Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A9101112 F55 I0 R1 156 414.6 11700970 99.6% 11654166 150.0

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA CP006881 1,658,610 C→T 7.1% Q149* (CAA→TAA)  U712_08525 → putative flagellar assembly protein fliH

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0068811,658,6100CT 7.1% 1210.5 / 48.5 340Q149* (CAA→TAA) U712_08525putative flagellar assembly protein fliH
Reads supporting (aligned to +/- strand):  ref base C (173/142);  new base T (11/13);  total (185/155)
Fisher's exact test for biased strand distribution p-value = 4.04e-01
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.25e-01

Only 100 of 357 total aligned reads displayed.

AAGCTGAGGCAATGAAACAGTATGCAGAACTGATCGGCCAAGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGTTGATCCATATTACTATGAGACAATCTTTCAGCAAAAAGATGAAATCCAGCAGCTTCTTTA  >  CP006881/1658461‑1658758
                                                                                                                                                     |                                                                                                                                                    
       ggCAATGAAACAGTATGCAGAACTGATCGGCCAAGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGCAAAAGTc                                                                                                                                               <  1:1038778/150‑1 (MQ=255)
        gCAATGAAACAGTATGCAGAACTGATCGGCCAAGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGCAAAAGTCt                                                                                                                                              >  2:2660011/1‑150 (MQ=255)
        gCAATGAAACAGTATGCAGAACTGATCGGCCAAGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGCAAAAGTCt                                                                                                                                              <  1:4002806/150‑1 (MQ=255)
            tGAAACAGTATGCAGAACTGATCGGCCAAGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGCAAAAGTCtgatg                                                                                                                                          <  2:2784921/150‑1 (MQ=255)
                  aGTATGCAGAACTGATCGGCCAAGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAag                                                                                                                                    <  1:1797213/150‑1 (MQ=255)
                    tATGCAGAACTGATCGGCCAAGCAAACAGTATAACTGAAATGTCCAGTAAAGCTGTGGTGGACAAGCTTGAAGTAGCTAATGAAGTAATGGTTGTGCTTGCCGTTGCCCTAGCAAAACAAGTTTGGCAGGAAAAGTCTGATGATAAagag                                                                                                                                  >  2:3364807/1‑150 (MQ=255)
                     aTGCAGAACTGATCGGCCAAGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAgg                                                                                                                                 <  1:1270317/150‑1 (MQ=255)
                     aTGCAGAACTGATCGGCCAAGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAgg                                                                                                                                 <  1:1323645/150‑1 (MQ=255)
                      tGCAGAACTGATCGGCCAAGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGTCCCAGCAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGc                                                                                                                                <  1:2581573/150‑1 (MQ=255)
                        caaaaCTGATCGGCCAAGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCtt                                                                                                                              >  2:4551030/4‑150 (MQ=255)
                        cAGAACTGATCGGCCAAGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCtt                                                                                                                              >  2:2523119/1‑150 (MQ=255)
                         aGAACTGATCGGCCAAGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCttt                                                                                                                             >  2:843181/1‑150 (MQ=255)
                         aGAACTGATCGGCCAAGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGGTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCttt                                                                                                                             <  1:2285357/150‑1 (MQ=255)
                          gAACTGATCGGCCAAGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTtc                                                                                                                            <  2:4777318/150‑1 (MQ=255)
                              tGATCGGCCAAGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGC‑AAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTcctcct                                                                                                                       <  1:2720959/150‑1 (MQ=255)
                               gATCGGCCAAGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTcctcct                                                                                                                       >  2:2587721/1‑150 (MQ=255)
                                     ccAAGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGt                                                                                                                 >  1:5418524/1‑150 (MQ=255)
                                      cAAGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTa                                                                                                                >  1:3380083/1‑150 (MQ=255)
                                       aaGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGCAAAAGTCTGTTGAAAAAGAGGCTTTCCTCCTGATTGTac                                                                                                               >  2:5790950/1‑150 (MQ=255)
                                        aGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTaca                                                                                                              >  2:3295647/1‑150 (MQ=255)
                                        aGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTaca                                                                                                              >  1:3678741/1‑150 (MQ=255)
                                            aaCAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAg                                                                                                          >  2:1501063/1‑150 (MQ=255)
                                               aGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGtt                                                                                                       >  2:535450/1‑150 (MQ=255)
                                               aGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGtt                                                                                                       >  2:4393035/1‑150 (MQ=255)
                                                gTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTta                                                                                                      <  1:3343884/150‑1 (MQ=255)
                                                   taACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATaa                                                                                                   >  2:718474/1‑150 (MQ=255)
                                                    aaCTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATaaa                                                                                                  >  2:3567257/1‑150 (MQ=255)
                                                    aaCTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATaaa                                                                                                  <  1:2395524/150‑1 (MQ=255)
                                                     aCTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAAc                                                                                                 >  2:4058152/1‑150 (MQ=255)
                                                     aCTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAAc                                                                                                 >  1:1738621/1‑150 (MQ=255)
                                                      cTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACg                                                                                                <  1:23127/150‑1 (MQ=255)
                                                      cTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACg                                                                                                <  1:1964601/150‑1 (MQ=255)
                                                       tGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGa                                                                                               >  1:1177357/1‑150 (MQ=255)
                                                         aaaTGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAg                                                                                             <  1:4282522/150‑1 (MQ=255)
                                                          aaTGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGGAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGGTTTCCTCCTGCCTGTACAACAGGTTATAAACGAAGt                                                                                            <  1:3202628/150‑1 (MQ=255)
                                                           aTGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTg                                                                                           <  1:5227519/150‑1 (MQ=255)
                                                           aTGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTg                                                                                           >  1:870735/1‑150 (MQ=255)
                                                              tCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAg                                                                                        >  2:3418222/1‑150 (MQ=255)
                                                              tCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAg                                                                                        <  1:1248924/150‑1 (MQ=255)
                                                               ccAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAgg                                                                                       <  1:4981628/150‑1 (MQ=255)
                                                                cAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGa                                                                                      >  2:3984294/1‑150 (MQ=255)
                                                                   aaaaGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAata                                                                                   >  2:1136170/1‑150 (MQ=255)
                                                                   aaaaGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAata                                                                                   >  2:2119115/1‑150 (MQ=255)
                                                                   aaaaGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAata                                                                                   >  2:5535263/1‑150 (MQ=255)
                                                                   aaaaGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGC‑AAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAatat                                                                                  <  1:1017744/150‑1 (MQ=255)
                                                                    aaaGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGAAGGACTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGGTATAAACGAAGAGAAGGAaaat                                                                                  >  1:1908816/1‑150 (MQ=255)
                                                                     aaGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATg                                                                                 <  1:535450/150‑1 (MQ=255)
                                                                     aaGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATg                                                                                 >  2:5116083/1‑150 (MQ=255)
                                                                      aGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGa                                                                                >  2:120705/1‑150 (MQ=255)
                                                                      aGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGa                                                                                >  1:3968361/1‑150 (MQ=255)
                                                                       gCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGAc                                                                               <  1:3036810/150‑1 (MQ=255)
                                                                       gCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGCAAAAGACTGATGATAAAGAGGCTTTCCTCCTGCTTGTACACCAGGTTATAAACGAAGTGAAGGAATATGAc                                                                               <  1:1816816/150‑1 (MQ=255)
                                                                         tGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGa                                                                             <  1:355559/150‑1 (MQ=255)
                                                                          gTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGat                                                                            <  2:3024246/150‑1 (MQ=255)
                                                                           ttGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGata                                                                           >  2:4426558/1‑150 (MQ=255)
                                                                            tGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGTCCTAGCAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGatat                                                                          <  1:1637426/150‑1 (MQ=255)
                                                                            tGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGatat                                                                          >  1:3593396/1‑150 (MQ=255)
                                                                             gAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGatata                                                                         >  2:3747042/1‑150 (MQ=255)
                                                                              aGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGatatat                                                                        >  1:5765243/1‑150 (MQ=255)
                                                                                   aaGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAAtt                                                                   >  2:3248693/1‑150 (MQ=255)
                                                                                     tcTTCAAGACGCTAATGAAGAAATCGTTCAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGCTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTa                                                                 <  1:4741510/149‑1 (MQ=255)
                                                                                      cTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTAt                                                                >  2:446233/1‑150 (MQ=255)
                                                                                      cTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTAt                                                                <  2:144669/150‑1 (MQ=255)
                                                                                       ttGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGGCGATATATCAATTTATg                                                               >  2:4968796/1‑150 (MQ=255)
                                                                                        tGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGt                                                              <  1:2632712/150‑1 (MQ=255)
                                                                                         gAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGtt                                                             >  2:2865799/1‑150 (MQ=255)
                                                                                          aaGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGTTg                                                            <  2:631132/150‑1 (MQ=255)
                                                                                          aaGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGTTg                                                            <  1:507480/150‑1 (MQ=255)
                                                                                           aGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGTTGa                                                           >  2:3858445/1‑150 (MQ=255)
                                                                                              cGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGTTGATcc                                                        <  2:4161807/150‑1 (MQ=255)
                                                                                               gCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGTTGATCCa                                                       <  1:4637453/150‑1 (MQ=255)
                                                                                                cTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGTTGATCCat                                                      <  1:3300962/150‑1 (MQ=255)
                                                                                                  aaTGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGTTGATCCatat                                                    >  2:1321364/1‑150 (MQ=255)
                                                                                                    tGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGTTGATCCATATTa                                                  <  1:1433417/150‑1 (MQ=255)
                                                                                                     gaagaaATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGTTGATCCATATTAc                                                 <  1:2076784/150‑1 (MQ=255)
                                                                                                     gaagaaATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGTTGATCCATATTAc                                                 >  2:1985329/1‑150 (MQ=255)
                                                                                                     gaagaaATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGTTGATCCATATTAc                                                 >  2:4622215/1‑150 (MQ=255)
                                                                                                        gaaATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGTTGATCCATATTACTAt                                              <  1:3175762/150‑1 (MQ=255)
                                                                                                         aaaTCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGTTGATCCATATTACTATg                                             >  2:5432387/1‑150 (MQ=255)
                                                                                                         aaaTCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGTTGATCCATATTACTATg                                             >  1:801464/1‑150 (MQ=255)
                                                                                                            tCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGTTGATCGATATTACTATgaga                                          <  1:345329/150‑1 (MQ=255)
                                                                                                              gTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGTTGATCCATATTACTATGAGACa                                        <  1:3824865/150‑1 (MQ=255)
                                                                                                                  aGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGTTGATCCATATTACTATGAGACAATCt                                    >  1:1556725/1‑150 (MQ=255)
                                                                                                                  aGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGTTGATCCATATTACTATGAGACAATCt                                    <  2:5469438/150‑1 (MQ=255)
                                                                                                                   gCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGTTGATCCATATTACTATGAGACAATCtt                                   >  2:1640807/1‑150 (MQ=255)
                                                                                                                    cTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGTTGATCCATATTACTATGAGACAATCttt                                  >  2:4647691/1‑150 (MQ=255)
                                                                                                                         cGTTGCCCTAGCAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGTTGATCCATATTACTATGAGACAATCTTTCAGCa                             <  1:5543153/150‑1 (MQ=255)
                                                                                                                          gTTGCCCTAGCAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGTTGATCCATATTACTATGAGACAATCTTTCAGCaa                            >  1:2433813/1‑150 (MQ=255)
                                                                                                                              cccTAGCAAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGTTGATCCATATTACTATGAGACAATCTTTCAGCAAAAAg                        <  1:1110468/150‑1 (MQ=255)
                                                                                                                               ccTAGCAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGTTGATCCATATTACTATGAGACAATCTTTCAGCAAAAAGa                       <  1:4450160/150‑1 (MQ=255)
                                                                                                                                cTAGCAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGTTGATCCATATTACTATGAGACAATCTTTCAGCAAAAAGAt                      <  1:4552290/150‑1 (MQ=255)
                                                                                                                                 tAGCAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGTTGATCCATATTACTATGAGACAATCTTTCAGCAAAAAGATg                     <  1:599500/150‑1 (MQ=255)
                                                                                                                                   gCAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGTTGATCCATATTACTATGAGACAATCTTTCAGCAAAAAGATGaa                   <  2:3593396/150‑1 (MQ=255)
                                                                                                                                   gCAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCACCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGTTGATCCATATTACTATGAGACAATCTTTCAGCAAAAAGATGaa                   <  1:4823692/150‑1 (MQ=255)
                                                                                                                                     aaaaaaaGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGTTGATCCATATTACTATGAGACAATCTTTCAGCAAAAAGATGAAAt                 >  2:1909961/1‑150 (MQ=255)
                                                                                                                                         aaaGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGTTGATCCATATTACTATGAGACAATCTTTCAGCAAAAAGATGAAATCcag             <  1:2846882/150‑1 (MQ=255)
                                                                                                                                         aaaGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGTTGATCCATATTACTATGAGACAATCTTTCAGCAAAAAGATGAAATCcag             <  1:4101618/150‑1 (MQ=255)
                                                                                                                                             tttGGCAGCAAAAGTCTGATGATAAAGAGGCTTTGCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGATGATATATCAATTTATGTTGATTCATATTACTATGAGACAAACATTCAGCAAAAAGATGAAATGCagcagc         <  2:2343624/150‑1 (MQ=255)
                                                                                                                                              ttGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGTTGATCCATATTACTATGAGACAATCTTTCAGCAAAAAGATGAAATCCAGCAGct        >  2:1084632/1‑150 (MQ=255)
                                                                                                                                                   agcaAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGTTGATCCATATTACTATGAGACAATCTTTCAGCAAAAAGATGAAATCCAGCAGCTTCttt   >  1:660970/1‑150 (MQ=255)
                                                                                                                                                     |                                                                                                                                                    
AAGCTGAGGCAATGAAACAGTATGCAGAACTGATCGGCCAAGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGTTGATCCATATTACTATGAGACAATCTTTCAGCAAAAAGATGAAATCCAGCAGCTTCTTTA  >  CP006881/1658461‑1658758

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A