Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A3 F76 I1 R1
|
29 |
54.3 |
2299912 |
90.6% |
2083720 |
142.5 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
NC_000913 |
710,489 |
G→C |
A53G (GCT→GGT) |
fur ← |
DNA‑binding transcriptional dual regulator Fur |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | NC_000913 | 710,489 | 0 | G | C | 100.0%
| 186.3
/ NA
| 58 | A53G (GCT→GGT) | fur | DNA‑binding transcriptional dual regulator Fur |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base C (30/28); total (30/28) |
TAACCTTGCCGCAGTCGAGGCAGATCAGGTGATCGTGGTGATGTTGCTGTGTCAGTTCAAATACGGATTTACCGCCTTCAAAATTGTGGCGGGTGACGATACCAGCGTCGTCAAACTGGTTCAGTACGCGATATACCGTAGCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCACTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGGAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGC > NC_000913/710349‑710628
|
taccccagCCGCGGTGGAGGCAGTTGTCGTTATCGTGGAGCTGGCGCTGTGTCAGTTCACATACGCATTTACCGCCTTCAAAATCGTGGCCGGTGACGATACCACCGCCGTCAAACTGGTTCAGTACGCGATATACCGTAccc < 2:566097/136‑1 (MQ=255)
tAACCTTGCCGCAGTCGAGGCAGATCAGGTGATCGTGGTGATGTTGCTGTGTCAGTTCAAATACGGATTTACCGCCTTCAAAATTGTGGCGGGTGACGATACCAGCGTCGTCAAACTGGTTCAGTACGCGATATACCGTAccc > 1:975676/1‑143 (MQ=255)
gcTTGCCGCAGTCGAGGCAGATCAGGTGATCGTGGTGATGGTGCTGTGTCAGTTCAAATACGGATTTACCGCCTTCAAAATTGTGGCGGGTGACGATACCAGCGTCGTCAAACTGGTTCAGTACGCGATATACCGTACCCAGa < 2:177458/142‑1 (MQ=255)
ccTTGCCGCAGTCGAGGCAGATCAGGTGATCGTGGTGATGTTGCTGTGTCAGTTCAAATACGGATTTACCGCCTTCAAAATTGTGGCGGGTGACGATACCAGCGTCGTCAAACCGGTTCAGTACGCGATATAACGTACCCaac > 2:166840/1‑141 (MQ=255)
cTTGCCGCAGTCGAGGCAGATCAGGTGATCGTGGTGATGTTGCTGTGTCAGTTCAAATACGGATTTACCGCCTTCAAAATTGTGGCGGGTGACGATACCAGCGTCGTCAACCTGGTTCAGTACGCGATATACCGTACCCAGAc > 1:94008/1‑143 (MQ=255)
cTTGCCGCAGTCGAGGCAGATCAGGTGATCGTGGTGATGTTGCTGTGTCAGTTCAAATACGGATTTACCGCCTTCAAAATTGTGGCGGGTGACGATACCAGCGTCGTCAAACTGGCTCAGTACGCGATATACCGTACCCAGAc > 1:390484/1‑143 (MQ=255)
ccGCAGTCGAGGCAGATCAGGTGATCGTGGTGATGTTGCTGTGTCAGTTCAAATACGGATTTACCGCCTTCAAAATTGTGGCGGGCGACGATACCAGCGTCGTCAAACTGGTTCAGTACGCGATATACCGTACCCAGACCAAt < 1:381035/143‑1 (MQ=255)
cGCAGTCGAGGCAGATCAGGTGATCGTGGTGATGTTGCTGTGTCAGTTCAAATACGGATTTACCGCCTTCAAAATTGTGGCGGGTGACGATACCAGCGTCGTCACACTGGTGCAGTACGCGATATACCCTACCCAGACCaagt > 2:767484/1‑141 (MQ=255)
cAGTCGAGGCAGATCAGGTGATCGTGGTGATGTTGCTGTGTCAGTTCAAATACGGATTTACCGCCTTCAAAATTGTGGCGGGTGACGATACCAGCGTCGTCAAACTGGTTCAGTACGCGATATACCGTACCCAGACCAATttc < 1:345650/143‑1 (MQ=255)
tggTGATCGGCGTGAGGTTGCTGTGTCACGTCGCATACGGCTGTACCGCCTTCAAAATTGCGGCTGGTGAGGAGACCGGCGTCGTCCAACTGGTTCAGTACGCGAGATACCGTACCCAGACCAATTTCTTCACCCATATCGAt < 2:432600/142‑1 (MQ=255)
aGGTGACCGTGGTGATGTTGCTGTGTCAGTTCAAATACGGAGTTACCGCCTTCAAAATTGTGGCGGGTGACGATAGCAGCGTCGTCAAACTGGTTCAGTACGCGATATACCGTACCCAGACCAATTTCTTCACCCATATCGAt < 2:573377/143‑1 (MQ=255)
aGGTCATCGTGGTGATGCTGCCGTGTCGGTTCGATGACGGATTTACCGCCTTCAAAATTGTGGCGGGTGACGATACCAGCGTCGTCAAACTGGTTCAGTACGCGATATACCGTACCCAGACCAATTTCTTCACCCATATCGAt < 2:772376/143‑1 (MQ=255)
gTGATCGTGGTGATGTTGCTGTGTCAGTTCAAATACGGATTTACCGCCTTCAAAATTGTGGCGGGTGACGATACCAGCGTCGTCAAACTGGTTCAGTACGCGATATACCGTACCCAGACCAATTTCTTCACCCATATCGATCa > 1:791979/1‑143 (MQ=255)
cGTGGTGATGTTGCTGTGTCAGTTCAAATACGGATTTACCGCCTTCAAAATTGTGGCGGGTGACGATACCAGCGTCGTCAAACTGGTTCAGTACGCGATATACCGTACCCAGACCAATTTCTTCACCCATATCGATCAGACGt < 2:246571/143‑1 (MQ=255)
tggtgATGTTGCTGTGTCAGTTCAAATACGGATTTACCGCCTTCAAAAGTGTGGCGGGTGACGATACCAGCGTCGTCAAACTGGTTCAGTACGCGATATACCGTACCCAGACCAATTTCTTCACCCATATCGATCAGACGttt < 2:785355/143‑1 (MQ=255)
gATGTTGCTGTGTCAGTTCAAATACGGATTTACCGCATTCAAAATTGTGGCGGGTGACGATACCAGCGTCGTCAAACTGGTTCAGTACGCGATATACCGTACCCAGACCAATTTCTTCACCCATATCGCTCAGACGGTTGtat > 1:1090634/1‑143 (MQ=255)
cTGTGTCAGTTCAAATACGGATTTACCGCCTTCAAAATTGTGGCGGGTGACGATACCAGCGTCGTCACACTGGTTCAGTACGCGATATACCGTACCCAGACCCATTTCTTCACCCATATCGATACGACGTTTGtatcgctctc > 2:932399/1‑136 (MQ=255)
tgtgTCAGTTCAAATACGGATTTACCGCCTTCAAAATTGTGGCGGGTGACGATACCAGCGTCGTCAAACTGGTTCAGTACGCGATATACCGTACCCAGACCCATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTc > 1:1119067/1‑143 (MQ=255)
gtgtCAGTTCAAATACGGATTTACCGCCTTCAAAATTGTGGCGGGTGACGATACCAGCGTCGTCAAACTGGTTCAGTACGCGATATACCGTACCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTcc < 2:667354/143‑1 (MQ=255)
tgtCAGTTCAAATACGGATTTACCGCCTTCAAAATTGTGGCGGGTGACGATACCAGCGTCGTCAAACTGGTTCAGTACGCGATATACCGTACCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCg < 1:734577/143‑1 (MQ=255)
cAAATACGGATTTACCGCCTTCAAAATTGTGGCGGGTGACGATACCAGCGTCGTCAAACTGGTTCAGTACGCGATATACCGTACCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCACTGACg > 1:701587/1‑143 (MQ=255)
aaTACGGATTTACCGCCTTCAAAATTGTGGCGGGTGACGATACCAGCGTCGTCAAACTGGTTCAGTACGCGATATACCGTACCCAGACCAATTTCTTCACCCCTATCGATCAGACGTTGGTATAAATCTTCCGCACTGaaggg > 2:671620/1‑139 (MQ=255)
aaTACGGATTTACCGCCTTCAAAATTGTGGCGGGTGACGATACCAGCGTCGTCAAACTGGTTCAGTAAGCGATATACCGTACCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAACTCTTACGCACTGACGTg > 2:421051/1‑143 (MQ=255)
aCGGATTTACCGCCTTCAAAATTGTGGCGGGTGACGATACCAGCGTCGTCAAACTGGTTCAGGACGCGAGATACCGTACCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGGATAAATATTCCGCACAGACGTGAtc > 2:537103/1‑142 (MQ=255)
aCGGATTTACCCCCTTCAAAAGTGTGGCGGGTGACGATACCAGCGTCGTCAAACTGGTTCAGTACGCGATATACCGTACCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCACTGACGTGATg < 2:416767/143‑1 (MQ=255)
aCCGCCTTCAAAATTGTGGCGGGTGACGATACCAGCGTCGTCAAACTGGTTCAGTACGCGATATACCGTACCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCACTGACGTGATGGTTGTCCg < 2:770856/143‑1 (MQ=255)
ccGCCTTCAAAATTGTGGCGGGTGACGATACCAGCGTCGTCAAACTGGTTCAGTACGCGATATACCGTACCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCACTGACGTGATGGTTGTCCgg < 2:649563/143‑1 (MQ=255)
cGCCTTCAAAATTGTGGCGGGTGACGATACCAGCGTCGTCAAAATGGTTCAGGACGCGATATACCGTACCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTTTAACTCTTCACCACTTCGGTGATGGTTGTCCgca > 2:519108/1‑141 (MQ=255)
ttCAAAATTGTGGCGGGTGACGATACCAGCGTCGTCAAACTGGTTCAGTACGCGATATACCGTACCCAGACCAATTTCTTCACCCATATCGATAAGACGTTTGTATAAATCTTCCGCACTGACGTGATGGTTGTCCCGCTCCt > 2:1056768/1‑143 (MQ=255)
cAAAATTGTGGCGGGTGACGATACCAGCGTCGTCAAACTGGTTCAGTACGCGATATACCGTACCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCACTGACGTGATGGTTGTCCGGCTCCTga > 2:941435/1‑143 (MQ=255)
tgGCGGGTGACGATACCAGCGTCGTCAAACTGGTTCAGTACGCGATATACCGTACCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCACTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTc < 1:772014/143‑1 (MQ=255)
gCGGGTGACGATACCAGCGTCGTCAAACTGGTTCAGTACGCGATATACCGTACCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCACTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTccg > 1:309085/1‑142 (MQ=255)
gCGGGTGACGATACCAGCGTCGTCAAACTGGTTCAGTACGCGATATACCGTACCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCACTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCa < 1:1023686/143‑1 (MQ=255)
gCGGGTGACGATACCAGCGTCGTCAAACTGGTTCAGTACGCGATATACCGTACCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCACTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCa > 1:399244/1‑143 (MQ=255)
gCGGGTCACGATACCAGCGTCGGCAAACTGGTTCAGTACGCGATATACCGTACCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCACAGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCa < 2:91139/143‑1 (MQ=255)
cGGGTGACGATACCAGCGTCGTCAAACTGGTTCAGTACGCGATATACCGTACCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCACTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAg < 1:552064/143‑1 (MQ=255)
gggTGACGATACCAGCGTCGTCAAACTGGTTCAGTACGCGATATACCGTACCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAACTCTTCCGCACTGACGTGATGGTTGTCCTGCTCCTGAAGAACTTCCAgg > 1:701802/1‑143 (MQ=255)
tgccGATACCCGCGTCGTCAAACTGGTTCAGTACGCGATATACCGTACCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCACTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGAtt < 2:256918/140‑1 (MQ=255)
gACGATACCAGCGTCGTCAAACTGGTTCAGTACGCGATATACCGTACCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCACTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGAttt < 1:1074764/143‑1 (MQ=255)
cGATACCAGCGTCGTCAAACTGGTTCAGTACGCGATATACCGGACCCAGACCAATTTCTTCACCCACATCGATCCGACGTTTGTACAAATCTTCGGCACTCACGCGATGGTTGTCCGCCTCCTGAACAACGTCCCGGActttt > 2:218708/1‑143 (MQ=255)
tACCAGCGTCGTCAAACTGGTTCAGTACGCGATATACCGTACCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCACTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTaaa < 1:247018/143‑1 (MQ=255)
aCCAGCGTCGTCAAACTGGTCCAGGACGCCATATACCGTACCCAGACCAATTTCTTCACCCATATCGATCAGACGTGTGTATAAATCTTCCGCACTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAAc < 1:391749/143‑1 (MQ=255)
cAGCGTGGTCAAACTTGTTCAGTACGCGATATACCGTACCCAGTCCAAGGTCTTCACCCATATCGAGCAGACGTGTGTATAAACCTTCCGCACTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGa < 1:13081/143‑1 (MQ=255)
tcgtcAAACTGGTTCAGTACGCGATATACCGTACCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCACTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGAATTTTAAACGAGAAAg > 2:259677/1‑143 (MQ=255)
gtcAAACTAGTTCAGTACGCGATATACCGTACCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCACTGACGTGATGGTTGTCCGGCTCCCGAAGAACTTCCAGGATTTTTAAACGAGGAAGCg < 1:417324/143‑1 (MQ=255)
tcAAACTGGTTCAGTACGCGATATACCGTACCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCCCTGACGTGATGGTTGTCCGGCTCATGAAGAACTTCCAGGAGTTTTAAGCGCAGAAGCGt > 2:858897/1‑143 (MQ=255)
tcAAACTGGTTCAGTACGCGATATACCGTACCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCACTGCCGTGACGGCTGTCGGGCTCCTGACGAATAACTAGATTGGTTAAACGAGGAAGCGt > 1:1021545/1‑143 (MQ=255)
tcAAACTGGTTCAGTACGCGATATACCGTACCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCACTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGGAAGCGt > 1:693817/1‑143 (MQ=255)
aaCTGGTTCAGTACGCGATATACCGTACCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCACTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGGAAGCGTTAc > 1:681228/1‑143 (MQ=255)
tgtttCACTACGCGATATACCGTACCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCTCTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGGAAGCGTTACttt < 2:1119087/140‑1 (MQ=255)
ttCAGTACGCGATATACCGTACCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCACTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGGAAGCGTTACTTTAAg > 2:618772/1‑143 (MQ=255)
ttCAGTACGCGATATACCGTACCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCACTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTATTAAACGAGGAAGCGTTACTTTCAg > 2:407954/1‑143 (MQ=255)
cAGTACGCGATATACCGTACCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCACTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGGAAGCGTTACTTTCAGGc < 1:123876/143‑1 (MQ=255)
gTACGCGATATACCGTACCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCACTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGGAAGCGTTACTTTCAGGCCa < 1:616076/143‑1 (MQ=255)
tACGCGATATACCGTACCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCACTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGGACGCGTTACTTTCAGGCCAg > 2:1107211/1‑143 (MQ=255)
aCGCGATATACCGTACCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCACTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGGAAGCGTTACTTTCAGGCCAGc > 2:165738/1‑143 (MQ=255)
gATATACCGTACCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCACTGACGTGATGGTTGTCCGGCTCCTGAAGAAGTTCCAGGATTTTTGAAGGAGGAAGGGGTGCTTGCAGGGCAGcgggc > 1:123919/1‑139 (MQ=255)
gATATACCGTACCCAGACCAAGTTCTTCACCCAGATCGATCAGACGTTTGTATAAATCTTCCGCACTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGGAAGCGTTACTTTCAGGCCAGctttc < 2:325569/143‑1 (MQ=255)
aCCGTACCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCACTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGGAAGCGTTACTTTCAGGCCAGCTTTCTTTAg > 1:125556/1‑143 (MQ=255)
gTACCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCACTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGGAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGc < 1:516790/143‑1 (MQ=255)
|
TAACCTTGCCGCAGTCGAGGCAGATCAGGTGATCGTGGTGATGTTGCTGTGTCAGTTCAAATACGGATTTACCGCCTTCAAAATTGTGGCGGGTGACGATACCAGCGTCGTCAAACTGGTTCAGTACGCGATATACCGTAGCCAGACCAATTTCTTCACCCATATCGATCAGACGTTTGTATAAATCTTCCGCACTGACGTGATGGTTGTCCGGCTCCTGAAGAACTTCCAGGATTTTTAAACGAGGAAGCGTTACTTTCAGGCCAGCTTTCTTTAGGGC > NC_000913/710349‑710628
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
