Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A11 F58 I1 R3 118 63.0 2369054 95.4% 2260077 127.1

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA CP006881 1,658,610 C→T Q149* (CAA→TAA)  U712_08525 → putative flagellar assembly protein fliH

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*CP0068811,658,6100CT100.0% 292.9 / NA 82Q149* (CAA→TAA) U712_08525putative flagellar assembly protein fliH
Reads supporting (aligned to +/- strand):  ref base C (0/0);  new base T (41/41);  total (41/41)

TGCAGAACTGATCGGCCAAGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGTTGATCCATATTACTATGAGACAATCTTTCAG  >  CP006881/1658483‑1658729
                                                                                                                               |                                                                                                                       
tGCAGAACTGATCGGCCAAGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGTAAAAGTCtgat                                                                                                              >  7:191663/1‑139 (MQ=255)
tGCAGAACTGATCGGCCAAGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGAAAAGCTTGATGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGTAAAAGTCtgat                                                                                                              >  6:60361/1‑139 (MQ=255)
tGCACAACTGAGCGGCCAAGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGTAAAAGTCtgat                                                                                                              <  4:193640/139‑1 (MQ=255)
     aaCTGATCGGCCAAGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGTAAAAGTCTGATGATa                                                                                                          >  2:75275/1‑138 (MQ=255)
        tGATCGGCCAAGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGTAAAAGTCTGATGATaaa                                                                                                        >  6:29134/1‑137 (MQ=255)
          aTCGGCCAAGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAgg                                                                                                    >  4:51826/1‑139 (MQ=255)
          aTCGGCCAAGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAgg                                                                                                    >  7:100796/1‑139 (MQ=255)
          aTCGGCCAAGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAgg                                                                                                    >  6:27079/1‑139 (MQ=255)
          aTCGGCCAAGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAgg                                                                                                    >  8:106433/1‑139 (MQ=255)
          aTCGGCCAAGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAgg                                                                                                    >  6:229157/1‑139 (MQ=255)
          aTCGGCCAAGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAgg                                                                                                    >  5:164116/1‑139 (MQ=255)
          aTCGGCCAAGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAgg                                                                                                    >  4:64530/1‑139 (MQ=255)
          aTCGGCCAAGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAATAAAAGTCTGATGATAAAGAgg                                                                                                    >  6:235350/1‑139 (MQ=255)
            cGGCCAAGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCt                                                                                                  <  1:79915/139‑1 (MQ=255)
             ggCCAAGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCt                                                                                                  <  4:219380/138‑1 (MQ=255)
             ggCCAAGCAAACAGTATAACTGAAATGGCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCt                                                                                                  <  6:121020/138‑1 (MQ=255)
               ccAAGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACTAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTtc                                                                                               >  6:67623/1‑139 (MQ=255)
                 aaGCAACCAGAATAACTGTAATGTCCCCAAAAGGAGTTGTCGACAAGCTTGTAGTCGCTAATGAAGAAATCGTTGAGCTTGCCGTTTCCCTAGCAAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTtcct                                                                                             <  1:140023/139‑1 (MQ=255)
                    cAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTcctcct                                                                                          >  4:221105/1‑139 (MQ=255)
                    cAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTcctcct                                                                                          >  3:159667/1‑139 (MQ=255)
                    cAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTcctcct                                                                                          <  4:159667/139‑1 (MQ=255)
                    cAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTcctcct                                                                                          <  2:51587/139‑1 (MQ=255)
                       aCAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCt                                                                                       <  2:96513/139‑1 (MQ=255)
                         aGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTg                                                                                     <  8:191663/139‑1 (MQ=255)
                             taACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTac                                                                                  >  1:236821/1‑138 (MQ=255)
                             taACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTac                                                                                  >  6:272893/1‑138 (MQ=255)
                             taACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTac                                                                                  >  7:96221/1‑138 (MQ=255)
                               aCTGAAATGTCCAGAAAAGCTGTTGAGGACAAGGTTGAAGACGCTAATGAAGAAATAGTTGAGCTTGCCGTTGCCCTAGCTAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTacaac                                                                               <  8:211023/139‑1 (MQ=255)
                                   aaaTGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGt                                                                           >  2:112696/1‑139 (MQ=255)
                                   aaaTGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGt                                                                           >  5:45494/1‑139 (MQ=255)
                                   aaaTGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGt                                                                           >  5:119692/1‑139 (MQ=255)
                                   aaaTGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGt                                                                           >  7:124755/1‑139 (MQ=255)
                                   aaaTGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGt                                                                           >  1:204963/1‑139 (MQ=255)
                                   aaaTGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGt                                                                           >  4:64272/1‑139 (MQ=255)
                                     aTGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGATGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGTCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTta                                                                         >  8:60293/1‑139 (MQ=255)
                                     aTGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTta                                                                         >  7:149748/1‑139 (MQ=255)
                                          cAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAAc                                                                    >  1:69008/1‑139 (MQ=255)
                                           aGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACg                                                                   <  7:165809/139‑1 (MQ=255)
                                           aGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACg                                                                   <  8:96221/139‑1 (MQ=255)
                                           aGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACg                                                                   <  3:221105/139‑1 (MQ=255)
                                           aGAAAAGCTGTTGAGGACAAGCTAGAAGACGCTAATGAAGAACTCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACg                                                                   <  2:222546/139‑1 (MQ=255)
                                           aGAAAAGCTGTTGACGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCATGCCGTGGCCCTAGCAAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACg                                                                   <  4:93799/139‑1 (MQ=255)
                                                 gCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGa                                                             <  1:151816/139‑1 (MQ=255)
                                                  cTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGaa                                                            <  3:249476/139‑1 (MQ=255)
                                                     ttGAGGACAAGCTGGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAgg                                                          <  2:265097/138‑1 (MQ=255)
                                                        aGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAata                                                      <  8:124755/139‑1 (MQ=255)
                                                         ggACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAatat                                                     <  7:44346/139‑1 (MQ=255)
                                                                    aaGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGTAAAAGTCtgatg                                                                                                             <  1:48921/72‑1 (MQ=255)
                                                                    aaGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGTAAAAGTCtgatg                                                                                                             >  2:48921/1‑72 (MQ=255)
                                                                    aaGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGatatat                                           >  3:146694/1‑138 (MQ=255)
                                                                    aaGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGatatat                                           <  6:119692/138‑1 (MQ=255)
                                                                       aCGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAAt                                       <  2:135895/139‑1 (MQ=255)
                                                                         gCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAAtt                                      >  4:208833/1‑138 (MQ=255)
                                                                          cTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTa                                    >  3:222559/1‑139 (MQ=255)
                                                                          cTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTa                                    >  7:87837/1‑139 (MQ=255)
                                                                             aTGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATg                                  <  4:146694/138‑1 (MQ=255)
                                                                                aagaaATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGTTg                               <  3:38495/138‑1 (MQ=255)
                                                                                aagaaATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGTTg                               <  4:222559/138‑1 (MQ=255)
                                                                                aagaaATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGTTg                               <  3:20186/138‑1 (MQ=255)
                                                                                 agaaATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGTTGAt                             <  6:164116/139‑1 (MQ=255)
                                                                                 agaaATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGTTGAt                             <  7:162205/139‑1 (MQ=255)
                                                                                 agaaATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGTTGAt                             <  6:45494/139‑1 (MQ=255)
                                                                                 agaaATCGTTGAGCTTGCCGTTGCCCTAGAAAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGTTGAt                             <  3:64530/139‑1 (MQ=255)
                                                                                   aaaTCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCt                                                                                       >  4:271489/1‑79 (MQ=255)
                                                                                   aaaTCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCt                                                                                       <  3:271489/79‑1 (MQ=255)
                                                                                   aaaTCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGTTGATc                            >  5:97726/1‑138 (MQ=255)
                                                                                     aTCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGTAAAAGTCTGATGTTAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACg                                                 <  5:1394/115‑1 (MQ=255)
                                                                                     aTCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGTAAAAGTCTGATGTTAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACg                                                 >  6:1394/1‑115 (MQ=255)
                                                                                        gTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGTTGATCCatat                       <  2:69008/138‑1 (MQ=255)
                                                                                        gTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGTTGATCCatat                       <  1:75275/138‑1 (MQ=255)
                                                                                        gTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGTTGATCCatat                       <  2:204963/138‑1 (MQ=255)
                                                                                        gTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGTTGATCCatat                       <  5:27079/138‑1 (MQ=255)
                                                                                        gTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGTTGATCCatat                       <  2:236821/138‑1 (MQ=255)
                                                                                        gTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGTTGATCCatat                       <  7:106433/138‑1 (MQ=255)
                                                                                                 gCCGTTGCCCTAGCAAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTg                                                              >  4:44557/1‑90 (MQ=255)
                                                                                                 gCCGTTGCCCTAGCAAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTg                                                              <  3:44557/90‑1 (MQ=255)
                                                                                                 gCCGTTGCCCTAGCAAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGTTGATCCATATTACTATgaga             >  6:10412/1‑139 (MQ=255)
                                                                                                 gCCGTTGCCCTAGCAAAAAAAGGTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGTTGATCCATATTACTATgaga             >  2:184021/1‑139 (MQ=255)
                                                                                                       gCCCTAGCAAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGTTGAt                             <  5:22661/117‑1 (MQ=255)
                                                                                                       gCCCTAGCAAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGTTGAt                             >  6:22661/1‑117 (MQ=255)
                                                                                                            aGCAAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGTTGATCCATATTACTATGAGACAATCTTTCAg  >  8:30373/1‑139 (MQ=255)
                                                                                                            aGCAAAAAAAGTTTGGCAGTAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGTTGATCCATATTACTATGAGACAATCTTTCAg  >  4:243329/1‑139 (MQ=255)
                                                                                                                               |                                                                                                                       
TGCAGAACTGATCGGCCAAGCAAACAGTATAACTGAAATGTCCAGAAAAGCTGTTGAGGACAAGCTTGAAGACGCTAATGAAGAAATCGTTGAGCTTGCCGTTGCCCTAGCAAAAAAAGTTTGGCAGCAAAAGTCTGATGATAAAGAGGCTTTCCTCCTGCTTGTACAACAGGTTATAAACGAAGTGAAGGAATATGACGATATATCAATTTATGTTGATCCATATTACTATGAGACAATCTTTCAG  >  CP006881/1658483‑1658729

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A