mutation predictions | marginal predictions | summary statistics | genome diff | command line log
|
breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | ||||||
|---|---|---|---|---|---|---|
| evidence | position | mutation | freq | annotation | gene | description |
| RA | 8,741 | G→A | 6.5% | A168A (GCG→GCA) | talB → | transaldolase B |
| RA | 16,923 | T→G | 7.2% | K13T (AAG→ACG) | mokC ← | regulatory protein MokC |
| RA | 93,579 | C→A | 7.8% | S138R (AGC→AGA) | murE → | UDP‑N‑acetylmuramoyl‑L‑alanyl‑D‑glutamate‑‑2, 6‑diaminopimelate ligase |
| RA | 93,598 | G→A | 7.3% | G145S (GGT→AGT) | murE → | UDP‑N‑acetylmuramoyl‑L‑alanyl‑D‑glutamate‑‑2, 6‑diaminopimelate ligase |
| RA | 111,013 | G→A | 6.5% | intergenic (+29/‑31) | secA → / → mutT | protein translocation ATPase/8‑oxo‑dGTP diphosphatase |
| RA | 111,016 | T→C | 6.7% | intergenic (+32/‑28) | secA → / → mutT | protein translocation ATPase/8‑oxo‑dGTP diphosphatase |
| RA | 114,507 | A→T | 9.9% | intergenic (+20/+15) | guaC → / ← hofC | GMP reductase/inner membrane protein HofC |
| RA | 114,511 | A→C | 8.4% | intergenic (+24/+11) | guaC → / ← hofC | GMP reductase/inner membrane protein HofC |
| RA | 125,387 | C→T | 100% | Q791* (CAG→TAG) | aceE → | pyruvate dehydrogenase E1 component |
| MC JC | 257,908 | Δ776 bp | 100% | insB9–[crl] | insB9, insA9, [crl] | |
| RA | 285,882 | T→G | 10.4% | I163S (ATC→AGC) | yagG → | putative D‑xylonate transporter YagG |
| RA | 285,887 | C→A | 10.5% | L165M (CTG→ATG) | yagG → | putative D‑xylonate transporter YagG |
| RA | 419,670 | Δ1 bp | 81.1% | coding (80/1320 nt) | brnQ → | branched chain amino acid transporter BrnQ |
| JC | 420,159 | Δ12 bp | 21.6% | coding (569‑580/1320 nt) | brnQ → | branched chain amino acid transporter BrnQ |
| JC | 440,715 | Δ8 bp | 20.7% | coding (380‑387/900 nt) | ispA ← | geranyl diphosphate/farnesyl diphosphate synthase |
| RA | 475,972 | C→G | 7.0% | intergenic (+21/+10) | ybaY → / ← atl | PF09619 family lipoprotein YbaY/DNA base‑flipping protein |
| RA | 546,991 | G→C | 10.0% | Q104H (CAG→CAC) | fdrA → | putative acyl‑CoA synthetase FdrA |
| RA | 681,694 | A→G | 9.0% | intergenic (+31/+29) | djlC → / ← hscC | co‑chaperone DjlC/chaperone protein HscC |
| RA | 696,470 | C→T | 100% | noncoding (35/75 nt) | glnX ← | tRNA‑Gln |
| RA | 699,559 | A→G | 8.2% | intergenic (‑382/+15) | asnB ← / ← umpH | asparagine synthetase B/UMP phosphatase |
| RA | 759,250 | G→T | 100% | R182L (CGC→CTC) | sucA → | subunit of E1(0) component of 2‑oxoglutarate dehydrogenase |
| RA | 784,012 | T→A | 8.5% | Q271L (CAG→CTG) | zitB ← | Zn(2(+))/Cd(2(+))/Ni(2(+))/Cu(2(+)) exporter |
| RA | 786,458 | Δ1 bp | 100% | coding (826/1053 nt) | aroG → | 3‑deoxy‑7‑phosphoheptulonate synthase, Phe‑sensitive |
| RA | 790,931 | C→G | 6.1% | W33C (TGG→TGC) | galT ← | galactose‑1‑phosphate uridylyltransferase |
| RA | 847,213 | A→T | 7.4% | intergenic (‑94/+45) | glnP ← / ← glnH | L‑glutamine ABC transporter membrane subunit/L‑glutamine ABC transporter periplasmic binding protein |
| RA | 857,580 | G→A | 5.4% | intergenic (+25/+216) | ybiT → / ← ybiU | ABC transporter ATP‑binding protein YbiT/DUF1479 domain‑containing protein YbiU |
| RA | 916,968 | C→T | 10.6% | R166C (CGC→TGC) | ybjD → | DUF2813 domain‑containing protein YbjD |
| RA | 987,420 | A→C | 6.1% | intergenic (‑438/+165) | ompF ← / ← asnS | outer membrane porin F/asparagine‑‑tRNA ligase |
| RA | 1,113,544 | G→A | 5.5% | intergenic (+138/‑35) | opgH → / → yceK | osmoregulated periplasmic glucans (OPGs) biosynthesis protein H/DUF1375 domain‑containing lipoprotein YceK |
| RA | 1,113,546 | T→A | 5.5% | intergenic (+140/‑33) | opgH → / → yceK | osmoregulated periplasmic glucans (OPGs) biosynthesis protein H/DUF1375 domain‑containing lipoprotein YceK |
| RA | 1,113,548 | T→C | 5.5% | intergenic (+142/‑31) | opgH → / → yceK | osmoregulated periplasmic glucans (OPGs) biosynthesis protein H/DUF1375 domain‑containing lipoprotein YceK |
| RA | 1,224,242 | A→T | 6.2% | intergenic (+335/+37) | ycgI → / ← minE | protein YcgI/Z‑ring positioning protein MinE |
| RA | 1,233,154 | T→A | 5.8% | intergenic (‑124/+22) | dsbB ← / ← nhaB | protein thiol:quinone oxidoreductase DsbB/Na(+):H(+) antiporter NhaB |
| RA | 1,233,157 | T→A | 5.9% | intergenic (‑127/+19) | dsbB ← / ← nhaB | protein thiol:quinone oxidoreductase DsbB/Na(+):H(+) antiporter NhaB |
| RA | 1,260,904 | A→G | 7.9% | intergenic (‑101/+24) | dauA ← / ← prs | aerobic C4‑dicarboxylate transporter DauA/ribose‑phosphate diphosphokinase |
| RA | 1,273,229 | A→T | 10.5% | intergenic (+27/+17) | chaC → / ← ychN | glutathione‑specific gamma‑glutamylcyclotransferase/DsrE/F sulfur relay family protein YchN |
| RA | 1,330,396:1 | +T | 6.7% | intergenic (+15/+21) | sohB → / ← yciN | S49 peptidase family protein/protein YciN |
| RA | 1,330,399 | A→T | 6.7% | intergenic (+18/+18) | sohB → / ← yciN | S49 peptidase family protein/protein YciN |
| RA | 1,330,402 | Δ1 bp | 6.5% | intergenic (+21/+15) | sohB → / ← yciN | S49 peptidase family protein/protein YciN |
| RA | 1,344,033 | A→G | 10.0% | L105P (CTG→CCG) | yciT ← | putative DNA‑binding transcriptional regulator YciT |
| RA | 1,367,353 | A→G | 7.7% | M187T (ATG→ACG) | pspF ← | DNA‑binding transcriptional dual regulator PspF |
| RA | 1,413,964 | C→T | 7.2% | intergenic (‑37/+20) | ralR ← / ← recT | Rac prophage; endodeoxyribonuclease toxin RalR/Rac prophage; recombinase, DNA renaturation |
| RA | 1,413,966 | T→A | 5.6% | intergenic (‑39/+18) | ralR ← / ← recT | Rac prophage; endodeoxyribonuclease toxin RalR/Rac prophage; recombinase, DNA renaturation |
| RA | 1,413,968 | A→G | 6.0% | intergenic (‑41/+16) | ralR ← / ← recT | Rac prophage; endodeoxyribonuclease toxin RalR/Rac prophage; recombinase, DNA renaturation |
| RA | 1,498,892 | A→T | 7.8% | intergenic (+17/‑46) | ydcH → / → rimL | protein YdcH/ribosomal‑protein‑L12‑serine acetyltransferase |
| RA | 1,498,894 | C→G | 7.7% | intergenic (+19/‑44) | ydcH → / → rimL | protein YdcH/ribosomal‑protein‑L12‑serine acetyltransferase |
| RA | 1,498,896 | A→T | 8.5% | intergenic (+21/‑42) | ydcH → / → rimL | protein YdcH/ribosomal‑protein‑L12‑serine acetyltransferase |
| RA | 1,500,114 | G→A | 20.4% | S112S (AGC→AGT) | ydcK ← | putative enzyme YdcK |
| RA | 1,534,904 | T→G | 5.1% | intergenic (+35/+61) | nhoA → / ← yddE | arylamine N‑acetyltransferase/PF02567 family protein YddE |
| RA | 1,647,873 | C→T | 7.1% | intergenic (‑23/‑61) | dicC ← / → dicA | Qin prophage; DNA‑binding transcriptional regulator for DicB/DNA‑binding transcriptional dual regulator DicA |
| RA | 1,647,876 | A→G | 7.1% | intergenic (‑26/‑58) | dicC ← / → dicA | Qin prophage; DNA‑binding transcriptional regulator for DicB/DNA‑binding transcriptional dual regulator DicA |
| RA | 1,689,817 | C→A | 8.4% | intergenic (+66/‑35) | manA → / → ydgA | mannose‑6‑phosphate isomerase/conserved protein YdgA |
| RA | 1,689,819 | A→T | 8.0% | intergenic (+68/‑33) | manA → / → ydgA | mannose‑6‑phosphate isomerase/conserved protein YdgA |
| RA | 1,689,821 | T→G | 9.8% | intergenic (+70/‑31) | manA → / → ydgA | mannose‑6‑phosphate isomerase/conserved protein YdgA |
| RA | 1,764,427 | G→A | 100% | intergenic (‑41/+286) | sufA ← / ← rydB | iron‑sulfur cluster insertion protein SufA/small regulatory RNA RydB |
| RA | 1,770,203 | T→A | 5.7% | intergenic (+17/‑169) | ydiK → / → rprA | putative transporter YdiK/small regulatory RNA RprA |
| RA | 1,770,204 | C→G | 5.5% | intergenic (+18/‑168) | ydiK → / → rprA | putative transporter YdiK/small regulatory RNA RprA |
| RA | 1,770,205 | T→A | 5.5% | intergenic (+19/‑167) | ydiK → / → rprA | putative transporter YdiK/small regulatory RNA RprA |
| RA | 1,778,375 | A→G | 9.0% | intergenic (+28/+15) | ydiO → / ← ydiP | putative acyl‑CoA dehydrogenase/putative DNA‑binding transcriptional regulator YdiP |
| RA | 1,799,370 | Δ1 bp | 7.8% | intergenic (‑100/+23) | pheM ← / ← rplT | pheST‑ihfA operon leader peptide/50S ribosomal subunit protein L20 |
| RA | 1,799,374:1 | +T | 7.7% | intergenic (‑104/+19) | pheM ← / ← rplT | pheST‑ihfA operon leader peptide/50S ribosomal subunit protein L20 |
| RA | 1,856,333 | T→G | 14.6% | E199A (GAG→GCG) ‡ | ydjH ← | putative sugar kinase YdjH |
| RA | 1,856,334 | C→A | 14.7% | E199* (GAG→TAG) ‡ | ydjH ← | putative sugar kinase YdjH |
| RA | 1,868,859 | Δ1 bp | 6.6% | intergenic (+17/‑96) | yeaG → / → yeaH | protein kinase YeaG/DUF444 domain‑containing protein YeaH |
| RA | 1,868,865:1 | +G | 6.5% | intergenic (+23/‑90) | yeaG → / → yeaH | protein kinase YeaG/DUF444 domain‑containing protein YeaH |
| RA | 1,883,027 | C→G | 5.5% | intergenic (+30/‑161) | dmlA → / → yeaV | D‑malate/3‑isopropylmalate dehydrogenase (decarboxylating)/putative transporter YeaV |
| RA | 1,934,854 | C→A | 34.2% | W487C (TGG→TGT) | zwf ← | NADP(+)‑dependent glucose‑6‑phosphate dehydrogenase |
| MC JC | 1,978,503 | Δ776 bp | 100% | insB‑5–insA‑5 | insB‑5, insA‑5 | |
| JC JC | 1,979,486 | IS5 (+) +4 bp | 100% | intergenic (‑271/‑264) | insA‑5 ← / → uspC | IS1 protein InsA/universal stress protein C |
| RA | 2,004,228 | G→T | 8.1% | T119T (ACG→ACT) | fliD → | flagellar filament capping protein |
| RA | 2,081,688 | A→T | 12.6% | I287N (ATT→AAT) | dacD ← | D‑alanyl‑D‑alanine carboxypeptidase DacD |
| RA | 2,089,854 | A→T | 6.9% | intergenic (‑141/‑142) | yefM ← / → hisL | YefM antitoxin of the YoeB‑YefM toxin‑antitoxin pair and DNA binding transcriptional repressor/his operon leader peptide |
| RA | 2,090,122 | A→G | 6.8% | intergenic (+76/‑70) | hisL → / → hisG | his operon leader peptide/ATP phosphoribosyltransferase |
| RA | 2,090,124 | C→G | 7.2% | intergenic (+78/‑68) | hisL → / → hisG | his operon leader peptide/ATP phosphoribosyltransferase |
| RA | 2,090,126 | C→T | 6.7% | intergenic (+80/‑66) | hisL → / → hisG | his operon leader peptide/ATP phosphoribosyltransferase |
| RA | 2,132,787 | A→C | 100% | I204S (ATC→AGC) | wcaA ← | putative colanic acid biosynthesis glycosyl transferase |
| RA | 2,173,361 | Δ2 bp | 100% | pseudogene (917‑918/1358 nt) | gatC ← | galactitol‑specific PTS enzyme IIC component |
| RA | 2,200,841 | Δ1 bp | 12.9% | coding (563/3633 nt) | yehI → | DUF4132 domain‑containing protein YehI |
| MC JC | 2,399,711 | Δ123 bp | 100% | coding (333‑455/2727 nt) | nuoG ← | NADH:quinone oxidoreductase subunit G |
| RA | 2,407,898 | A→C | 11.9% | Q113P (CAG→CCG) ‡ | alaA → | glutamate‑‑pyruvate aminotransferase AlaA |
| RA | 2,407,899 | G→T | 15.2% | Q113H (CAG→CAT) ‡ | alaA → | glutamate‑‑pyruvate aminotransferase AlaA |
| RA | 2,560,317 | A→C | 5.2% | N21H (AAT→CAT) | yffL → | CPZ‑55 prophage; uncharacterized protein YffL |
| RA | 2,560,321 | C→T | 5.8% | A22V (GCT→GTT) | yffL → | CPZ‑55 prophage; uncharacterized protein YffL |
| RA | 2,560,326 | A→G | 5.8% | T24A (ACA→GCA) | yffL → | CPZ‑55 prophage; uncharacterized protein YffL |
| RA | 2,661,969 | C→G | 100% | V55L (GTT→CTT) | iscR ← | DNA‑binding transcriptional dual regulator IscR |
| RA | 2,707,321 | A→T | 6.3% | intergenic (‑197/+1) | lepA ← / ← rseC | elongation factor 4/protein RseC |
| RA | 2,716,033 | C→A | 9.0% | intergenic (+23/+33) | eamB → / ← grcA | cysteine/O‑acetylserine exporter EamB/stress‑induced alternate pyruvate formate‑lyase subunit |
| RA | 2,731,073 | A→T | 13.0% | noncoding (85/1542 nt) | rrsG ← | 16S ribosomal RNA |
| RA | 2,731,074 | A→T | 11.7% | noncoding (84/1542 nt) | rrsG ← | 16S ribosomal RNA |
| RA | 2,902,100 | G→A | 7.2% | A69T (GCC→ACC) | ygcE → | putative sugar kinase YgcE |
| RA | 3,041,632 | T→A | 100% | V107E (GTG→GAG) | ygfZ → | folate‑binding protein |
| RA | 3,061,818 | G→C | 5.7% | W323C (TGG→TGC) | scpA → | methylmalonyl‑CoA mutase |
| RA | 3,067,320 | A→T | 7.7% | intergenic (‑147/+20) | ygfI ← / ← yggE | putative LysR‑type DNA‑binding transcriptional regulator YgfI/uncharacterized protein YggE |
| RA | 3,067,323 | A→T | 7.6% | intergenic (‑150/+17) | ygfI ← / ← yggE | putative LysR‑type DNA‑binding transcriptional regulator YgfI/uncharacterized protein YggE |
| RA | 3,101,541 | G→C | 11.4% | P28R (CCG→CGG) | yggN ← | putative EcfF |
| RA | 3,184,219 | A→G | 7.5% | M83T (ATG→ACG) | ribB ← | 3,4‑dihydroxy‑2‑butanone‑4‑phosphate synthase |
| RA | 3,309,009 | C→T | 8.9% | intergenic (‑85/+24) | nlpI ← / ← pnp | lipoprotein NlpI/polynucleotide phosphorylase |
| RA | 3,309,012 | A→G | 8.5% | intergenic (‑88/+21) | nlpI ← / ← pnp | lipoprotein NlpI/polynucleotide phosphorylase |
| RA | 3,352,184 | C→G | 41.0% | R281P (CGC→CCC) | arcB ← | sensory histidine kinase ArcB |
| RA | 3,473,614 | C→T | 100% | W156* (TGG→TGA) | rpsG ← | 30S ribosomal subunit protein S7 |
| RA | 3,519,036 | A→T | 7.5% | V10D (GTT→GAT) | aroK ← | shikimate kinase 1 |
| RA | 3,560,455:1 | +G | 100% | pseudogene (151/758 nt) | glpR ← | DNA‑binding transcriptional repressor GlpR |
| RA | 3,637,645:1 | +T | 100% | coding (4/1500 nt) | pitA → | metal phosphate:H(+) symporter PitA |
| MC JC | 3,815,859 | Δ82 bp | 100% | [rph] | [rph] | |
| RA | 3,877,558 | G→C | 8.1% | intergenic (‑93/+147) | yidB ← / ← gyrB | conserved protein YidB/DNA gyrase subunit B |
| JC | 4,001,645 | Δ5 bp | 100% | coding (220‑224/951 nt) | corA → | Ni(2(+))/Co(2(+))/Mg(2(+)) transporter |
| RA | 4,009,005 | A→C | 8.1% | S19A (TCG→GCG) | rhtB ← | L‑homoserine/L‑homoserine lactone/L‑threonine exporter |
| RA | 4,041,216 | T→C | 5.8% | Q73R (CAG→CGG) ‡ | mobB ← | molybdopterin‑guanine dinucleotide biosynthesis adaptor protein |
| RA | 4,041,217 | G→A | 5.8% | Q73* (CAG→TAG) ‡ | mobB ← | molybdopterin‑guanine dinucleotide biosynthesis adaptor protein |
| RA | 4,041,220 | T→C | 6.8% | S72G (AGC→GGC) | mobB ← | molybdopterin‑guanine dinucleotide biosynthesis adaptor protein |
| RA | 4,041,221 | G→A | 7.0% | A71A (GCC→GCT) | mobB ← | molybdopterin‑guanine dinucleotide biosynthesis adaptor protein |
| RA | 4,184,543 | C→A | 100% | P1100Q (CCG→CAG) | rpoB → | RNA polymerase subunit beta |
| RA | 4,196,204 | G→A | 74.5% | intergenic (‑105/+128) | thiC ← / ← rsd | phosphomethylpyrimidine synthase/regulator of sigma D |
| RA | 4,241,515 | G→A | 6.3% | T247M (ACG→ATG) | xylE ← | D‑xylose:H(+) symporter |
| RA | 4,296,060 | C→T | 35.7% | intergenic (+266/+376) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| RA | 4,296,380:1 | +CG | 100% | intergenic (+586/+56) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| RA | 4,366,854 | T→G | 6.7% | intergenic (‑81/+37) | dcuA ← / ← aspA | C4‑dicarboxylate transporter DcuA/aspartate ammonia‑lyase |
| RA | 4,366,855 | C→A | 6.9% | intergenic (‑82/+36) | dcuA ← / ← aspA | C4‑dicarboxylate transporter DcuA/aspartate ammonia‑lyase |
| RA | 4,376,622 | A→G | 5.6% | T24A (ACC→GCC) | ecnB → | bacteriolytic entericidin B lipoprotein |
| RA | 4,377,791 | A→T | 6.4% | intergenic (‑69/+20) | blc ← / ← ampC | outer membrane lipoprotein Blc/beta‑lactamase |
| RA | 4,472,434 | G→A | 11.6% | R34* (CGA→TGA) | pyrL ← | pyrBI operon leader peptide |
| RA | 4,472,437 | T→C | 12.9% | N33D (AAT→GAT) | pyrL ← | pyrBI operon leader peptide |
| RA | 4,497,953 | A→T | 6.4% | intergenic (+13/‑319) | intB → / → insC‑6 | KpLE2 phage‑like element; putative integrase/KpLE2 phage‑like element; IS2 insertion element repressor InsA |
| RA | 4,497,954 | A→T | 6.4% | intergenic (+14/‑318) | intB → / → insC‑6 | KpLE2 phage‑like element; putative integrase/KpLE2 phage‑like element; IS2 insertion element repressor InsA |
| RA | 4,520,500 | Δ1 bp | 13.1% | intergenic (‑176/+171) | yjhU ← / ← yjhF | KpLE2 phage‑like element; putative DNA‑binding transcriptional regulator YjhU/KpLE2 phage‑like element; putative transporter YjhF |
| RA | 4,520,504:1 | +T | 12.3% | intergenic (‑180/+167) | yjhU ← / ← yjhF | KpLE2 phage‑like element; putative DNA‑binding transcriptional regulator YjhU/KpLE2 phage‑like element; putative transporter YjhF |
| RA | 4,639,556 | A→T | 6.7% | intergenic (+26/+34) | creD → / ← arcA | putative inner membrane protein/DNA‑binding transcriptional dual regulator ArcA |
| RA | 4,640,231 | C→A | 72.0% | E26* (GAA→TAA) | arcA ← | DNA‑binding transcriptional dual regulator ArcA |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 1293040 | 1299340 | 6301 | 56 [0] | [24] 25 | tdk–ychE | tdk,insZ,adhE,ychE |
| * | * | ÷ | NC_000913 | 3423736–3424538 | 3424538 | 1–803 | 26 [24] | [24] 25 | [rrfD]–[rrlD] | [rrfD],[rrlD] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | = 227039 | 36 (0.640) | 3 (0.060) | 3/252 | NT | 8.3% | noncoding (1281/2904 nt) | rrlH | 23S ribosomal RNA |
| ? | NC_000913 | = 227046 | 32 (0.590) | noncoding (1288/2904 nt) | rrlH | 23S ribosomal RNA | |||||
| * | ? | NC_000913 | 257908 = | NA (NA) | 51 (0.900) | 44/264 | NT | 100% | noncoding (768/768 nt) | IS1 | repeat region |
| ? | NC_000913 | = 1293039 | 0 (0.000) | intergenic (‑117/‑488) | hns/tdk | DNA‑binding transcriptional dual regulator H‑NS/thymidine/deoxyuridine kinase | |||||
| * | ? | NC_000913 | 274038 = | NA (NA) | 3 (0.060) | 3/252 | NT | NA | noncoding (1112/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | 274083 = | NA (NA) | noncoding (1067/1195 nt) | IS5 | repeat region | |||||
| * | ? | NC_000913 | = 303629 | 51 (0.900) | 4 (0.080) | 3/238 | NT | 7.5% | intergenic (+24/+224) | yagU/ykgJ | inner membrane protein that contributes to acid resistance/putative zinc‑ or iron‑chelating domain‑containing protein YkgJ |
| ? | NC_000913 | = 303636 | 53 (1.040) | intergenic (+31/+217) | yagU/ykgJ | inner membrane protein that contributes to acid resistance/putative zinc‑ or iron‑chelating domain‑containing protein YkgJ | |||||
| * | ? | NC_000913 | 311347 = | 56 (0.990) | 3 (0.060) | 3/248 | NT | 5.2% | intergenic (‑11/‑765) | ecpR/ykgL | DNA‑binding transcriptional dual regulator MatA/uncharacterized protein YkgL |
| ? | NC_000913 | 311366 = | 56 (1.060) | intergenic (‑30/‑746) | ecpR/ykgL | DNA‑binding transcriptional dual regulator MatA/uncharacterized protein YkgL | |||||
| * | ? | NC_000913 | 315260 = | NA (NA) | 4 (0.070) | 3/252 | NT | NA | noncoding (32/1255 nt) | IS3 | repeat region |
| ? | NC_000913 | 315291 = | NA (NA) | noncoding (63/1255 nt) | IS3 | repeat region | |||||
| * | ? | NC_000913 | = 315646 | NA (NA) | 5 (0.090) | 5/254 | NT | NA | noncoding (418/1255 nt) | IS3 | repeat region |
| ? | NC_000913 | = 315665 | NA (NA) | noncoding (437/1255 nt) | IS3 | repeat region | |||||
| * | ? | NC_000913 | = 316201 | NA (NA) | 6 (0.110) | 6/246 | NT | NA | noncoding (973/1255 nt) | IS3 | repeat region |
| ? | NC_000913 | = 316220 | NA (NA) | noncoding (992/1255 nt) | IS3 | repeat region | |||||
| * | ? | NC_000913 | 339943 = | NA (NA) | 4 (0.070) | 3/250 | NT | NA | coding (151/297 nt) | yahH | putative uncharacterized protein YahH |
| ? | NC_000913 | 339973 = | NA (NA) | coding (181/297 nt) | yahH | putative uncharacterized protein YahH | |||||
| * | ? | NC_000913 | = 341335 | 58 (1.030) | 4 (0.070) | 3/254 | NT | 6.8% | coding (211/1383 nt) | yahJ | putative deaminase with metallo‑dependent hydrolase domain |
| ? | NC_000913 | = 341358 | 54 (1.000) | coding (234/1383 nt) | yahJ | putative deaminase with metallo‑dependent hydrolase domain | |||||
| * | ? | NC_000913 | = 381669 | NA (NA) | 3 (0.060) | 3/250 | NT | NA | noncoding (410/1331 nt) | IS2 | repeat region |
| ? | NC_000913 | = 381695 | NA (NA) | noncoding (436/1331 nt) | IS2 | repeat region | |||||
| * | ? | NC_000913 | 474269 = | NA (NA) | 4 (0.070) | 4/252 | NT | NA | intergenic (+17/+32) | amtB/tesB | ammonia/ammonium transporter/acyl‑CoA thioesterase II |
| ? | NC_000913 | 474296 = | NA (NA) | intergenic (+44/+5) | amtB/tesB | ammonia/ammonium transporter/acyl‑CoA thioesterase II | |||||
| * | ? | NC_000913 | 566777 = | NA (NA) | 2580 (46.110) | 258/262 | NT | 98.0% | noncoding (1/1258 nt) | IS3 | repeat region |
| ? | NC_000913 | = 572471 | 54 (0.960) | coding (6/456 nt) | ybcN | DLP12 prophage; DNA base‑flipping protein | |||||
| * | ? | NC_000913 | = 572471 | 54 (0.960) | 11 (0.260) +34 bp |
8/196 | NT | 28.4% | coding (6/456 nt) | ybcN | DLP12 prophage; DNA base‑flipping protein |
| ? | NC_000913 | = 2170235 | 21 (0.370) | noncoding (65/1258 nt) | IS3 | repeat region | |||||
| * | ? | NC_000913 | = 632332 | 43 (0.760) | 3 (0.050) | 3/258 | NT | 6.7% | coding (151/198 nt) | ybdD | conserved protein YbdD |
| ? | NC_000913 | = 632374 | 42 (0.760) | coding (193/198 nt) | ybdD | conserved protein YbdD | |||||
| * | ? | NC_000913 | = 899695 | NA (NA) | 4 (0.070) | 4/250 | NT | NA | intergenic (+50/+149) | rlmC/artJ | 23S rRNA m(5)U747 methyltransferase/L‑arginine ABC transporter periplasmic binding protein |
| ? | NC_000913 | = 899725 | NA (NA) | noncoding (29/34 nt) | other | REP82a | |||||
| * | ? | NC_000913 | 1104922 = | 53 (0.940) | 3 (0.060) | 3/246 | NT | 5.7% | intergenic (+20/‑39) | csgA/csgC | curlin, major subunit/inhibitor of CsgA amyloid formation |
| ? | NC_000913 | 1104944 = | 50 (0.950) | intergenic (+42/‑17) | csgA/csgC | curlin, major subunit/inhibitor of CsgA amyloid formation | |||||
| * | ? | NC_000913 | 1207790 = | 11 (0.200) | 40 (0.810) | 34/232 | NT | 83.6% | coding (290/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | 1209619 = | 6 (0.120) | pseudogene (37/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
| * | ? | NC_000913 | = 1207805 | 11 (0.200) | 28 (0.570) | 27/232 | NT | 78.2% | coding (305/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | = 1209602 | 6 (0.120) | pseudogene (54/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
| * | ? | NC_000913 | 1299176 = | 0 (0.000) | 13 (0.230) | 13/264 | NT | 100% | coding (579/648 nt) | ychE | putative inner membrane protein |
| ? | NC_000913 | = 1979270 | NA (NA) | noncoding (1/768 nt) | IS1 | repeat region | |||||
| * | ? | NC_000913 | = 1299498 | 2 (0.040) | 13 (0.240) | 11/256 | NT | 93.1% | intergenic (+253/‑33) | ychE/insH21 | putative inner membrane protein/IS5 transposase and trans‑activator |
| ? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+151/‑484) | insH21/oppA | IS5 transposase and trans‑activator/oligopeptide ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | 1307070 = | 5 (0.090) | 17 (0.300) | 15/262 | NT | 77.3% | coding (81/330 nt) | yciU | DUF440 domain‑containing protein YciU |
| ? | NC_000913 | = 1979270 | NA (NA) | noncoding (1/768 nt) | IS1 | repeat region | |||||
| * | ? | NC_000913 | = 1552149 | NA (NA) | 5 (0.090) | 5/250 | NT | NA | noncoding (20/29 nt) | other | REPv120b |
| ? | NC_000913 | = 1552160 | NA (NA) | noncoding (9/29 nt) | other | REPv120b | |||||
| * | ? | NC_000913 | = 1768808 | 61 (1.080) | 4 (0.070) | 4/254 | NT | 6.4% | intergenic (‑123/‑266) | ydiJ/ydiK | putative FAD‑linked oxidoreductase/putative transporter YdiK |
| ? | NC_000913 | = 1768863 | 59 (1.090) | intergenic (‑178/‑211) | ydiJ/ydiK | putative FAD‑linked oxidoreductase/putative transporter YdiK | |||||
| * | ? | NC_000913 | 1812336 = | 60 (1.060) | 3 (0.060) | 3/248 | NT | 5.1% | coding (797/804 nt) | ydjO | protein YdjO |
| ? | NC_000913 | 1812369 = | 55 (1.040) | coding (764/804 nt) | ydjO | protein YdjO | |||||
| * | ? | NC_000913 | 2288919 = | NA (NA) | 12 (0.210) | 12/264 | NT | 23.5% | noncoding (1195/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 4555686 | 39 (0.690) | coding (635/831 nt) | yjiC | uncharacterized protein YjiC | |||||
| * | ? | NC_000913 | 2304842 = | NA (NA) | 4 (0.070) | 3/250 | NT | NA | noncoding (32/36 nt) | other | REP161h |
| ? | NC_000913 | = 2347239 | NA (NA) | noncoding (2/36 nt) | other | REP164b | |||||
| * | ? | NC_000913 | 2700550 = | 56 (0.990) | 4 (0.080) | 3/226 | NT | 8.2% | noncoding (31/77 nt) | ohsC | small regulatory RNA OhsC |
| ? | NC_000913 | 2700601 = | 42 (0.870) | intergenic (+5/+17) | ohsC/acpS | small regulatory RNA OhsC/holo‑[acyl‑carrier‑protein] synthase | |||||
| * | ? | NC_000913 | 3110402 = | 58 (1.030) | 3 (0.060) | 3/250 | NT | 5.4% | noncoding (37/76 nt) | pheV | tRNA‑Phe |
| ? | NC_000913 | = 4362593 | 51 (0.960) | noncoding (34/76 nt) | pheU | tRNA‑Phe | |||||
| * | ? | NC_000913 | 3242999 = | 49 (0.870) | 5 (0.090) | 5/248 | NT | 9.5% | coding (316/1488 nt) | uxaA | D‑altronate dehydratase |
| ? | NC_000913 | 3243024 = | 49 (0.930) | coding (291/1488 nt) | uxaA | D‑altronate dehydratase | |||||
| * | ? | NC_000913 | 3549918 = | 41 (0.730) | 3 (0.060) | 3/246 | NT | 7.4% | coding (153/2085 nt) | malQ | 4‑alpha‑glucanotransferase |
| ? | NC_000913 | 3549940 = | 37 (0.700) | coding (131/2085 nt) | malQ | 4‑alpha‑glucanotransferase | |||||
| * | ? | NC_000913 | = 3700415 | 51 (0.900) | 3 (0.060) | 3/248 | NT | 5.7% | intergenic (+216/‑148) | rdlD/yhjV | antisense regulatory RNA RdlD/putative transporter YhjV |
| ? | NC_000913 | = 3700421 | 51 (0.960) | intergenic (+222/‑142) | rdlD/yhjV | antisense regulatory RNA RdlD/putative transporter YhjV | |||||
| * | ? | NC_000913 | 3721998 = | 57 (1.010) | 3 (0.060) | 3/248 | NT | 5.2% | noncoding (1366/1443 nt) | IS150 | repeat region |
| ? | NC_000913 | 3722033 = | 55 (1.040) | noncoding (1401/1443 nt) | IS150 | repeat region | |||||
| * | ? | NC_000913 | = 3830353 | 51 (0.900) | 3 (0.060) | 3/244 | NT | 5.7% | intergenic (+17/‑104) | xanP/yicH | xanthine:H(+) symporter XanP/AsmA famly protein YicH |
| ? | NC_000913 | = 3830358 | 52 (1.000) | intergenic (+22/‑99) | xanP/yicH | xanthine:H(+) symporter XanP/AsmA famly protein YicH | |||||
| * | ? | NC_000913 | 3883262 = | 55 (0.980) | 3 (0.060) | 3/252 | NT | 5.9% | coding (468/1404 nt) | dnaA | chromosomal replication initiator protein DnaA |
| ? | NC_000913 | 3883286 = | 43 (0.800) | coding (444/1404 nt) | dnaA | chromosomal replication initiator protein DnaA | |||||
| * | ? | NC_000913 | = 3944978 | NA (NA) | 13 (0.240) | 9/252 | NT | 36.2% | noncoding (1275/2904 nt) | rrlC | 23S ribosomal RNA |
| ? | NC_000913 | = 4038811 | 24 (0.430) | noncoding (1293/2905 nt) | rrlA | 23S ribosomal RNA | |||||
| * | ? | NC_000913 | = 3944991 | NA (NA) | 3 (0.060) | 3/252 | NT | 10.8% | noncoding (1288/2904 nt) | rrlC | 23S ribosomal RNA |
| ? | NC_000913 | = 4038798 | 26 (0.460) | noncoding (1280/2905 nt) | rrlA | 23S ribosomal RNA | |||||
| * | ? | NC_000913 | 3995709 = | 49 (0.870) | 3 (0.060) | 3/250 | NT | 6.4% | coding (127/708 nt) | yigA | conserved protein YigA |
| ? | NC_000913 | 3995732 = | 42 (0.790) | coding (150/708 nt) | yigA | conserved protein YigA | |||||
| * | ? | NC_000913 | = 4024573 | 43 (0.760) | 4 (0.070) | 4/254 | NT | 8.7% | coding (249/489 nt) | rfaH | transcription antiterminator RfaH |
| ? | NC_000913 | = 4024606 | 43 (0.790) | coding (216/489 nt) | rfaH | transcription antiterminator RfaH | |||||
| * | ? | NC_000913 | 4542682 = | 47 (0.830) | 11 (0.210) | 11/246 | NT | 19.2% | intergenic (+49/‑433) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | NC_000913 | 4542996 = | 49 (0.930) | intergenic (+363/‑119) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||
| * | ? | NC_000913 | = 4542690 | 48 (0.850) | 6 (0.110) | 6/246 | NT | 11.4% | intergenic (+57/‑425) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | NC_000913 | = 4542986 | 49 (0.930) | intergenic (+353/‑129) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||
| * | ? | NC_000913 | = 4567210 | 43 (0.760) | 3 (0.060) | 3/250 | NT | 6.7% | coding (37/1281 nt) | yjiN | DUF445 domain‑containing protein YjiN |
| ? | NC_000913 | = 4567214 | 43 (0.810) | coding (33/1281 nt) | yjiN | DUF445 domain‑containing protein YjiN | |||||
| * | ? | NC_000913 | = 4604853 | 53 (0.940) | 3 (0.060) | 3/250 | NT | 5.4% | intergenic (+16/+22) | bglJ/fhuF | DNA‑binding transcriptional regulator BglJ/hydroxamate siderophore iron reductase |
| ? | NC_000913 | = 4604861 | 55 (1.030) | intergenic (+24/+14) | bglJ/fhuF | DNA‑binding transcriptional regulator BglJ/hydroxamate siderophore iron reductase | |||||