Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A10 F54 I2 R2 115 110.6 3932398 95.3% 3747575 126.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP006881 1,658,610 C→T Q149* (CAA→TAA)  U712_08525 → putative flagellar assembly protein fliH

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0068811,658,6100CT100.0% 633.5 / NA 175Q149* (CAA→TAA) U712_08525putative flagellar assembly protein fliH
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (93/82);  total (93/82)

Only 100 of 176 total aligned reads displayed.

ACAGTATGCAGAACTGATCGGCCAAGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGC‑AAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGTTGATCCATATTACTATGAGACAATCTTTCAGCAAAAAGATGAA  >  CP006881/1658477‑1658741
                                                                                                                                      |                                                                                                                                   
aCAGTATGCAGAACTGATCGGCCAAGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGC‑AAAAAAAGTTTGGCAGTAAAAg                                                                                                                                >  2:72938/1‑139 (MQ=255)
  aGTATGCAGAACTGATCGGCCAAGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGC‑AAAAAAAGTTTGGCAGTAAAAGTc                                                                                                                              >  7:85788/1‑139 (MQ=255)
  aGTATGCAGAACTGATCGGCCAAGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGC‑AAAAAAAGTTTGGCAGTAAAAGTc                                                                                                                              <  6:448172/139‑1 (MQ=255)
      tGCAGAACTGATCGGCCAAGCAAACAGTATACCTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCAGTTGCCCTAGC‑AAAATAAGTTTGGCAGTAAAAGTCtgat                                                                                                                          >  8:241664/1‑139 (MQ=255)
      tGCAGAACTGATCGGCCAAGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGC‑AAAAAAAGTTTGGCAGTAAAAGTCtgat                                                                                                                          <  8:350441/139‑1 (MQ=255)
      tGCAGAACTGATCGGCCAAGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGC‑AAAAAAAGTTTGGCAGTAAAAGTCtgat                                                                                                                          >  6:18103/1‑139 (MQ=255)
        cAGAACTGATCGGCCAAGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGC‑AAAAAAAGTTTGGCAGTAAAAGTCtgatga                                                                                                                        >  7:402515/1‑139 (MQ=255)
           aaCTGATCGGCCAAGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGC‑AAAAAAAGTTTGGCAGTAAAAGTCTGATGATa                                                                                                                      >  3:274216/1‑138 (MQ=255)
              tGATCGGCCAAGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGC‑AAAAAAAGTTTGGCAGTAAAAGTCTGATGATaaa                                                                                                                    >  3:175823/1‑137 (MQ=255)
                aTCGGCCAAGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGATCTTGCCGTTGCCATAGC‑AAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAatag                                                                                                                 >  4:340264/1‑138 (MQ=255)
                aTCGGCCAAGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGC‑AAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAgg                                                                                                                >  5:117397/1‑139 (MQ=255)
                aTCGGCCAAGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGC‑AAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAgg                                                                                                                >  2:214780/1‑139 (MQ=255)
                aTCGGCCAAGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGC‑AAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAgg                                                                                                                >  2:190158/1‑139 (MQ=255)
                aTCGGCCAAGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGC‑AAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAgg                                                                                                                >  7:94976/1‑139 (MQ=255)
                aTCGGCCAAGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGC‑AAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAgg                                                                                                                >  8:234414/1‑139 (MQ=255)
                aTCGGCCAAGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGC‑AAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAgg                                                                                                                >  5:427990/1‑139 (MQ=255)
                     ccAAGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGGAATCGTTGAGCTTGCCGTTGCCCTAGC‑AAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTtc                                                                                                           >  3:472021/1‑139 (MQ=255)
                     ccAAGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGC‑AAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTtc                                                                                                           >  4:468161/1‑139 (MQ=255)
                       aaGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGC‑AAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTtcct                                                                                                         <  5:18103/139‑1 (MQ=255)
                          cAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGC‑AAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTcctcct                                                                                                      <  2:314794/139‑1 (MQ=255)
                          cAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGC‑AAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTcctcct                                                                                                      >  4:202144/1‑139 (MQ=255)
                          cAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGC‑AAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTcctcct                                                                                                      <  4:72949/139‑1 (MQ=255)
                            aaCAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGC‑AAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGc                                                                                                    <  3:454432/139‑1 (MQ=255)
                               aGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGC‑AAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTtcct                                                                                                         <  5:358622/131‑1 (MQ=255)
                               aGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGC‑AAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTtcct                                                                                                         >  6:358622/1‑131 (MQ=255)
                               aGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGC‑AAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTg                                                                                                 <  8:85788/139‑1 (MQ=255)
                                gTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGC‑AAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTg                                                                                                 >  8:327979/1‑138 (MQ=255)
                                   taACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGC‑AAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTac                                                                                              >  2:395343/1‑138 (MQ=255)
                                   taACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGC‑AAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTac                                                                                              >  5:465933/1‑138 (MQ=255)
                                     aCTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGC‑AAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTacaac                                                                                           <  1:395343/139‑1 (MQ=255)
                                         aaaTGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGC‑AAAAAAAGTTTGGCATTACATGTCTGATGATAAAGATGCTTTCCTCCTGCTTGTACAACAGGt                                                                                       <  4:381970/139‑1 (MQ=255)
                                         aaaTGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGC‑AAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTcctcct                                                                                                      >  8:308863/1‑124 (MQ=255)
                                         aaaTGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGC‑AAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTcctcct                                                                                                      <  4:417979/124‑1 (MQ=255)
                                         aaaTGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGC‑AAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTacaac                                                                                           <  7:241560/135‑1 (MQ=255)
                                         aaaTGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGC‑AAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTacaac                                                                                           >  8:241560/1‑135 (MQ=255)
                                         aaaTGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGC‑AAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTacaac                                                                                           >  2:451354/1‑135 (MQ=255)
                                         aaaTGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGC‑AAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGt                                                                                       <  6:427990/139‑1 (MQ=255)
                                           aTGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGC‑AAAAAAAGTTTGGCAGTAAAAGTc                                                                                                                              <  6:17129/98‑1 (MQ=255)
                                           aTGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGC‑AAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGCGGCTTTCCTCCTGCTTGTACAACAGGTta                                                                                     >  5:23255/1‑139 (MQ=255)
                                           aTGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGC‑AAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTta                                                                                     >  6:126180/1‑139 (MQ=255)
                                           aTGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGC‑AAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTta                                                                                     >  1:304945/1‑139 (MQ=255)
                                           aTGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGC‑AAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTta                                                                                     <  5:269036/139‑1 (MQ=255)
                                           aTGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGC‑AAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTta                                                                                     >  1:352478/1‑139 (MQ=255)
                                           aTGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGC‑AAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTta                                                                                     >  6:381627/1‑139 (MQ=255)
                                           aTGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGC‑AAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTta                                                                                     >  2:53207/1‑139 (MQ=255)
                                           aTGTCCAGAAAAGCTGTTGACGACAAGCTTGAAGCCGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAAGATTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGt                                                                                       >  1:155688/1‑138 (MQ=255)
                                              tCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGC‑AAAAAAAGTTTGTCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTtata                                                                                   >  7:131859/1‑138 (MQ=255)
                                                cAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGC‑AAAAAAAGTTTGGCAGTAAAAGTc                                                                                                                              <  6:398707/93‑1 (MQ=255)
                                                cAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGC‑AAAAAAAGTTTGGCAGTAAAAGTc                                                                                                                              >  5:398707/1‑93 (MQ=255)
                                                cAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGC‑AAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATaaa                                                                                 <  5:381627/138‑1 (MQ=255)
                                                cAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGC‑AAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATaaa                                                                                 <  2:438303/138‑1 (MQ=255)
                                                cAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGC‑AAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAAc                                                                                >  8:406465/1‑139 (MQ=255)
                                                cAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGC‑AAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAAc                                                                                >  4:455166/1‑139 (MQ=255)
                                                   aaaaGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGC‑AAATAAAGATTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGaa                                                                             <  3:472953/139‑1 (MQ=255)
                                                      aGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGC‑AAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTg                                                                          <  3:488210/139‑1 (MQ=255)
                                                       gCTGTTGAGGAGAAGCGTGAAGACGATAGTGAAGAAATCGATGAGCTTGCCGTTGCCCTAGC‑AAAAAAAGTTTGGCAGTAACAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACATCAGGTTATAAACGAAGTGa                                                                         <  5:228464/139‑1 (MQ=255)
                                                       gCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGC‑AAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACg                                                                               >  1:49554/1‑133 (MQ=255)
                                                       gCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGC‑AAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACg                                                                               <  2:49554/133‑1 (MQ=255)
                                                       gCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGC‑AAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGa                                                                         <  4:444586/139‑1 (MQ=255)
                                                       gCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGC‑AAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGa                                                                         <  1:72938/139‑1 (MQ=255)
                                                       gCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGC‑AAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGa                                                                         <  7:327979/139‑1 (MQ=255)
                                                       gCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGC‑AAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGa                                                                         <  3:468161/139‑1 (MQ=255)
                                                        cTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGC‑AAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTg                                                                          >  7:305602/1‑137 (MQ=255)
                                                        cTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGC‑AAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTg                                                                          >  7:205420/1‑137 (MQ=255)
                                                               ggACAAGCTTGAAGACGCTAATGAAGGAATCGTTGAGCTTGCCGTTGCCCTAGC‑AAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAatat                                                                 <  4:472021/139‑1 (MQ=255)
                                                                  cAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGC‑AAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGAc                                                              >  1:313856/1‑139 (MQ=255)
                                                                   aaGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGC‑AAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCGTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACg                                                             >  2:170786/1‑139 (MQ=255)
                                                                   aaGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGC‑AAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTCCTTGTACAACAGGTTATAAACTAAGTGAAGGAATATGAc                                                              >  1:158163/1‑138 (MQ=255)
                                                                    agattGAAGAAGCTAATTAAGAAATAGTTGAGATTGACGTTTCACTAGA‑AAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCATGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGa                                                            <  3:340264/136‑1 (MQ=255)
                                                                     gCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGC‑AAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGa                                                            >  6:118346/1‑138 (MQ=255)
                                                                         gAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGC‑AAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGatata                                                        <  3:58426/138‑1 (MQ=255)
                                                                         gAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGC‑AAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGatata                                                        <  6:32707/138‑1 (MQ=255)
                                                                         gAAGACGCTAATGAAGAAATAGTTGAGCTTGCCGTTGCCCTAGC‑AAAATAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGatata                                                        <  3:179128/138‑1 (MQ=255)
                                                                             aCGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGC‑AAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAAt                                                   <  2:238457/139‑1 (MQ=255)
                                                                              cGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGC‑AAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAAt                                                   <  2:352478/138‑1 (MQ=255)
                                                                              cGCTAATGAAGAAATCGTTGAGCTTGCCGTTGACATAGC‑AAAAAAAGTTTGGCAGTAAAAGTCTGATGATATAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAAt                                                   <  7:231807/138‑1 (MQ=255)
                                                                               gCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGC‑AAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTacaa                                                                                            <  1:420627/96‑1 (MQ=255)
                                                                               gCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGC‑AAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAATCGAAGTGAAGGAATATGACTATATATCAAtt                                                  >  1:421881/1‑138 (MQ=255)
                                                                               gCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGC‑AAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAAtt                                                  >  7:28550/1‑138 (MQ=255)
                                                                                      aagaaATCGTTGAGCTTGCCGTTGCCCTAGC‑AAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGTTg                                           <  4:35099/138‑1 (MQ=255)
                                                                                       ataaaTCGGTGAGCTTGCGGTTGCCCTAGC‑AAAACAAGGTGGGCAGTAAAAGTCTCAAGATACAGAGGCTTTCCTCCTGCTTGTACCACAGGTTATAAACGAAGTGAAGGAATATGACGATAAATCAATTTATGTTGAt                                         <  1:98964/137‑1 (MQ=255)
                                                                                       agaaATCGTTGAGCTTGCCGTTGCCCTAGC‑AAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGTTGAt                                         <  4:402180/139‑1 (MQ=255)
                                                                                       agaaATCGTTGAGCTTGCCGTTGCCCTAGC‑AAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGTTGAt                                         <  8:437598/139‑1 (MQ=255)
                                                                                       agaaATCGTTGAGCTTGCCGTTGCCCTAGC‑AAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGTTGAt                                         <  6:269991/139‑1 (MQ=255)
                                                                                       agaaATCGTTGAGCTTGCCGTTGCCCTAGC‑AAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGTTGAt                                         <  6:221585/139‑1 (MQ=255)
                                                                                         aaaTCGTTGAGCTTGCCGTTGCCCTAGC‑AAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGTTGATc                                        >  2:93917/1‑138 (MQ=255)
                                                                                           aTCGTTGAGCTTGCCGTTGCCCTAGC‑AAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGaa                                                                             <  1:446673/99‑1 (MQ=255)
                                                                                              gTTGAGCTTGCCGTTGCCCTAGC‑AAAAATAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGTTGATCCatat                                   <  2:156650/138‑1 (MQ=255)
                                                                                              gTTGAGCTTGCCGTTGCCCTAGC‑AAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGTTGATCCatat                                   <  5:142186/138‑1 (MQ=255)
                                                                                              gTTGAGCTTGCCGTTGCCCTAGC‑AAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGTTGATCCatat                                   <  5:118346/138‑1 (MQ=255)
                                                                                              gTTGAGCTTGCCGTTGCCCTAGC‑AAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGTTGATCCatat                                   <  1:190158/138‑1 (MQ=255)
                                                                                                tGAGCTTGCCGTTGCCCTAGC‑AAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATg                                              <  7:418151/125‑1 (MQ=255)
                                                                                                       gCCGTTGCCCTAGC‑AAAAAAAGTTTGGCAGTAAAATTCTGATGATAAAGAGGCTTTCCTCCAGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGTTGATCCATATTACTATgaga                         >  8:292957/1‑139 (MQ=255)
                                                                                                       gCCGTTGCCCTAGC‑AAAAAAAGTTTGGCAGTAAAAGTCtga                                                                                                                           <  3:40525/41‑1 (MQ=255)
                                                                                                       gCCGTTGCCCTAGC‑AAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGTTGAt                                         >  2:28310/1‑123 (MQ=255)
                                                                                                            tGCCCTAGC‑AAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGTTGATCCATATTACTATGAGACAATc                    >  4:171927/1‑139 (MQ=255)
                                                                                                                 tAGC‑AAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGTTGATCCATATTACTATGAGACAATCttt                 >  1:247219/1‑137 (MQ=255)
                                                                                                                         aaaaGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGTTGATCCata                                    >  4:310471/1‑111 (MQ=255)
                                                                                                                              tttGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGTTGATCCATATTACt                               >  3:395702/1‑111 (MQ=255)
                                                                                                                                tgccagtaAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGTTGATCCATATTACTATGAGACAATCTTTCACCAAAAAGATGaa  <  6:189502/135‑1 (MQ=255)
                                                                                                                                      |                                                                                                                                   
ACAGTATGCAGAACTGATCGGCCAAGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGC‑AAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGTTGATCCATATTACTATGAGACAATCTTTCAGCAAAAAGATGAA  >  CP006881/1658477‑1658741

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A