Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A17 F61 I1 R1 22 65.1 2541758 91.4% 2323166 141.8

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation annotation gene description
RA NC_000913 4,341,824 T→G intergenic (‑196/‑87) melR ← / → melA DNA‑binding transcriptional dual regulator MelR/alpha‑galactosidase

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009134,341,8240TG98.6% 221.9 / NA 72intergenic (‑196/‑87)melR/melADNA‑binding transcriptional dual regulator MelR/alpha‑galactosidase
Reads supporting (aligned to +/- strand):  ref base T (0/1);  new base G (35/35);  total (36/36)
Fisher's exact test for biased strand distribution p-value = 1.00e+00
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00

GAGTGGGAGCACGGTTTTCACCCTCTTCCCAGAGGGGCGAGGGGACTCTCCGAGTATCATGAGGCCGAAAACTCTGCTTTTCAGGTAATTTATTCCCATAAACTCAGATTTACTGCTGCTTCACGCAGGATCTGAGTTTATGGGAATGCTCAACCTGGAAGCCGGAGGTTTTCTGCAGATTCGCCTGCCATGATGAAGTTATTCAAGCAAGCCAGGAGATCTGCATGATGTCTGCACCCAAAATTACATTTATCGGCGCTGGTTCGACGATTTTCG  >  NC_000913/4341687‑4341962
                                                                                                                                         |                                                                                                                                          
gAGTGGGAGCACGTTCTTCACCCTCTTCCCAGAGGGGCGAGGGGACTCTCCGAGTATCATGAGGCCGAAAACTCTGCTTTTCAGGTAATTTATTCCCATAAACTCAGATTTACTGCTGCTTCACGCAGGATCTGAGTGTATgg                                                                                                                                       <  1:685825/143‑1 (MQ=255)
  gTGGGGGGACTGTGTTCGCTCGCTTCCCCGAGGGGCGAGGGGACTCTCCGAGTATCATGAGGCCGAAAACTCTGCTTTTCAGGTAATTTATTCCCATAAACTCAGATTTACTGCTGCTTCACGCAGGATCTGAGTGTATGGGa                                                                                                                                     <  2:1056614/143‑1 (MQ=255)
   tGGGAGCACGGTTTTCACCCTCTTCCCAGAGGGGCGAGGGGACTCTCCGAGTATCATGAGGCCGAAAACTCTGCTTTTCAGGTAATTTATTCCCATAAACTCAGATTTCCTGCTGCTTCACTCAGGATCTGCGGCTATGGCaa                                                                                                                                    >  2:214070/1‑143 (MQ=255)
         cACGGTTTTCACCCTCTTCCCAGAGGGGCGAGGGGACTCTCCGAGTATCATGAGGCCGAAAACTCTGCTTTTCAGGGAATTTATTCCCATAAACTCAGATTTCCTGCTGCTTCACGCAGGATCCGCGGGTATAGGAATGCttc                                                                                                                              >  1:600704/1‑141 (MQ=255)
           cGGTTTTCACCCCCTTCCCAGAGGGGCGAGGGGACTCTCCGAGTATCATGAGGCCGAAAACTCTGCTTTTCAGGTAATTTATTCCCATAAACTCAGATTTACTGCTGCTTCACGCAGGATCTGAGTGTATGGGAATGCTCAAc                                                                                                                            <  1:1045752/143‑1 (MQ=255)
           cGGTTTTCACCCCCTCCCCCGAGGGGCGAGGGGACTCTCCGAGTATCATGAGGCCGAAAACTATGCTTTTCAGGTAATTTATTCCCATAAACTCAGATTTACTGCTGCTTCACGCAGGATCTGAGTGTATGGGAATGCTCAAc                                                                                                                            <  1:87968/143‑1 (MQ=255)
             gTTTTCACCCTCTTCCCAGAGGGGCGAGGGGACTCTCCGAGTATCATGAGGCCGAAAACTCTGCTTTTCAGGTAATTTATTCCCATAAACTCAGATTTACTGCTGCTTCACGCAGGATCTGCGTGTATGGGAATGCTCAACCt                                                                                                                          >  1:278569/1‑143 (MQ=255)
             gTTGTCACCCTCTTCCCAGAGGGGCGAGGGGACTCTCCGAGTATCATGAGGCCGAAAACTCTGCTTTTCAGGTAATTTATTCCCATAAACTCAGATTTACTGCTGCTTCACGCAGGATCTGAGTGTATGGGAATGCTCAACCt                                                                                                                          <  2:165014/143‑1 (MQ=255)
                 tCACCCTCTTCCCAGAGGGGCGAGGGGACTCTCCGAGTATCATGAGGCCGAAAACTCTGCTTTTCAGGTAATTTATTCCCATAAACTCAGATTTACTGCTGCTTCACGCAGGATCTGAGTGTATGGGAATGCTCAACCTGGaa                                                                                                                      <  1:1065822/143‑1 (MQ=255)
                    cccTCTTCCCAGAGGGGCGAGGGGACTCTCCGAGTATCATGAGGCCGAAAACTCTGCTTTTCAGGTAATTTATTCCCATAAACTCAGATTTACTGCTGCTTCACGCAGGATCTGAGTGTATGGGAATGCTCGACCTGGAGGcc                                                                                                                   >  1:1013778/1‑143 (MQ=255)
                     ccTCTTCCCAGAGGGGCGAGGGGACTCTCCGAGTATCCTGAGGCCGAAAACTCTGCTTTTCAGGTAATTTATTCCCATAAACTCAGATTTACTGCTGCTTCCCGCAGGATCTGAGCGTCTGGGAATGCTCAACCTGGAAGCCg                                                                                                                  >  2:158432/1‑143 (MQ=255)
                     ccTCTTCCCAGAGGGGCGAGGGGACTCTCCGAGTATCATGAGGCCGAAAACTCTGCTTTTCAGGTAATTTATTCCCATAAACTCAGATTTACTGCTGCTTCACGCAGGATCTGAGTGTATGGGAATGCTCAACCTGGAAGCCg                                                                                                                  >  2:866191/1‑143 (MQ=255)
                     ccTCTTCCCAGAGGGGCGAGGGGACTCTCCGAGTATCATGAGGCCGAAAACTCTGCTTTTCAGGTAATTTATTCCCATAAACTCAGATTTACTGCTGCTTCACGCAGGATCTGAGTGTATGGGAATGCTCAACCTGGAAGCCg                                                                                                                  >  2:1017752/1‑143 (MQ=255)
                      ctctTCCCAGAGGGGCGAGGGGACTCTCCGAGTATCATGAGGCCGAAAACTCTGCTTTTCAGGTAATTTATTCCCATAAACTCAGATTTACTGCTGCTTCACGCAGGATCTGAGTGTATGGGAATGCTCAACCTGGAAGCCgg                                                                                                                 <  1:886584/143‑1 (MQ=255)
                       tctTCCCAGAGGGGCGAGGGGACTCTCCGAGTATCATGAGGCCGAAAACTCTGCTTTTCAGGTAATTTATTCCCATAAACTCAGCTTTCCTGCTGCTTCCCGCAGGATCTGAGTGTATGGGAATTCTCAGCCTCGACGCCGGa                                                                                                                >  1:165278/1‑143 (MQ=255)
                       tcgtgccAGGGGGGGGGGGGGTCTCTCCGAGTATCATGAGGGCGAAAAGTCTGCTTTTCAGGTAATTTATTCCCATAAACTCAGATTTACTGCTGCTTCACGCAGGATCTGAGTGTATGGGAATGCTCAACCTGGAAGCCGGa                                                                                                                <  2:883600/138‑1 (MQ=255)
                        ctTCCCAGAGGGGCGAGGGGACTCTCCGAGTATCATGAGGCCGAAAACTCTGCTTTTCAGGTAATTTATTCCCATAAACTCAGATTTACTGCTGCTTCACGCAGGATCTGAGTGTATGGGAATGCTCAACCTGGAAGCCGGAg                                                                                                               <  1:321489/143‑1 (MQ=255)
                            ccAGAGGGGCGAGGGGACTCTCCGAGTATCATGAGGCCGAAAACTCTGCTTTTCAGGTAATTTATTCCCATAAACTCAGATTTACTGCTGCTTCACGCAGGATCTGAGTGTATGGGAATGCTCAACCTGGAAGCCGGAGGttt                                                                                                           >  1:1004290/1‑143 (MQ=255)
                              agagGGGCGAGGGGACTCTCCGAGTATCATGAGGCCGAAAACTCTGCTTTTCAGGTAATTTATTCCCATAAACTCAGATTTACTGCTGCTTCACGCAGGATATGAGCGCACGGGAATGCTCAACCTGGAGGCCGGAGGTTTTc                                                                                                         >  2:1227653/1‑143 (MQ=255)
                                agGGGCGAGGGGACTCTCCGAGTATCATGAGGCCGAAAACTCTGCTTTTCAGGTAATTTATTCCCATAAACTCAGATTTACTGCTGCTTCACGCAGGATCTGAGTGTATGGGAATGCTCAACCTGGAAGCCGGAGGTTTTCTg                                                                                                       <  1:1068023/143‑1 (MQ=255)
                                     ctaGGTGACTTTCCGAGTATCATTAGGCCGAAAACTCTGCTTTTCAGGTAATTTATTCCCATAAACTCAGATTTACTGCTGCTTCACGCAGGATCTGAGTGTATGGGAATGCTCAACCTGGAAGCCGGAGGTTTTCTGCAGAt                                                                                                  <  1:573078/141‑1 (MQ=255)
                                     cGAGGGGACTCTCCGAGTATCATGAGGCCGAAAACTCTGCTTTTCAGGTAATTTATTCCCATAAACTCAGATTTACTGCTGCTTCACGCAGGATCTGAGTGTATGGGAATGCTCAACCTGGAAGCCGGAGGTTTTCTGCAGAt                                                                                                  >  2:726186/1‑143 (MQ=255)
                                     cGAGGGGACTCTCCGAGTATCATGAGGCCGAAAACTCTGCTTTTCAGGTAATTTATTCCCATAAACTCAGATTTACTGCTGCTTCACGCAGGATCTGAGTGTATGGGAATGCTCAACCTGGAAGCCGGAGGTGTTCTGGAGAt                                                                                                  >  2:726171/1‑143 (MQ=255)
                                      gAGGGGACTCTCCGAGTATCATGAGACCGAAAACACTGCGTTGCAGGTAATTTATTCCCAAAAACTAAGAATTACTGCTGCTTCCCGCAGGAACTGCATGTAGGGGAATGCTCAAGCTCGACACCCGAGCTTTTCtcgacatt                                                                                                 >  2:1191976/1‑136 (MQ=255)
                                         gggCCTCCCCGAGCATCATGAGGCCGAAAACTCTGCTTTTCAGGTAATTTCTTCCCATAAACTCAGATTTACTGCTGCTTCACGCAGGATCTGAGTGTATGGGAATGCTCAACCTGGAAGCCGGAGGTTTTCTGCAGATTCGc                                                                                              <  1:876472/143‑1 (MQ=255)
                                         gggACTCTCCGAGTATCATGAGGCCGAAAACTCTGCTTTTCAGGTAATTTATTCCCATAAACTCAGATTTACTGCTGCTGCACGCAGGATCTGAGTGTATGGGAATGCTCAACCTGGAAGCCGGAGGTTTTCTGCAGATTCGc                                                                                              >  2:445450/1‑143 (MQ=255)
                                           gACTCTCCGAGTATCATGAGGCCGAAAACTCTGCTTTTCAGGTAATTTATTCCCATAAACTCAGATTTACTGCTGCTTCACGCAGGAGCTGAGTGTATGGGAATGCTCAACCTGGAAGCCGGGGGTTTTCTGCAGATTCGCCt                                                                                            >  1:247947/1‑143 (MQ=255)
                                               ctcCGAGTATCATGAGGCCGAAAACTCTGCTTTTCAGGTAATTTATTCCCATAAACTCAGATTTACTGCTGCTTCACGCAGGATCTGAGTGTATGGGAATGCTCAACCTGGAAGCCGGAGGTTTTCTGCAGATTCGCCTGCCa                                                                                        >  2:332692/1‑143 (MQ=255)
                                               atcCGAGTATCATGAGGCCGAAAACTCTGCTTTTCAGGTAATTTATTCCCATAAACTCAGATTTACTGCTGCTTCACGCAGGATCTGAGTGTATGGGAATGCTCAACCTGGAAGCCGGAGGTTTTCTGCAGATTCGCCTGCCa                                                                                        <  1:1116478/142‑1 (MQ=255)
                                                  cGAGTATCATGAGGCCGAAAACTCTGCTTTTCAGGTAATTTATTCCCATAAACTCAGATTTACTGCTGCTTCACGCAGGATCTGAGTGTATGGGAATGCTCAACCTGGAAGCCGGAGGTTTTCTGCAGATTCGCCTGCCatga                                                                                     >  1:1075813/1‑143 (MQ=255)
                                                   gAGTATCATGAGGCCGAAAACTCTGCTTTTCAGGTAATTTATTCCCATAAACTCAGATTTACTGCTGCTTCACGCAGGATCTGAGTGTATGGGAATGCTCAACCTGGAAGCCGGAGGTTTTCTGCAGATTCGCCTGCCatgat                                                                                    <  2:131436/143‑1 (MQ=255)
                                                      tATCATGAGGCCGAAGACTCTGCTTTTCGGGTAATTTGTTCCCATAAACTCAGATTTACTGCTGCTGCACGCAGGATCTGAGTGTATGGGAATGCTCAACCTGGAAGCCGGAGGTTTTCTGCAGATTCGCCTGCCATGATGaa                                                                                 <  2:234728/143‑1 (MQ=255)
                                                       aTCATGAGGCCGAAAACTCTGCTTTTCAGGTAATTTAGTCCCATAATCTCAGATTTACTGCTGCTTCACGCAGGATCTGCGTGTATGGGAATGCTCGACCTGGAAGCCGGAGGTTTTCTGCAGATTCGCCTGCCATGATGAAg                                                                                <  2:82219/143‑1 (MQ=255)
                                                       aTCATGAGGCCGAAAACTCTGCTTGTCAGGTCATTTATTCCCATAAACTCAGATTTACTGCTGCTTCACGCAGGATCTGAGTGTATGGGAATGCTCAACCTGGAAGCCGGAGGTTTTCTGCAGATTCGCCTGCCATGATGAAg                                                                                <  1:171461/143‑1 (MQ=255)
                                                        tCATGAGGCCGAAAACCCTGCTTGTCAGGTAATTTATTCCCATAAACGCAGATTTACTGCTGCTTCACGCAGGATCTGAGTGTATGGGAATGCTCAACCTGGAAGCCGGAGGTTTTCTGCAGATTCGCCTGCCATGATGAAGt                                                                               <  1:688660/143‑1 (MQ=255)
                                                             aGGCCGAAAACTCTGCTTTTCAGGTAATTTATTCCCATAAACTCAGATTTACTGCTGCTTCACGCAGGATCTGAGTGTATGGGAATGCTCAACCTGGAAGCCGGAGGTTTTCTGCAGATTCGCCTGCCATGATGAAGTTATTc                                                                          <  2:393229/143‑1 (MQ=255)
                                                               gCCGAAAACTCTGCTTTTCAGGTAATTTATTCCCATAAACTCAGATTTACTGCTGCTTCACGCAGGATCTGAGTGTATGGGAATGCTCAACCTGGAAGCCGGAGGTTTTCTGCAGATTCGCCTGCCATGATGAAGTTATTcaa                                                                        <  2:244557/143‑1 (MQ=255)
                                                                ccGAAAACTCTGCTTTTCAGGTAATTTATTCCCATAAACTCAGATTTACTGCTGCTTCACGCAGGATCTGAGTGTATGGGAATGCTCAACCTGGAAGCCGGAGGTTTTCTGCAGATTCGCCTGCCATGATGAAGTTATTcaag                                                                       <  1:968968/143‑1 (MQ=255)
                                                                 cGAAAACTCTGCTTTTCAGGTAATTTATTCCCATAAACTCAGATTTACTGCTGCTTCACGCAGGATCTGAGTGTATGGGAATGCTCAACCTGGAAGCCGGAGGTTTTCTGCATATTCGCCTGCCATGATGAAGTTATTcaagc                                                                      >  1:352476/1‑143 (MQ=255)
                                                                  gAAAACTCTGCTTTTCAGGTAATTTATTCCCATAAACTCAGATTTACTGCTGCTTCACGCAGGATCTGAGTGTATGGGAATGCTCAACCTGGAAGCCGGAGGTTTTCTGCAGATTCGCCTGCCATGATGAAGTTATTcaagca                                                                     >  2:974534/1‑143 (MQ=255)
                                                                     aaCTCTGCTGTTCAGGTAATTTATTCCCATAAACTCAGATTTACTGCTGCTTCACGCAGGATCTGAGTGTATGGGAATGCTCAACCTGGAAGCCGGAGGTTTTCTGCAGATTCGCCTGCCATGATGAAGTTATTCaagcaagc                                                                  <  1:548338/143‑1 (MQ=255)
                                                                      aCTGTGCGTTGCAGGGAATTTGTTCCCAGACACTCAGATTTACTGCTGCTTCACGCAGGATCTGAGTGTATGGGAATGCTCAACCTGGAAGCCGGAGGTTTTCTGCAGATTCGCCTGCCATGATGAAGTTATTCAAGCAAGcc                                                                 <  1:1169109/143‑1 (MQ=255)
                                                                        tctGCTTTGCAGGTAATTTATTCCCTTAAACTCAGATTTACTGCTGCTTCACGCAGGATCTGAGTGTATGGGAATGCTCAACCTGGAAGCCGGAGGTTTTCTGCAGATTCGCCTGCCATGATGAAGTTATTCAAGCAAGCCAg                                                               <  2:1045191/143‑1 (MQ=255)
                                                                         ctGCTTTTCAGGTAATTTATTCCCATAAACTCAGATTTACTGCTGCTTCACGCAGGCTCTGAGTGTATGGGAATGCTCAACCTGGAAGCCGGAGGTTTTCTGCAGATTCGCCTGCCATGAGGACGGTATTCAAGCAAGCCAgg                                                              >  2:292010/1‑143 (MQ=255)
                                                                         ctGCTTTTCAGGTAATTTATTCCCATAAACTCAGATTTACTGCTGCTTCACGCAGGATCTGAGTGTATGGGAATGCTCCACCTGGAAGCCGGAGGTTTTCTGCAGATTCGCCTGCCATGATGAAGTTATTCAAGCGAGCCAgg                                                              >  2:396922/1‑143 (MQ=255)
                                                                          tGCTTTTCAGGTAATTTATTCCCATAAACTCAGATTTACTGCTGCTTCACGCAGGATCTGAGTGTATGGGAATGCTCACCCTGGAAGCCGGAGGTTTTCTGCAGATTCGCCTGCCATGATGAAGTTATCCAAGCAAGCCAGga                                                             >  1:521153/1‑143 (MQ=255)
                                                                             ttttCAGGTAATTTATTCCCATAAACTCAGATTTACTGCTGCTTCACGCAGGATCTGAGTGTATGGGAATGCTCAACCTGGAAGCCGGAGGTTTTCTGCAGATTCGCCTGCCATGATGAAGTTATTCAAGCAAGCCAGgagct                                                          >  1:506714/1‑141 (MQ=255)
                                                                               gccAGGTAATTTATTCCCATAGACTCAGATGTACTGCTGCTTCACGCAGGATCTGAGTGTATGGGAATGCTCAACCTGGAAGCCGGAGGTTTTCTGCAGAGTCGCCTGCCATGATGAAGTTATTCAAGCAAGCCAGGAGATCt                                                        <  2:165278/141‑1 (MQ=255)
                                                                                 cAGGTAATTTATTCCCATAAACTCAGATTTACTGCTGCTTCACGCAGGATCTGAGTGTATGGGAATGCTCAACCTGGAAGCCGGAGGTTTTCTGCAGATTCGCCTGCCATGATGAAGTTATTCAAGCAAGCCAGGAGATCTGc                                                      <  2:607369/143‑1 (MQ=255)
                                                                                 cAGGTAAGTTATTGCCATAAACTCAGATTTACTGCTGCTTACCGCGGGCTCTGAGTGTATGGGAATGCTCAACCTGGAAGCCGGAGGTTTTCTGCAGATTCGCCTGCCATGATGAAGTTATTCAAGCAAGCCAGGAGATCTGc                                                      <  1:1199706/143‑1 (MQ=255)
                                                                                  aGGTAATTTATTCCCATAAACTCAGATTTACTGCTGCTTCACGCAGGATCTGAGTGTATGGGAATGCTCAACCTGGAAGCCGGAGGTTTTCTGCAGATTCGCCTGCCATGATGAAGTTATTCAAGCAAGCCAGGAGATCTGCa                                                     >  2:61923/1‑143 (MQ=255)
                                                                                     tAATTTATTCCCATAAACTCAGATTTACTGCTGCTTCACGCAGGATCTGAGTGTATGGGAATGCTCAACCTGGAAGCCGGAGGTTTTCTGCAGATTCGCCTGCCATGATGAAGTTATTCAAGCAAGCGAGGCGATCTCCatga                                                  >  2:957799/1‑143 (MQ=255)
                                                                                     tAAGTTCTTCCCATAAACTCAGATTTACCGCTGCTTCACGCAGGATCTGAGTGTATGGGAATGCTCAACCTGGAAGCCGGAGGTTTTCTGCAGATTCGCCTGCCATGATGAAGTTATTCAAGCAAGCCAGGAGATCTGCatga                                                  <  1:825302/143‑1 (MQ=255)
                                                                                       aTTTATTCCCATAAACTCAGATTTACTGCTGCTTCACGCAGGATCTGAGTGTATGGGAATGCTCAACCTGGAAGCCGGAGGTTTTCTGCAGATTCGCCTGCCATGATGAAGTTATTCAAGCAAGCCAGGAGATCTGCatgatg                                                >  2:586984/1‑143 (MQ=255)
                                                                                        tttATTCCCATCAACTCAGATTTACTGATGCCACCCGCAGGATCTGCGTGTATGGGAATGCTCAGCATGGAAGCAGGACGTTTTGTGCAGATGCGCCAGTCAATTTGACGCTTTTCAAGCAAGCCAGGAGATCTGCATGATGt                                               <  2:767656/143‑1 (MQ=255)
                                                                                         ttATTCCCATAAACTCAGATTTACTGCTGCTTCACGCAGGATCTGAGTGTATGGGAATGCTCAACCTGGAAGCCGGAGGTTTTCTGCAGATTCGCCTGCCATGATGAAGTTGTTCAAGCAAGCCAGGCGATCTGCATGATGTc                                              >  1:961730/1‑143 (MQ=255)
                                                                                         ttATTCCCATAAACTCAGATTTACTGCTGCTTCACGCAGGATCTGAGTGTATGGGAATGCTCAACCTGGAAGCCGGAGGTTTTCTGCAGATTCGCCTGCCATGATGAAGTTATTCAAGCAAGCCAGGAGATCTGCATGATGTc                                              >  1:208263/1‑143 (MQ=255)
                                                                                           aTTCCCATAAACTCAGATTTACTGCTGCTTCACGCAGGATCTGAGTGTATGGGAATGCTCAACCTGGAAGCCGGAGGTTTTCTGCAGATTCGCCTGCCATGATGAAGTTATTCAAGCAAGCCAGGAGATCTGCATGAGGTCTg                                            >  2:164261/1‑143 (MQ=255)
                                                                                                cATAATCTCAGATTTACTGCTTCTTCACGCAGGATCTGAGTTTATGTGAATGCTCAACCTGGAAGCCGGAGGTTTTCTGCAGATTCGCCTGCCATGATGAAGTTATTCAAGCAAGCCAGGAGATCTGCATGATGTCTGCAccc                                       <  1:109562/143‑1 (MQ=255)
                                                                                                cATAAACTCAGATTTACTGCTGCTTCACGCAGGATCTGAGTGTATGGGAATGCTCAACCTGGAAGCCGGAGGTCTTCTGCAGATTCGCCTGCCATGCTGAAGTTCTTCCAGCCAGCCAGGCGATCTGCCTGATGTCTGCcccc                                       >  1:2719/1‑143 (MQ=255)
                                                                                                         aGATTTACTGCTGCTTCACGCAGGATCTGAGTGTATGGGAATGCTCAACCTGGAAGCCGGAGGTTTTCTGCAGATTCGCCTGCCATGATGAAGTTATTCAAGCAAGCCAGGAGATCTGCATGATGTCTGCACCCAAAATTACa                              >  1:786476/1‑143 (MQ=255)
                                                                                                            tttACTGTTGCTGCACGCGGGATCTGGGTGTATGGGAATGCTCAGCCTGGTAGCCGGAGGTTTTCTGCAGATTCGCCTGCCAGTATGAAGTTATTCAAGCAAGCCAGGAGATCTGCATGATGTCTGCACCCAAAATTACAttt                           <  2:1024149/143‑1 (MQ=255)
                                                                                                             ttACTGCTGCTTCACGCAGGATCTGAGTGTATGGGAATGCTCAACCTGGAAGCCGGAGGTTTTCTGCAGATTCGCCTGCCATGATGAAGTTATTCAAGCAAGCCAGGAGATCTGCATGATGTCTGCACCCAAAATTACATTTa                          >  1:281454/1‑143 (MQ=255)
                                                                                                               aCTGCTGCTTCACGCAGGATCTGAGTGTATGGGAATGCTCAACCTGGAAGCCGGAGGTTTTCTGCAGATTCGCCTGCCATGCTGAAGTTATTCAAGCAAGCCAGGAGATCTGCATGATGTCTGCACCCAAAATTACATTTATc                        <  1:866191/143‑1 (MQ=255)
                                                                                                                            gCAGGATCTGAGTGTATGGGAATGCTCAACCTGGAAGCCGGAGGTTTTCTGCAGATGCGCCTGCCATGATGAAGTTATTCAAGCAAGCCAGGAGATCTGCATGATGTCTGCACCCAAAATTACATTTATCGGCGCTGGTTcga           >  1:740393/1‑143 (MQ=255)
                                                                                                                              aGGATCTGAGTGTATGGGAATGCTCAACCTGGAAGCCGGAGGTTTTCTGCAGATTCGCCTGCCATGATGAAGTTATTCAAGCAAGCCAGGAGATCTGCATGATGTCTGCACCCAAAATTACATTTATCGGCGCTGGTTcgacg         >  1:1173390/1‑143 (MQ=255)
                                                                                                                               ggATCTGAGTGTATGGGAATGCTCAACCTGGAAGCCGGAGGTTTTCTGCAGATTCGCCTGCCATGATGAAGTTATTCAAGCAAGCCAGGAGATCTGCATGATGTCTGCACCCAAAATTACATTTATCGGCGCTGGTTcgacga        <  2:1101115/143‑1 (MQ=255)
                                                                                                                                gagcTGAGTGTATGGGAATGCTCAACCTGGAAGCCGGAGGTTTTCTGCAGATTCGCCTGCCATGATGAAGTTATTCAAGCAAGCCAGGAGATCTGCATGATGTCTGCACCCAAAATTACATTTATCGGCGCTGGTTCGACGAt       <  2:842039/140‑1 (MQ=255)
                                                                                                                                gATCTGAGTGTATGGGAATGCTCAACCTGGAAGCCGGAGGTTTTCTGCAGATTCGCCTGCCATGATGAAGTTATTCAAGCAAGCCAGGAGATCTGCATGATGTCTGCACCCAAAATTACATTTATCGGCGCTGGTTCGACGAt       >  1:637900/1‑143 (MQ=255)
                                                                                                                                    ttaGTGTATGGGAATGCTCAACCTGGAAGCCGGAGGTTTTCTGCAGATTCGCCTGCCATGATGAAGTTCTTCTACCAAGCCAGGAGATCTGCATGATGTCTGCACCCAAAATTACATTTATCGGCGCTGGTTCGACGATTTTc   <  1:728161/141‑1 (MQ=255)
                                                                                                                                    tGAGTGTATGGGAAGGCGCAACCTGGAAGCCGGAGGTTTTCTGCAGATTCGCCTGCCATGATGAAGTTATTCAAGCAAGCCAGGAGATCTGCATGATGTCTACACCCAAAATTACATTTATCGGCGCTGGTTCGACGATTTTc   <  1:214070/143‑1 (MQ=255)
                                                                                                                                     gAGTGTATGGGAATGCTCAACCTGGAAGCCGGAGGTTTTCTGCAGATTCGCCTGCCATGATGAAGTTATTCAAGCAAGCCAGGAGATCTGCATGATGTCTGCACCCAAAATTACATTTATCGGCGCTGGTTCGACGATTTTCg  >  1:71490/1‑143 (MQ=255)
                                                                                                                                         |                                                                                                                                          
GAGTGGGAGCACGGTTTTCACCCTCTTCCCAGAGGGGCGAGGGGACTCTCCGAGTATCATGAGGCCGAAAACTCTGCTTTTCAGGTAATTTATTCCCATAAACTCAGATTTACTGCTGCTTCACGCAGGATCTGAGTTTATGGGAATGCTCAACCTGGAAGCCGGAGGTTTTCTGCAGATTCGCCTGCCATGATGAAGTTATTCAAGCAAGCCAGGAGATCTGCATGATGTCTGCACCCAAAATTACATTTATCGGCGCTGGTTCGACGATTTTCG  >  NC_000913/4341687‑4341962

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A