACGACGATTTGCTCCTTTCATTAAAGGTTGCAAGCGAGGAAGTCAAAGAAATTGTGTTCAACAATATGTCACAGCGTa < 1:159315/139‑1 (MQ=255)
cGAAGATATTGTCACACTTGATAACCGTGCAATTCAGAGAGACATTCGCGATGTTGAGAACGACGATTTGCTCCTTTCATTAAAGGTTGCAAGCGAGGAAGTCAAAGAAATTGTGTTcaa < 2:371543/120‑1 (MQ=255)
cGAAGATATTGTCACACTTGATAACCGTGCAATTCAGAGAGACATTCGCGATGTTGAGAACGACGATTTGCTCCTTTCATTAAAGGTTGCAAGCGAGGAAGTCAAAGAAATTGTGTTcaa > 1:371543/1‑120 (MQ=255)
tGTCACACTTGATAACCGTGCAATTCAGAGAGACATTCGCGATGTTGAGAACGACGATTTGCTCCTTTCATTAAAGGTTGCAAGCGAGGAAGTCAAAGAAATTGTGTTCAACAATATGTCACAGCGTATGGTTGAAAcc > 6:46049/1‑139 (MQ=255)
gTCACACTTGATAACCGTGCAATTCAGAGAGACATTCGCGATGTTGAGAACGACGATTTGCTCCTTTAATTAAAGGTTGCAAGCGAGGAAGTCAAAGAAATTGTGTTCAACAATATGTCACAGCGTATGGTTGAAACCt > 7:135323/1‑139 (MQ=255)
acacTTGATAACCGTGCAATTCAGAGAGACATTCGCGATGTTGAGAACGACGATTTGCTCCTTTCATTAAAGGTTGCAAGCGAGGAAGTCAAAGAAATTGTGTTCAACAATATGTCACAGCGTATGGTTGAAACCTTc > 5:382133/1‑138 (MQ=255)
acTTGATAACCGTGCAATTCAGAGAGACATTCGCGATGTTGAGAACGACGATTTGCTCCTTTCATTAAAGGTTGCAAGCGAGGAAGTCAAAGAAATTGTGTTCAACAATATGTCACAGCGTATGGTTGAAACCTTCa > 5:243599/1‑137 (MQ=255)
acTTGATAACCGTGCAATTCAGAGAGACATTCGCGATGTTGAGAACGACGATTTGCTCCTTTCATTAAAGGTTGCAAGCGAGGAAGTCAAAGAAATTGTGTTCAACAATATGTCACAGCGTATGGTTGAAACCTTCa > 3:401587/1‑137 (MQ=255)
cTTGATAACCGTGCAATTCAGAGAGACATTCGCGATGTTGAGAACGACGATTTGCTCCTTTCATTAAAGGTTGCAAGCGAGGAAGTCAAAGAAATTGTGTTCAACAATATGTca < 5:269952/114‑1 (MQ=255)
cTTGATAACCGTGCAATTCAGAGAGACATTCGCGATGTTGAGAACGACGATTTGCTCCTTTCATTAAAGGTTGCAAGCGAGGAAGTCAAAGAAATTGTGTTCAACAATATGTca > 6:269952/1‑114 (MQ=255)
gATAACCGTGCAATTCAGAGAGACATTCGCGATGTTGAGAACGACGATTTGCTCCTTTCATTAAAGGTTGCAAGCGAGGAAGTCAAAGAAATTGTGTTcaa < 4:259330/101‑1 (MQ=255)
gATAACCGTGCAATTCAGAGAGACATTCGCGATGTTGAGAACGACGATTTGCTCCTTTCATTAAAGGTTGCAAGCGAGGAAGTCAAAGAAATTGTGTTcaa > 3:259330/1‑101 (MQ=255)
tAACCGTGCAATTCAGAGAGACATTCGCGATGTTGAGAACGACGATTTGCTCCTTTCATTAAAGGTTGCAAGCGAGGAAGTCAAAGAAATTGTGTTCAACAATATGTCACAGCGTATGGTTGAAACCTTCAAagaaga > 4:255908/1‑138 (MQ=255)
aCCGTTCTATTCAGAGAGACATTCGAGATGTTGAGAACGACGATTTGCTCCTTTCATTTAAGGTTGCAAGCGAGGAAGTCAAAGAAATTGTGTTCAACAATATGTCACAGCGTATGGTTGAAACCTTCAAAGAAGaaa < 7:75086/138‑1 (MQ=255)
ccGTGCAATTCAGAGAGACATTCGCGATGTTGAGAACGACGATTTGCTCCTTTCATTAAAGGTTGCAAGCGAGGAAGTCAAAGAAATTGTGTTcaaca < 6:148073/98‑1 (MQ=255)
ccGTGCAATTCAGAGAGACATTCGCGATGTTGAGAACGACGATTTGCTCCTTTCATTAAAGGTTGCAAGCGAGGAAGTCAAAGAAATTGTGTTcaaca > 5:148073/1‑98 (MQ=255)
cGTTCAATTCAGATAGACATTCGCGATGTTGAGAACGACGATTTGCTCCTTTCATTAAAGGTTGCAAGCGAGGAAGGCAAAGAAATTGTGtt < 5:247662/92‑1 (MQ=255)
cGTGCAATTCAGAGAGACATTCGCGATGTTGAGAACGACGATTTGCTCCTTTCATTAAAGGTTGCAAGCGAGGAAGTCAAAGAAATTGTGtt > 6:247662/1‑92 (MQ=255)
cGTGCAATTCAGAGAGACATTCGCGATGTTGAGAACGACGATTTGCTCCTTTCATTAAAGGTTGCAAGCGAGGAAGTCAAAGAAATTGTGTTCAACAATATGTCACAGCGTATGGTTGAAACCTTCAAAGAAGAAATg > 3:315765/1‑138 (MQ=255)
gTGCAATTCAGAGAGACATTCGCGATGTTGAGAACGACGATTTGCTCCTTTCATTAAAGGTTGCAAGCGAGGAAGTCAAAGAAATTGTGTTCAACAATATGTCACAGCGTATGGTTGAAACCTTCAAAGAAGAAATGGa < 4:299363/139‑1 (MQ=255)
tGCAATTCAGAGAGACATTCGCGATGTTGAGAACGACGATTTGCTCCTTTCATTAAAGGTTGCAAGCGAGGAAGTCAAAGAAATTGTGTTCAACAat > 2:186709/1‑97 (MQ=255)
tGCAATTCAGAGAGACATTCGCGATGTTGAGAACGACGATTTGCTCCTTTCATTAAAGGTTGCAAGCGAGGAAGTCAAAGAAATTGTGTTCAACAat < 1:186709/97‑1 (MQ=255)
tGCAATTCAGAGAGACATTCGCGATGTTGAGAACGACGATTTGCTCCTTTCATTAAAGGTTGCAAGCGAGGAAGTCAAAGAAATTGTGTTCAACAATATGTca < 5:314928/103‑1 (MQ=255)
tGCAATTCAGAGAGACATTCGCGATGTTGAGAACGACGATTTGCTCCTTTCATTAAAGGTTGCAAGCGAGGAAGTCAAAGAAATTGTGTTCAACAATATGTca > 6:314928/1‑103 (MQ=255)
tGCAATTCAGAGAGACATTCGCGATGTTGAGAACGACGATTTGCTCCTTTCATTAAAGGTTGCAAGCGAGGAAGTCAAAGAAATTGTGTTCAACAATATGTCACAGCGt > 6:50385/1‑109 (MQ=255)
tGCAATTCAGAGAGACATTCGCGATGTTGAGAACGACGATTTGCTCCTTTCATTAAAGGTTGCAAGCGAGGAAGTCAAAGAAATTGTGTTCAACAATATGTCACAGCGt < 5:50385/109‑1 (MQ=255)
tGCAATTCAGAGAGACATTCGCGATGTTGAGAACGACGATTTGCTCCTTTCATTAAAGGTTGCAAGCGAGGAAGTCAAAGAAATTGTGTTCAACAATATGTCACAGCGTATGGTTTAAACCTTCAAAGAAGAAATGGAg < 5:114743/139‑1 (MQ=255)
tGCAATTCAGAGAGACATTCGCGATGTTGAGAACGACGATTTGCTCCTTTCATTAAAGGTTGCAAGCGAGGAAGTCAAAGAAATTGTGTTCAACAATATGTCACAGCGTATGGTTGa > 2:224542/1‑117 (MQ=255)
tGCAATTCAGAGAGACATTCGCGATGTTGAGAACGACGATTTGCTCCTTTCATTAAAGGTTGCAAGCGAGGAAGTCAAAGAAATTGTGTTCAACAATATGTCACAGCGTATGGTTGa < 1:224542/117‑1 (MQ=255)
tGCAATTCAGAGAGACATTCGCGATGTTGAGAACGACGATTTGCTCCTTTCATTAAAGGTTGCAAGCGAGGAAGTCAAAGAAATTGTGTTCAACAATATGTCACAGCGTATGGTTGAAACCTTCAAAGAAGAAATGGAg > 4:196176/1‑139 (MQ=255)
tGCAATTCAGAGAGACATTCGCGATGTTGAGAACGACGATTTGCTCCTTTCATTAAAGGTTGCAAGCGAGGAAGTCAAAGAAATTGTGTTCAACAATATGTCACAGCGTATGGTTGAAACCTTCAAAGAAGAAATGGAg > 8:282155/1‑139 (MQ=255)
tGCAATTCAGAGAGACATTCGCGATGTTGAGAACGACGATTTGCTCCTTTCATTAAAGGTTGCAAGCGAGGAAGTCAAAGAAATTGTGTTCAACAATATGTCACAGCGTATGGTTGAAACCTTCAAAGAAGAAATGGAg > 8:360205/1‑139 (MQ=255)
tGCAATTCAGAGAGACATTCGCGATGTTGAGAACGACGATTTGCTCCTTTCATTAAAGGTTGCAAGCGAGGAAGTCAAAGAAATTGTGTTCAACAATATGTCACAGCGTATGGTTGAAACCTTCAAAGAAGAAATGGAg > 1:175323/1‑139 (MQ=255)
tGCAATTCAGAGAGACATTCGCGATGTTGAGAACGACGATTTGCTCCTTTCATTAAAGGTTGCAAGCGAGGAAGTCAAAGAAATTGTGTTCAACAATATGTCACAGCGTATGGTTGAAACCTTCAAAGAAGAAATGGAg > 8:63633/1‑139 (MQ=255)
tGCAATTCAGAGAGACATTCGCGATGTTGAGAACGACGATTTGCTCCTTTCATTAAAGGTTGCAAGCGAGGAAGTCAAAGAAATTGTGTTCAACAATATGTCACAGCGTATGGTTGAAACCTTCAAAGAAGAAATGGAg > 2:314988/1‑139 (MQ=255)
tGCAATTCAGAGAGACATTCGCGATGTTGAGAACGACGATTTGCTCCTTTCATTAAAGGTTGCAAGCGAGGAAGTCAAAGAAATTGTGTTCAACAATATGTCACAGCGTATGGTTGAAACCTTCAAAGAAGAAATGGAg > 7:168157/1‑139 (MQ=255)
tGCAATTCAGAGAGACATTCGCGATGTTGAGAACGACGATTTGCTCCTTTCATTAAAGGTTGCAAGCGAGGAAGTCAAAGAAATTGTGTTCAACAATATGTCACAGCGTATGGTTGAAACCTTCAAAGAAGAAATGGAg > 7:144174/1‑139 (MQ=255)
tGCAATTCAGAGAGACATTCGCGATGTTGAGAACGACGATTTGCTCCTTTCATTAAAGGTTGCAAGCGAGGAAGTCAAAGAAATTGTGTTCAACAATATGTCACAGCGTATGGTTGAAACCTTCAAAGAAGAAATGGAg > 3:123826/1‑139 (MQ=255)
tGCAATTCAGAGAGACATTCGCGATGTTGAGAACGACGATTTGCTCCTTTCATTAAAGGTTGCAAGCGAGGAAGTCAAAGAAATTGTGTTCAACAATATGTCACAGCGTATGGTTGAAACCTTCAAAGAAGAAATGGAg > 6:53948/1‑139 (MQ=255)
ggCAATTCAGAGAGACATTCGCGATGTTGAGAACGACGATTTGCTCCTTTCATTAAAGGTTGCAAGCGAGGAAGTCAAAGAAATTGTGTTCAACAATATGTCACAGCGTATGGTTGAAACCTTCAAAGAAGAAATGGAg < 8:252338/138‑1 (MQ=255)
cAATTCAGAGAGACATTCGCGATGTTGAGAACGACGATTTGCTCCTTTCATTAAAGGTTGCAAGCGAGGAAGTCAAAGAAATTGTGTTCAACAATATGTCACAGCGTATGGTTGAAACCTTCAaagaag > 7:353458/1‑129 (MQ=255)
cAATTCAGAGAGACATTCGCGATGTTGAGAACGACGATTTGCTCCTTTCATTAAAGGTTGCAAGCGAGGAAGTCAAAGAAATTGTGTTCAACAATATGTCACAGCGTATGGTTGAAACCTTCAaagaag < 8:353458/129‑1 (MQ=255)
cAATTCAGAGAGACATTCGCGATGTTGAGAACGACGATTTGCTCCTTTCATTAAAGGTTGCAAGCGAGGAAGTCAAAGAAATTGTGTTCAACAATATGTCACAGCGTATGGTTGAAACCTTCAAAGAAGAAAt > 1:130209/1‑133 (MQ=255)
cAATTCAGAGAGACATTCGCGATGTTGAGAACGACGATTTGCTCCTTTCATTAAAGGTTGCAAGCGAGGAAGTCAAAGAAATTGTGTTCAACAATATGTCACAGCGTATGGTTGAAACCTTCAAAGAAGAAAt < 2:130209/133‑1 (MQ=255)
cAATTCAGAGAGACATTCGCGATGTTGAGAACGACGATTTGCTCCTTTCATTAAAGGTTGCAAGCGAGGAAGTCAAAGAAATTGTGTTCAACAATATGTCACAGCGTATGGTTGAAACCTTCAAAGAAGAAATGGAGtt > 1:193049/1‑139 (MQ=255)
agagagACATTCGCGATGTTGAGAACGACGATTTGCTCCTTTCATTAAAGGTTGCAAGCGAGGAAGTCAAAGAAATTGTGTTCAACAATATGTCACAGCGTATGGTTGAAACCTTCAAAGAAGAAATGGAGTTTATggg < 7:360205/139‑1 (MQ=255)
agagACATTCGCGATGTTGAGAACGACGATTTGCTCCTTTCATTAAAGGTTGCAAGCGAGGAAGTCa < 4:122876/67‑1 (MQ=255)
agagACATTCGCGATGTTGAGAACGACGATTTGCTCCTTTCATTAAAGGTTGCAAGCGAGGAAGTCAAAGAAATTGTGTTCAACAATATGTCACAGCGTATGGTTGAAACCTTCAAAGAAGAAATGGAGTTTATGGGcc < 1:332048/139‑1 (MQ=255)
agagACATTCGCGATGTTGAGAACGACGATTTGCTCCTTTAATTAAAGGTTGCAAGCGAGGAAGTCAAAGAAATTGTGTTCAACAATATGTCACAGCGTATGGTTGAAACCTTCAAAGAAGAAATGGAGTTTATGGGcc < 8:135323/139‑1 (MQ=255)
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GGTAGACAGAGGGACAGAGAAGACGATCTTGGATTCATTGGAAATTCAGGATCCCGATCTTGCTGAAGAGATTAAAAAGCGGATGTTTGTCTTCGAAGATATTGTCACACTTGATAACCGTGCAATTCAGAGAGTCATTCGCGATGTTGAGAACGACGATTTGCTCCTTTCATTAAAGGTTGCAAGCGAGGAAGTCAAAGAAATTGTGTTCAACAATATGTCACAGCGTATGGTTGAAACCTTCAAAGAAGAAATGGAGTTTATGGGCC > CP006881/1657786‑1658054
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
