Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A11 F83 I0 R1 128 58.1 2217184 91.0% 2017637 142.6

Breseq alignment

BRESEQ :: Evidence
Predicted mutation
evidence seq id position mutation freq annotation gene description
RA NC_000913 1,764,427 G→A 100% intergenic (‑41/+286) sufA ← / ← rydB iron‑sulfur cluster insertion protein SufA/small regulatory RNA RydB

Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*NC_0009131,764,4270GA100.0% 211.4 / ‑6.7 68intergenic (‑41/+286)sufA/rydBiron‑sulfur cluster insertion protein SufA/small regulatory RNA RydB
Reads supporting (aligned to +/- strand):  ref base G (0/0);  major base A (33/33);  minor base C (1/1);  total (34/34)
Rejected as polymorphism: E-value score below prediction cutoff.
Rejected as polymorphism: Frequency below/above cutoff threshold.
Rejected as polymorphism: Variant not supported by required number of reads on each strand.

TGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGTGTCAGCGTTAAGCCTTGCCAGGCGAAATCTTGTGGGTTAAAGGTTCCTGAATGCATGTCCATCGATTTACCTCACTTCATCGCTTTCAGCGTATAACAGCATGTTAGTGATAATGATTATCAGTTCAACCCAGCAAACGCAGGGGCTTTACCGTAAAACATGCTTTTTGCCTGCTTTTAATAAGCATAGACCCTGATGTGTGGGTTAACAGGCACGCTAAGAATTAGGTATCTCATTGTTA  >  NC_000913/1764288‑1764565
                                                                                                                                           |                                                                                                                                          
tGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGTGTCAGCGTTAAGCCTTGCCAGGCGAAATCTTGTGGGTTAAAGGTTCCTGAATGCATGTCCATCGATTTACCTCACTTCATCGCTTTCAGCGTATAACAGCATATTa                                                                                                                                         <  2:248566/143‑1 (MQ=255)
 gCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGTGTCAGCGTTAAGCCTTGCCAGGCGAAATCTTGTGGGTTAAAGGTTCCTGAATGCATGTCCATCGATTTACCTCACTTCATCGCTTTCAGCGTATAACAGCATATTAg                                                                                                                                        >  2:851707/1‑143 (MQ=255)
  ccaccaGCTCACGGATGTGTATCGCCGCTGCGGGTGTCAGCGTTAAGCCTTGCCAGGCGAAATCTTGTGGGTTAAAGGTTCCTGAATGCATGTCCATCGATTTACCTCACTTCATCGCTTTCAGCGTATAACAGCATCTTAGt                                                                                                                                       >  1:393286/1‑143 (MQ=255)
  ccaccaGCTCACGGATGTGTATCGCCGCTGCGGGTGTCAGCGTTAAGCCTTGCCAGGCGAAATCTTGTGGGTTAAAGGTTCCTGAATGCATGTCCATCGATTTACCTCACTTCATCGCTTTCAGCGTATAACAGCATATTAGt                                                                                                                                       <  2:317208/143‑1 (MQ=255)
   caccaGCTCACGGATGTGTATCGCCGCTGCGGGTGTCAGCGTTAAGCCTTGCCAGGCGAAATCTTGTGGGTGAAAGGTTCCTGAATGCATGTCCATCGATTTACCTCACTTCATCGCTTTCAGCGTATAACAGCCTATTAGTg                                                                                                                                      >  2:264545/1‑143 (MQ=255)
      caGCTCACGGATGGGTATCGCCGCTGCGGGTGTCAGCGTTAAGCCTTGCCAGGCGAAATCGTGTGGGTTAAAGGTTCCTGAATGCATGTCCATCGATTTACCTCACTTCATCGCTTTCAGCGTATAACAGCATATTAGTGATa                                                                                                                                   <  2:50343/143‑1 (MQ=255)
             cGGATGTGTATCGCCGCTGCGGGTGTCAGCGTTAAGCCTTGCCAGGCGAAATCTTGTGGGTTAAAGGTTCCTGAATGCATGTCCATCGATTTACCTCACTTCATCGCTTTCAGCGTATAACAGCATATTAGTGATAATGATTa                                                                                                                            <  1:491914/143‑1 (MQ=255)
               gATGTGTATCGCCGCTGCGGGGGTCAGCGTTAAGCCTTGCCAGGCGAAATCTTGTGGGTTAAAGGTTCCTGAATGCATGTCCATCGATTTACCTCACTTCATCGCTTTCAGCGTATAACAGCATATTAGTGATAATGATTAta                                                                                                                          >  1:676889/1‑142 (MQ=255)
                  gtgtATCGCCGCTGCGGGTGTCAGCGTTATGCCTTGCCAGGCGAAATCTTGTGGGTTAAAGGTTCCTGAATGCATGTCCATCGATTTACCTCACTTCATCGCTTTCAGCGTATAACAGCATATTAGTGATAATGATTATCAGt                                                                                                                       <  2:1090160/143‑1 (MQ=255)
                   tgtATCGCCGCTGCGGGTGTCAGCGTTAAGCCTTGCCAGGCGAAATCTTGTGGGTTAAAGGTTCCTGAATGCATGTCCATCGATTTACCTCACTTCATCGCTTTCAGCGTATAACCGCATATTAGTGATAATGACTATCAgat                                                                                                                      >  2:115684/1‑141 (MQ=255)
                   tgtATCGCCGCTGCGGGTGTCAGCGTTAAGCCTTGCCAGGCGAAATCTTGTGGGTTAAAGGTTCCTGAATGCATGTCCATCGATTTACCTCACTTCATCGCTTTCAGCGTATAACAGCATATTAGTGATAATGATTATCAGtt                                                                                                                      <  1:982072/143‑1 (MQ=255)
                       tCGCCGCTGCGGGTGTCAGCGTTAAGCCTTGCCAGGCGAAATCTTGTGGGTTAAAGGTTCCTGAATGCATGTCCATCGATTTACCTCACTTCATCGCTTTCAGCGTATAACAGCATATTAGTGATAATGATTATCAGTTCAAc                                                                                                                  >  2:584679/1‑143 (MQ=255)
                                    tgtCAGCGTTAAGCCTTGCCAGGCGAAATCTTGTGGGTTAAAGGTTCCTGAATGCATGTCCATCGATTTACCTCACTTCATCGCTTTCAGCGTATAACAGCATATTAGTGATAATGATTATCAGTTCAACCCAGCAAACGCAg                                                                                                     >  1:877889/1‑143 (MQ=255)
                                    tgtCAGCGTTAAGCCTTGCCAGGCGAAATCTTGTGGGTTAAAGGTTCCTGAATGCATGTCCATCGATTTACCTCACTTCATCGCTTTCAGCGTATAACAGCATATTAGTGATAATGATTATCAGTTCAACCCAGCAAACGCAg                                                                                                     >  1:703044/1‑143 (MQ=255)
                                    tgtCAGCGTTAAGCCTTGCCAGGCGAAATCTTGTGGGTTAAAGGTTCCTGAATGCATGTCCATCGATTTACCTCACTTCATCGCTTTCAGCGTATAACAGCATATTAGTGATAATGATTATCAGTTCAACCCAGCAAACGCAg                                                                                                     <  1:107746/143‑1 (MQ=255)
                                      tCAGCGTTAAGCCTTGCCAGGCGAAATCTTGTGGGTTAAAGGTTCCTGAATGCATGTCCATCGATTTACCTCACTTCATCGCTTTCAGCGTATAACAGCATATTAGCGATAATGATTATCAGTTCAACCCAGCAAACGCAggg                                                                                                   >  1:916318/1‑143 (MQ=255)
                                       cAGCGTTAAGCCTTGCCAGGCGAAATCTTGTGGGTTAAAGGTTCCTGAATGCATGTCCATCGATTTACCTCACTTCATCGCTTTCAGCGTATAACAGCATATTAGTGATAATGATTATCAGTTCAACCCAGCAAACGCAgggg                                                                                                  <  2:138436/143‑1 (MQ=255)
                                        aGCGTTAAGCCTTGCCAGGCGAAATCTTGTGGGTTAAAGGTTCCTGAATGCATGTCCATCGCTTTACCTCACTTCATCGCTCTCAGCGTATAACAGCATATTAGTGATAATGATTATCAGTTCAACCCAGCCGACGCGGGGGc                                                                                                 >  1:479695/1‑143 (MQ=255)
                                        aGCGTTAAGCCTTGCCAGGCGAAATCTTGTGGGTTAAAGGTTCCTGAATGCATGTCCATCGATTTACCTCACTTCATCGCTTTCAGCGTATAACAGCATATTAGTGATAATGATTCTCCGTTGAACCCAGCAAACGCAGGGGc                                                                                                 >  2:174942/1‑143 (MQ=255)
                                          cGTTAAGCCTTG‑CAGGCGAAATCTTGTCGGTGAAAGGTTCCTGAATGCATGTCCATCGATTTACCTCACTTCATCGCTTTCAGCGTATAACAGCATATTAGTGATAATGATTATCAGTTCAACCCAGCAAACGCAGGGGCttt                                                                                              <  2:245033/143‑1 (MQ=255)
                                              aaGCCCTGCCAGGCGAAATCTTGTGGGTTAAAGGTTCCTGAATGCATGTCCATCGATTTACCTCACTTCATCGCTTTCAGCGTATAACAGCATATTAGTGATAATGATTATCAGTTCAACCCAGCAAACGCAGGGGCTTTAcc                                                                                           <  1:614187/143‑1 (MQ=255)
                                                   ttGCCAGGCGAAATCTTGTGGGTTAAAGGTTCCTGAATGCATGTCCATCGATTTACCTCACTTCATCGCTTTCAGCGTATAACAGCATATTAGTGCTAATGATTATCAGTTCAACCCAGCAAACGCAGGGGCTTTACCGTaaa                                                                                      >  1:310117/1‑143 (MQ=255)
                                                   ttGCCAGGCGAAATCTTGTGGGTTAAAGGTTCCTGAATGCATGTCCATCGATTTACCTCACTTCATCGCTTTCAGCGTATAACAGCATATTAGTGATAATGATTATCAGTTCAACCCAGCAAACGCAGGGGCTTTACCGTcaa                                                                                      >  1:25200/1‑143 (MQ=255)
                                                       cAGGCGAACGCTGGTGGGTTAAAGGTTCCTGAATGCATGTCCATCGCTTTACCTCACTTCATCGCTTTCAGCGTATAACAGCATATTAGTGATAATGATTATCAGTTCAACCCAGCAAACGCAGGGGCTTTACCGTAAAACAt                                                                                  <  1:862051/143‑1 (MQ=255)
                                                           cGACATCTTGTAGATTAGAGGTTCCTGAATGCATGTCCATCGATTTACCTCACTTCATCGCTTTCAGCGTATAACAGCATATTAGTGATAATGATTATCAGTTCAACCCAGCAAACGCAGGGGCTTTACCGTAAAACATGCtt                                                                              <  1:147219/143‑1 (MQ=255)
                                                           cGAAATCTTGTGGGTTAAAGGTTCCTGAATGCATGTCCATCGATTTACCTCACTTCATCGCTTTCAGCGTATAACAGCATATTAGTGATAATGATTATCAGTTCAACCCAGCAAACGCAGGGGCTTTACCGTAAAACATGCtt                                                                              >  1:908370/1‑143 (MQ=255)
                                                                  ttGTGGGTTAAAGGTTCCTGAATGCATGTCCATCGATTTACCTCACTTCATCGCTTTCAGCGTATAACAGCATATTAGTGATAATGATTATCAGTTCAACCCAGCAAACGCAGGGGCTTTACCGTAACACATGCTTTTTGCCt                                                                       >  1:866169/1‑143 (MQ=255)
                                                                  ttGTGGGTTAAAGGTTCCTGAATGCATGTCCATCGATTTACCTCACTTCATCGCTTTCAGCGTATAACAGCATATTAGTGATAATGATTATCAGTTCAACCCAGCAAACGCAGGGGCTTTACCGTAAAACATGCTTTTTGCCt                                                                       <  1:595251/143‑1 (MQ=255)
                                                                      gggTTAAAGGTTCCTGAATGCATGTCCATCGATTTACCTCACTTCATTGCGTTCAGCGTATAACAGCATATTAGTGATAATGATTATCAGTTCAACCCAGCAAACGCAGGGGCTTTACCGTAAAACATGCTTTTTGCCTGCtt                                                                   <  2:829797/143‑1 (MQ=255)
                                                                      gggTTAAAGGTTCCTGAATGCATGTCCATCGATTTACCTCACTTCATCGCTTTCAGCGTATAACAGCATATTAGTGATAATGATTATCAGTTCAACCCAGCAAACGCAGGTGCTTTACCGTAAAACATGCTTTTTGCCTGCtt                                                                   >  1:879208/1‑143 (MQ=255)
                                                                       ggTTAAAGGTCCCTGAATGCATGTCCATCGATTTACCTCACTTCATCGCTTTCAGCGTATAACAGCATATTAGTGATAATGATTATCAGTTCAACCCAGCAAACGCAGGGGCTTTACCGTAAAACATGCTTTTTGCCTGCttt                                                                  <  1:311184/143‑1 (MQ=255)
                                                                         ttAAAGGTTCCTGAATGCATGTCCATCGATTTACCTCACTTCATCGCTTTCAGCGTATAACAGCATATTAGTGATAATGATTATCAGTTCAACCCAGCAAACGCAGGGGCTTTACCGTAAAACATGCTTTTTGCCTGCTTTta                                                                >  1:838519/1‑143 (MQ=255)
                                                                           aaaGGTTCCTGAATGCATGTCCATCGATTTACCTCACTTCATCGCTTTCAGCGTATAACAGCATATTAGTGATAATGATTATCAGTTCAACCCAGCAAACGCAGGGGCTTTACCGTAAAACATGCTTTTTGCCTGCTTTtaat                                                              <  1:337663/143‑1 (MQ=255)
                                                                              ggTTCCTGAATGCATGTCCATCGATTTACCTCACTTCATCGCTTTCAGCGTATAACAGCATATTAGTGATAATGATTATCAGTTCAACCCAGCAAACGCAGGGGCTTTACCGTAAAACATGCTTTTTGCCTGCTTTTAATAAg                                                           <  1:927733/143‑1 (MQ=255)
                                                                              gccgccTGGATGCATGTCCATCGATTTCCCTCACTTCAGCGCTTTCAGCGTATAACAGCATATTAGTGATAATGATTAGCAGTTCAACCCAGCAACCGCAGGGGCTTTACCGTAAAACATGCTTTTTGCCTGCTTTTAATAAg                                                           <  2:161937/139‑1 (MQ=255)
                                                                                 tCCTGAATGCATGTCCATCGATTTACCTCACTTCATCGCTTTCAGCGTATAACAGCATATTAGTGATAATGATTATCAGTTCAACCCAGCAAACGCAGGGGCTTTACCGTAAAACATGCTTTTTGCCTGCTTTTAATAAGCAt                                                        <  2:747857/143‑1 (MQ=255)
                                                                                     gAATGCATGTCCATCGATTTACCTCACTTCATCGCTTTCAGCGTATAACAGCATATTAGTGATAATGATTATCAGTTCAACCCAGCAAACGCAGGGGCTTTACCGTAAAACATGCTTTTTGCCTGCTTTTAATAAGCATAGAc                                                    >  1:574849/1‑143 (MQ=255)
                                                                                        tGCATGTCCATCGATTTACCTCACTTCATCGCTTTCCGCGTATAACAGCATATTAGTGAGAATGATTATCAGTTCAACCCAGCAAACGCAGGGGCTTTACCGTAAAACATGCTTTTTGCCTGCTTTTAATAAGCATAGACCCt                                                 <  1:413566/143‑1 (MQ=255)
                                                                                        tGCATGTCCATCGATTTACCTCACTTCATCGCTTTCAGCGTATAACAGCATATTAGTGATAATGATTATCAGTTCAACCCAGCAAACGCAGGGGCTTTACCGTAAAACATGCTTTTTGCCTGCTTTTAATAAGCATAGACCCt                                                 <  1:584679/143‑1 (MQ=255)
                                                                                         gCATGTCCATCGATTTACCTCACTTCATCGCTTTCAGCGTATAACAGCATATTAGTGATAATGATTATCAGTTCAACCCAGCAAACGCAGGGGCCTTACTGTTTTACTTGCTTTTTGCCTGCTTTTAATAAGCATAGACCCTg                                                >  2:230458/1‑143 (MQ=255)
                                                                                           aTGTCCATCGATTTACCTCACTTCATCGCTTTCAGCGTATAACAGCATATTAGTGATAATGATTATCAGTTCAACCCAGCAAACGCAGGGGCTTTACCGTAAAACATGCTTTTTGCCTGCTGTTAATAAGCATAGACCCTGAt                                              >  1:958776/1‑143 (MQ=255)
                                                                                             gTCCATCGATTTACCTCACTTCATCGCTTTCAGCGTATAACAGCATATTAGTGATAATGATTATCAGTTCAACCCAGCAAACGCAGGGGCATTACCGTAAAACATGCTTTTCGCCTGCTTTTAATACGCATAGCCCCTGAtgt                                            >  2:438810/1‑143 (MQ=255)
                                                                                              tCCATCGCTTTACCTCACTTCATCGCCTACCGCCAACGGCAGCATATTAGTGCTAATGATTATCAGTTCAACCCAGCAAACGCAGGGGCTTTACCGTAAAACATGCTTTTTGCCTGCTTTTAATAAGCATAGACCCTGAtgtg                                           <  2:1069905/143‑1 (MQ=255)
                                                                                              tCCATCGATTTACCTCACTTCATCGCTTTCAGCGTATAACAGCATATTAGTGATAATGATTATCAGTTCAACCCAGCAAACGCAGGGGCTTTACCGTAAAACATGCTTTTTGCCTGCTTTTAATAAGCATAGACCCTGAtgtg                                           >  1:673558/1‑143 (MQ=255)
                                                                                               ccATCGATTTACCTCACTTCATCGCTTTCAGCGTATAACAGCATATTAGTGATAATGATTATCAGTTCAACCCAGCAAACGCAGGGGCTTTACCGTAAAACATGCTTTTTGCCTGCTTTTAATAAGCATAGACCCTGAtgtgt                                          <  1:965030/143‑1 (MQ=255)
                                                                                               ccATCGATTTACCTCACTTCATCGCTGTCGGCGGATAACAGCATATTAGTGATAATGATTATCAGTTCAACCCAGCAAACGCAGGGGCTTTACCGTAAAACATGCTTTTTGCCTGCTTTTAATAAGCATAGACCCTGAtgtgt                                          <  1:264545/143‑1 (MQ=255)
                                                                                                 aTCGATTTACCTCACTTCATCGCTTTCAGCGTATAACAGCATATTAGTGATAATGATTATCAGTTCAACTCAGCAAACGCGGGGGCTTTACCGTAAAACATGCTTTGTGCCTGCTTTTAATAAGCATAGACCCTGATGTGTgg                                        <  2:141643/143‑1 (MQ=255)
                                                                                                 aTCGATTTACCTCACTTCATCGCTTTCAGCGTATAACAGCATATTAGTGATAATGATTATCAGTTCAACCCAGCAAACGCAGGGGCTTTACCGTAAAACATGCTTTTTGCCTGCTTTTAATAAGCATAGACCCTGCTGTGTgg                                        >  1:976756/1‑143 (MQ=255)
                                                                                                 aTCGATTTACCTCACTTCATCGCTTTCAGCGTATAACAGCATATTAGTGATAATGATTATCAGTTCAACCCAGCAAACGCAGGGGCTTTACCGTAAAACATGCTTTTTGCCTGCTTTTAATAAGCATAGACCCTGATGTGTgg                                        >  1:760344/1‑143 (MQ=255)
                                                                                                  tCGATTTACCTCACTTCATCGCTTTCAGCGTATAACAGCATATTAGTGATAATGATTATCAGTTCAACCCAGCAAACGCAGGGGCTTTACCGTAAAACATGCTTTTTGCCTGCTTTTAATAAGCATAGACCCTGATGTGTggg                                       <  1:491271/143‑1 (MQ=255)
                                                                                                          ccTCACTTCATCGCTTTCAGCGTATAACAGCATATTAGTGATAATGATTATCAGTTCAACCCAGCAAACACAGGGGCTTTACCGTAAAACATGCTTGTTGCCTGCTTGTAACAAGCATAGACACTGCTGTGCGGGTTGACAgg                               >  2:416912/1‑143 (MQ=255)
                                                                                                           cgcACTTGGTCGCTTTCAGCGTATAACAGCATATTAGTGATGATGATTATCAGTTCAACCCAGCGAACGCAGGGGCTTTACCGTAAAACATGCTTGTTGCCTGCTTTTAATAAGCATAGACCCTGATGTGTGGGTTAACAGGc                              <  2:515541/141‑1 (MQ=255)
                                                                                                            tCACTTCATCGCTTTCAGCGTATAACAGCATATTAGTGATAATGATTATCAGTTCAACCCAGCAAACGCTGGGGCTTTACCGTAAAACATGCTTTTAGGCTGCCGTTAATAAGCGTAGCCCCTGATGTGTGGGTTAACAGGcc                             >  2:658218/1‑142 (MQ=255)
                                                                                                            tCACTTCATCGCTTTCAGCGTATAACAGCATATTAGTGATAATGATTATCAGTTCAACCCAGCAAACGCAGGGGCTTTACCGTAAAACATGCTTTTTGCCTGCTTTTAATAAGCATAGACCCTGATGTGTGGGTTAACAGGcg                             >  1:670322/1‑142 (MQ=255)
                                                                                                            tCACTTCATCGCTTTCAGCGTATAACAGCATATTAGTGATAATGATTATCAGTTCAACCCAGCAAACGCAGGGGCTTTACCGTAAAACATGCTTTTTGCCTGCTTTTAATAAGCATAGACCCTGATGTGTGGGTTAACAGGCa                             >  1:37451/1‑143 (MQ=255)
                                                                                                                ttCATCGCTTTCAGCGTATAACAGCATATTAGTGATAATGATTATCAGTTCAACCCAGCAAACGCAGGGGCTTTACCGTAAAACATGCTTTTTGCCTGCTTTTAATAAGCATAGACCCTGATGTGTGGGTTAACAGGCACGCt                         >  1:900022/1‑143 (MQ=255)
                                                                                                                  cATCGCTTTCAGCGTATAACAGCATATTAGTGATAATGATTATCAGTTCAACCCAGCAAACGCAGGGGCTTTACCGTAAAACATGCTTTTTGCCTGCTTTTAATAAGCATAGACCCTGATGTGTGGGTTAACAGGCACGCTaa                       >  1:23638/1‑143 (MQ=255)
                                                                                                                  cATCGCGTTCAGCGTAGAACAGCATCTTAGTGATAATGATTATCAGTTCAACCCAGCAAACGCAGGGGCTTTACCGTAAAACATGCTTTTTGCCTGCTTTTAATAAGCATAGACCCTGATGTGTGGGTTAACAGGCACGCTaa                       <  2:1002221/143‑1 (MQ=255)
                                                                                                                   aTCGCTTTCAGCGTATAACAGCATATTAGTGATAATGATTATCAGTTCAACCCAGCAAACGCAGGGGCTTTACCGTAAAACATGCTTTTTGCCTGCTTTTAATAAGCATAGACCCTGATGTGTGGGTTAACAGGCACGCTAAg                      <  1:1009582/143‑1 (MQ=255)
                                                                                                                        tttCAGCGTATAACAGCATAGTAGTGATAATGATTAGCAGATCAACCCAGCAAACGCAGGGGCTTTACCGTAAAACATGCTTTTTGCCTGCTTTTAATAAGCATAGACCCTGATGTGTGGGTTAACAGGCACGCTAAGAATTa                 <  1:18854/143‑1 (MQ=255)
                                                                                                                        tgtCAGCGTAGAACAGCATATTAGTGATAATGATTATCAGTTCAACCCAGCAAACGCAGGGGCTTTACCGTAAAACATGCTTTTTGCCTGCTTTTAATAAGCATAGACCCTGATGTGTGGGTTAACAGGCACGCTAAGAATTa                 <  2:503514/141‑1 (MQ=255)
                                                                                                                              cGTATAACAGCATATTAGTGATAATGATTATCAGTTCAACCCAGCAAACGCAGGGGCTTTACCGTAAAACATGCTTTTTGCCTGCTTTTAATAAGCATAGACCCTGATGTGTGGGTTAACAGGCACGCTAAGAATTAGGTAtc           >  1:563544/1‑143 (MQ=255)
                                                                                                                                tataACAGCATATTAGTGATAATGATTATCAGTTCAACCCAGCAAACGCAGGGGCTTTACCGTAAAACATGCTTTTTGCCTGCTTTTAATAAGCATAGACCCTGATGTGTGCGTTAACAGGCCCGCTACGACTTAGGTAcctc         >  1:1004149/1‑143 (MQ=255)
                                                                                                                                   aaCAGCATATTAGTGATAATGATTATCAGTTCAACCCAGCAAACGCAGGGGCTTTACCGTAAAACATGCTTTTTGCCTGCTTTTAATAAGCATAGACCCTGATGTGTGGGTTAACAGGCACGCTAAGAATTAGGTATCTCAtt      <  1:680570/143‑1 (MQ=255)
                                                                                                                                    aCAGCATATTAGTGATAATGATTATCAGTTCAACCCAGCAAACGCAGGGGCTTTACCGTAAAACATGCTTTTTGCCTGCTTTTAATAAGCATAGACCCTGATGTGTGGGTTAACAGGCACGCTAAGAATTAGGTATCTCATTg     >  2:157704/1‑143 (MQ=255)
                                                                                                                                      aGCATATTAGTGATAATGATTATCAGTTCAACCCAGCAAACGCAGTGGCTTTACCGTAAAACATGCTTTTTGCCTGCTTTTAATAAGCATAGACCCTGACGTGTGGGTTAACAGGCACGCTAGGAATTAGGTAGCTCATTGtt   >  2:998418/1‑143 (MQ=255)
                                                                                                                                       gCATATTAGTGATAATGATTATCAGTTCAACCCAGCAAACGCAGGGGCTTTACCGTAAAACATGCTTTTTGCCTGCTTTTAATAAGCATAGACCCTGATGTGTGGGTTAACAGGCACGCTAAGAATTAGGTATCTCATTGTTa  <  1:99893/143‑1 (MQ=255)
                                                                                                                                       gCATATTAGTGATAATGATTATCAGTTCAACCCAGCAAACGCAGGGGCTTTACCGTAAAACATGCTTTTTGCCTGCTTTTAATAAGCATAGACCCTGATGTGTGGGTTAACAGGCACGCTAAGAATTAGGTATCTCATTGTTa  <  1:569709/143‑1 (MQ=255)
                                                                                                                                           |                                                                                                                                          
TGCCACCAGCTCACGGATGTGTATCGCCGCTGCGGGTGTCAGCGTTAAGCCTTGCCAGGCGAAATCTTGTGGGTTAAAGGTTCCTGAATGCATGTCCATCGATTTACCTCACTTCATCGCTTTCAGCGTATAACAGCATGTTAGTGATAATGATTATCAGTTCAACCCAGCAAACGCAGGGGCTTTACCGTAAAACATGCTTTTTGCCTGCTTTTAATAAGCATAGACCCTGATGTGTGGGTTAACAGGCACGCTAAGAATTAGGTATCTCATTGTTA  >  NC_000913/1764288‑1764565

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑

GATK/CNVnator alignment

N/A