Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A10 F54 I0 R2
|
227 |
88.8 |
3424874 |
95.5% |
3270754 |
127.2 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
freq |
annotation |
gene |
description |
| RA |
CP006881 |
1,658,610 |
C→T |
42.5% |
Q149* (CAA→TAA) |
U712_08525 → |
putative flagellar assembly protein fliH |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | CP006881 | 1,658,610 | 0 | C | T | 42.5%
| 65.3
/ 149.2
| 120 | Q149* (CAA→TAA) | U712_08525 | putative flagellar assembly protein fliH |
| Reads supporting (aligned to +/- strand): ref base C (37/32); new base T (28/23); total (65/55) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 6.39e-02 |
Only 100 of 121 total aligned reads displayed.
TGAAACAGTATGCAGAACTGATCGGCCAAGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGTTGATCCATATTACTATGAGACAATCTTTCAGCAAAAAGATGA > CP006881/1658473‑1658740
|
tGAAACAGTATGCAGAACTGATCGGCCAAGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGgcagca < 7:149815/139‑1 (MQ=255)
aGTATGCAGAACTGATCGGCCAAGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGTAAAAGTc > 7:54745/1‑139 (MQ=255)
tATGCAGAACTGATCGGCCAAGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGCAAAAGTCt > 1:106252/1‑138 (MQ=255)
tGCAGAACTGATCGGCCAAGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGTAAAAGTCtgat > 6:208715/1‑139 (MQ=255)
tGCAGAACTGATCGGCCAAGCAAACAGTATAACTGAAATGTCCAGAAAAGCCGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGTAAAAGTCtgat > 1:113093/1‑139 (MQ=255)
aaCTGATCGGCCAAGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGCAAAAGTCTGATGATa > 6:361808/1‑138 (MQ=255)
aaCTGATCGGCCAAGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGCAAAAGTCTGATGATa > 6:309800/1‑138 (MQ=255)
tGATCGGCCAAGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGTAAAAGTCTGATGATaaa > 2:260406/1‑137 (MQ=255)
tGATCGGCCAAGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGCAAAAGTCtgatg < 1:149309/132‑1 (MQ=255)
tGATCGGCCAAGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGCAAAAGTCtgatg > 2:149309/1‑132 (MQ=255)
aTCGGCCAAGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAgg > 1:137638/1‑139 (MQ=255)
aTCGGCCAAGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAgg > 5:174630/1‑139 (MQ=255)
aTCGGCCAAGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAgg < 8:97503/139‑1 (MQ=255)
aTCGGCCAAGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAgg > 7:97503/1‑139 (MQ=255)
aTCGGCCAAGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAgg > 6:358427/1‑139 (MQ=255)
aTCGGCCAAGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAgg > 1:87043/1‑139 (MQ=255)
tCGGCCAAGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGCAAAAGTCTGATGATaaa > 4:369178/1‑134 (MQ=255)
ggCCAAGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAgg > 3:386105/1‑136 (MQ=255)
ggCCAAGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAgg > 4:108803/1‑136 (MQ=255)
ccAAGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTtc > 2:163654/1‑139 (MQ=255)
ataACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTa > 7:397938/1‑138 (MQ=255)
cTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTaca < 3:222603/136‑1 (MQ=255)
aaaTGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGTAAAAGTCTGATGATAATGAGGCTTTCCTCCTGCTTGTACAACAGGt > 7:369600/1‑139 (MQ=255)
aaaTGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGt > 2:169920/1‑139 (MQ=255)
aTGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTTATGAAGAATTCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCTGCTAAAGTCTGATGATAACGAGGCTTTCCTCCTGCTTGTACAACAGGTta > 2:405713/1‑139 (MQ=255)
aTGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAag < 1:224349/109‑1 (MQ=255)
aTGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAag > 2:224349/1‑109 (MQ=255)
aTGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTta > 6:178460/1‑139 (MQ=255)
aTGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTta > 5:101722/1‑139 (MQ=255)
aTGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCt > 2:246551/1‑114 (MQ=255)
aTGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCt < 1:246551/114‑1 (MQ=255)
aTGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTta > 5:35046/1‑139 (MQ=255)
aTGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTta > 8:233052/1‑139 (MQ=255)
tGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGt > 3:352851/1‑136 (MQ=255)
cAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATaaa < 2:137638/138‑1 (MQ=255)
cAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAAc > 6:174923/1‑139 (MQ=255)
ataaaaGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCTTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAAc > 6:377858/3‑138 (MQ=255)
aGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACg > 3:171099/1‑134 (MQ=255)
aGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGaa < 3:91090/136‑1 (MQ=255)
gCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGa < 1:302218/139‑1 (MQ=255)
gCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGa < 5:309800/139‑1 (MQ=255)
cTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTg > 7:25569/1‑137 (MQ=255)
cTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGa < 2:106252/138‑1 (MQ=255)
gTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTg > 3:364189/1‑135 (MQ=255)
aaGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGa > 8:248558/1‑127 (MQ=255)
aaGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGa < 7:248558/127‑1 (MQ=255)
gCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGCAAAAGTCtg > 1:158734/1‑74 (MQ=255)
gCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGCAAAAGTCtg < 2:158734/74‑1 (MQ=255)
gaagaaGCTAATGAAGAAAGCGTTGAGGTTGCCGTTTCCCTAGCAAAAAAAGTTTGGGAGCAAAAGTCTGATGATAAAGAGGCGTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGATGGAATATTACGatata < 2:188176/138‑1 (MQ=255)
gAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGatata < 5:402080/138‑1 (MQ=255)
gAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGatat < 5:126032/137‑1 (MQ=255)
gAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGat < 4:367019/135‑1 (MQ=255)
gAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGatat < 8:39510/137‑1 (MQ=255)
gAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGat < 3:108803/135‑1 (MQ=255)
aaGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGatatat > 1:4025/1‑138 (MQ=255)
aCGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGat < 3:392025/131‑1 (MQ=255)
gCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGatat < 6:17102/131‑1 (MQ=255)
gCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGatat > 5:17102/1‑131 (MQ=255)
gCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAAtt > 1:188176/1‑138 (MQ=255)
cTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAATCGAAGTGAAGGAATATGACGATATATCAATTTa > 1:296084/1‑139 (MQ=255)
cTAATGAAGAAATCGTTGAGCTAGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGCAAAAGACTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTa > 6:422929/1‑139 (MQ=255)
aagaaATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGTTg < 8:54745/138‑1 (MQ=255)
aagaaATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGTTg < 2:115412/138‑1 (MQ=255)
aagaaATCGTTGAGCGTGCAGTTGCCCTAGCAAAAAAAGTTTGGCATCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGTAGGAATATGACGATATATCAATTTATg < 3:44319/135‑1 (MQ=255)
agaaATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGtt < 4:145276/136‑1 (MQ=255)
agaaATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGtt < 4:386105/136‑1 (MQ=255)
agaaATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGtt < 4:425686/136‑1 (MQ=255)
agaaATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGTTGAt < 1:169920/139‑1 (MQ=255)
agaaATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGtt < 4:77483/136‑1 (MQ=255)
agaaATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGTTGAt < 5:361808/139‑1 (MQ=255)
agaaATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGTTGAt < 6:35046/139‑1 (MQ=255)
agaaATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGCAAAAGGCTGATGATTAAGAGGCTTTCCTCCTGCTTGTACAACAGTTTATAAAAGAAGTGAAGGAATATGACGATATATCAATTTATGTTGAt < 7:70865/139‑1 (MQ=255)
agaaATCGTGGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGTTGAt < 7:28132/139‑1 (MQ=255)
aaaTCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTtcct < 1:283363/73‑1 (MQ=255)
aaaTCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTtcct > 2:283363/1‑73 (MQ=255)
aTCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGTTGATCCa > 2:181481/1‑138 (MQ=255)
tCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGtt < 4:365701/131‑1 (MQ=255)
tCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGtt > 3:365701/1‑131 (MQ=255)
tCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGTTGa > 3:100811/1‑133 (MQ=255)
tCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGTTGa < 4:100811/133‑1 (MQ=255)
cGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGTTGATCCatat > 6:70059/1‑139 (MQ=255)
gTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGTTGATCCatat < 5:208715/138‑1 (MQ=255)
gTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGTTGATCCa > 3:45535/1‑135 (MQ=255)
tGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGTTGATCCATATTAc > 8:276966/1‑139 (MQ=255)
aGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGTTGATCCATATTACt < 1:181481/138‑1 (MQ=255)
gCTTGCCGTTGCCCTAGCAAAAAAAGTTTGTCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGTTGATCCatat < 7:208830/133‑1 (MQ=255)
gCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGTTGATCCatat > 8:208830/1‑133 (MQ=255)
gCCGTTGCCCTGGCAAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGTTGAt < 7:263297/123‑1 (MQ=255)
gCCGTTGCCCTGGCAAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGTTGAt > 8:263297/1‑123 (MQ=255)
ccGTTGCCCTAGCAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGTTGATCCATATTACTATGAGAc < 5:358427/139‑1 (MQ=255)
gTTGCCCTAGCAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAg > 4:306666/1‑85 (MQ=255)
gTTGCCCTAGCAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAg < 3:306666/85‑1 (MQ=255)
gTTGCCCTAGCAAAAAAACTTTGGCAGTAAAAGTCAGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGTTGATCCATATTACTATgaga > 4:241524/1‑136 (MQ=255)
tGCCCTAGCAAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGTTGATCCATATTACTATGAGACAATc > 8:297847/1‑139 (MQ=255)
aGCAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGTTGAt > 6:106353/1‑112 (MQ=255)
gCAAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGTTGATCCATATTACTATGAGACAATCTTTCAg > 1:421878/1‑138 (MQ=255)
aaGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGTTGATCCATATTACTATGAGACAATCTTTCAGCaaaa < 3:369178/136‑1 (MQ=255)
gTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGTTGATCCATATTACTATGAGACAATCTTTCAGCAAAAAg < 4:53268/136‑1 (MQ=255)
tttGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGTTGATCCATA‑TACTATGAGACAATCTTTCAGCAAAAAGATGa > 7:84008/1‑138 (MQ=255)
ttGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGTTGATCCATATTACTATGAGACAATCTTTCAGCAAAATGAt > 4:4369/1‑136 (MQ=255)
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TGAAACAGTATGCAGAACTGATCGGCCAAGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGTTGATCCATATTACTATGAGACAATCTTTCAGCAAAAAGATGA > CP006881/1658473‑1658740
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| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
