Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A23 F66 I1 R1
|
33 |
61.7 |
2789148 |
95.4% |
2660847 |
127.5 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
BS168_reference_genome |
2,387,885 |
(A)7→8 |
coding (704/735 nt) |
yphF ← |
putative lipoprotein of unknown function |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | BS168_reference_genome | 2,387,878 | 1 | . | A | 93.1%
| 190.8
/ 6.4
| 58 | coding (711/735 nt) | yphF | putative lipoprotein of unknown function |
| Reads supporting (aligned to +/- strand): ref base . (2/2); new base A (24/30); total (26/32) |
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
TATATGTGTATGACGTTGTCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCT‑AAAAAA‑ACAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGCCAAATCATATCCTGGATTTCAGTCCCGGGTTTAAACGTTTTTTTGCTTTTTTTGAGGCAA > BS168_reference_genome/2387741‑2388010
|
tataTGTGTATGACGTTGTCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCt > 8:336251/1‑138 (MQ=255)
atGTGTATGACGTTGTCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCT‑aaa > 8:140954/1‑138 (MQ=255)
tgtATGACGTTGTCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCT‑aaaaaa‑a < 4:46666/139‑1 (MQ=255)
tATGACGTTGTCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTTTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCT‑aaaaaa‑aa > 7:153512/1‑137 (MQ=255)
tATGACGTTGTCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCT‑aaaaaa‑aa > 1:42158/1‑137 (MQ=255)
tATGACGTTGTCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCT‑aaaaaa‑aa > 6:243215/1‑137 (MQ=255)
tATGACGTTGTCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCT‑aaaaaa‑aa > 6:115357/1‑137 (MQ=255)
tATGACGTTGTCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCT‑aaaaaa‑aa > 2:343030/1‑137 (MQ=255)
tATGACGTTGTCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCT‑aaaaaa‑aa > 4:181075/1‑137 (MQ=255)
tATGACGTTGTCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCT‑AAAAAA‑Ac > 2:96120/1‑138 (MQ=255)
tGACGTTGTCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCTTTTTCT‑aaaaaa‑aacag > 7:29189/1‑135 (MQ=255)
tGACGTTGTCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCTTTTTCT‑aaaaaa‑aacag > 4:336757/1‑135 (MQ=255)
tGACGTTGTCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCT‑aaaaaa‑aacag > 3:197268/1‑135 (MQ=255)
tGACGTTGTCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCT‑aaaaaa‑aacag > 3:206248/1‑135 (MQ=255)
tGACGTTGTCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCT‑aaaaaa‑aacag > 4:207656/1‑135 (MQ=255)
tGACGTTGTCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCT‑aaaaaa‑aacag > 2:194944/1‑135 (MQ=255)
tGACGTTGTCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCT‑aaaaaa‑a < 3:98429/135‑1 (MQ=255)
tGACGTTGTCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCT‑aaaaaa‑a > 4:98429/1‑135 (MQ=255)
tGACGTTGTCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCATATTTGTATGCAAGGGAGAAAGTTTCTTTCCTTTTTCATATCATTTTCT‑aaaaaa‑aacag > 4:12802/1‑135 (MQ=255)
aCGTTGTCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTAAAAAAA‑ACAGGt > 8:118031/1‑139 (MQ=255)
aCGTTGTCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCT‑AAAAAAGACAGGt > 1:258533/1‑139 (MQ=255)
gTTGTCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTAAAAAAA‑ACAGGTTc < 5:278415/139‑1 (MQ=255)
gTTGTCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTAAAAAAA‑ACAGGTTc < 7:204346/139‑1 (MQ=255)
gTTGTCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTAAAAAAA‑ACAGGTTc < 5:283089/139‑1 (MQ=255)
gTTGTCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTAAAAAAA‑ACAGGTTc < 5:115357/139‑1 (MQ=255)
tGTCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCTTTCCTTTTTCATATCATTTTCTAAAAAAA‑ACAGGTTCCt > 5:302759/1‑139 (MQ=255)
tGTCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTAAAAAAA‑ACAGGTTCCt > 2:92882/1‑139 (MQ=255)
tGTCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTAAAAAAA‑ACAGGTTCCt > 3:192277/1‑139 (MQ=255)
gTCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTAGTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTAAAAAAA‑ACAGGTTCCTg > 2:314454/1‑139 (MQ=255)
tCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTAAAAAAA‑ACAGGTTCCTGt > 1:106692/1‑139 (MQ=255)
tCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTAAAAAAA‑ACAGGTTCCTGt < 1:145148/139‑1 (MQ=255)
cTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTAAAAAAA‑ACAGGTTCCTGttt < 8:29359/139‑1 (MQ=255)
tttGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTAAAAAAA‑ACAGGTTCCTGTTTGt > 7:256479/1‑138 (MQ=255)
tttGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTAAAAAAA‑ACAGGTTCCTGTTTGt > 7:190606/1‑138 (MQ=255)
gAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTAAAAAAA‑ACAGGTTCCTGTTTGTCAt < 4:206248/138‑1 (MQ=255)
gAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTAAAAAAA‑ACAGGTTCCTGTTTGTCAt < 1:42484/138‑1 (MQ=255)
gAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTAAAAAAA‑ACAGGTTCCTGTTTGTCAt < 7:76498/138‑1 (MQ=255)
atatGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTAAAAAAA‑ACAGGTTCCTGTTTGTCATTTa > 4:246603/1‑139 (MQ=255)
atatGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTAAAAAAA‑ACAGGTTCCTGTTTGTCATTTa < 4:197268/139‑1 (MQ=255)
tGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTAAAAAAA‑ACAGGTTCCTGTTTGTCATTTAcc < 1:297081/138‑1 (MQ=255)
aCATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTAAAAAAA‑ACAGGTTCCTGTTTGTCATTTACCGt < 3:246603/138‑1 (MQ=255)
cTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTAAAAAAA‑ACAGGTTCCTGTTTGTCATTTACCGTATAtt > 6:179494/1‑139 (MQ=255)
cTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTAAAAAAA‑ACAGGTTCCTGTTTGTCATTTACCGTATAtt > 1:122542/1‑139 (MQ=255)
tttAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTAAAAAAA‑ACAGGTTCCTGTTTGTCATTTACCGTATAttt > 4:302670/1‑139 (MQ=255)
tAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTAAAAAAA‑ACAGGTTCCTGTTTGTCATTTACCGTATAttt < 1:343030/137‑1 (MQ=255)
aaTTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTAAAAAAA‑ACAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGaa < 3:207656/139‑1 (MQ=255)
atactaaaTCTATTAATATAAAAAAACCTTTCTCCCTTTTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTAAAAAAA‑ACAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAAcgcg < 8:256479/131‑1 (MQ=255)
aTCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTAAAAAAA‑ACAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCggg < 1:92882/139‑1 (MQ=255)
cTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTAAAAAAA‑ACAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGa < 7:336251/138‑1 (MQ=255)
aaTCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTAAAAAAA‑ACAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACa < 7:118031/137‑1 (MQ=255)
taAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTAAAAAAA‑ACAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATg > 5:177331/1‑139 (MQ=255)
taAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTAAAAAAA‑ACAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATg > 3:303033/1‑139 (MQ=255)
aaaaaaCCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTAAAAAAA‑ACAGGTTCCTGTTTGTCATTTACCGTATAttt > 8:265742/1‑104 (MQ=255)
aaaaaaCCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTAAAAAAA‑ACAGGTTCCTGTTTGTCATTTACCGTATAttt < 7:265742/104‑1 (MQ=255)
aaaaaaCCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTAAAAAAA‑ACAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGcc < 5:243215/139‑1 (MQ=255)
aaaaaaCCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCT‑AAAAAAGACAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGcc < 2:258533/139‑1 (MQ=255)
ccTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTAAAAAAA‑ACAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGCCAAATCATATCCTg < 1:22065/138‑1 (MQ=255)
cTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTAAAAAAA‑ACAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGCCAAATCATATCCTGGa < 5:179494/139‑1 (MQ=255)
ttGTATGCAAGGGAGTAAGGTTCATTCCTTTTTCATATCATTTTCTAAAAAAA‑ACAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGCCAAATCATATCCTGGAttt < 6:30195/138‑1 (MQ=255)
tGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTAAAAAAA‑ACAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGcc < 6:83733/115‑1 (MQ=255)
tGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTAAAAAAA‑ACAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGcc > 5:83733/1‑115 (MQ=255)
tGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTAAAAAAA‑ACAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGCCaaa > 5:94947/1‑118 (MQ=255)
tGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTAAAAAAA‑ACAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGCCaaa < 6:94947/118‑1 (MQ=255)
tGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTAAAAAAA‑ACAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGCCAAATCATATCCTGGATTTCAGTcc > 6:295531/1‑139 (MQ=255)
tGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTAAAAAAA‑ACAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGCCAAATCATATCCTGGATTTCAGTcc < 8:190606/139‑1 (MQ=255)
agaAAGGTTCATTCCTTTTTCATATCATTTTCTAAAAAAA‑ACAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCTGGGACAAAGGGGGTTTCATGCCAAATCATATCCTGGATTTCAGTCCCGGGttt > 2:280833/1‑138 (MQ=255)
cATTCCTTTTTCATATCATTTTCTAAAAAAA‑ACAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGCCAATTCATATCCTGGATTTCAGTCCCGGGTTTAAACGttttt > 3:37358/1‑139 (MQ=255)
cATTCCTTTTTCATATCATTTTCTAAAAAAA‑ACAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGCCAAATCATATCCTGGATTTCAGTCCCGGGTTTAAACGttttt > 8:297427/1‑139 (MQ=255)
cATTACTTTTTCATATCATTTTCTAAAAAAA‑ACAGGTTCCTGTTTGTCTTTTACCGTATATTTTACAGAAAACGCGGCGACAAAGGGGGTTTCATGCCAAATCATATCATGGATTTCAGTCCCGGGTTTAAACGttttt > 3:175035/1‑139 (MQ=255)
tCCTTTTTCATATCATTTTCTAAAAAAA‑ACAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGCCAAATCATATc > 4:250776/1‑105 (MQ=255)
tCCTTTTTCATATCATTTTCTAAAAAAA‑ACAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGCCAAATCATATc < 3:250776/105‑1 (MQ=255)
tttCATATCATTTTCTAAAAAAA‑ACAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGCCAAATCATATCCTGGATTTCAGTCCCGGGTTTAAACGTTTTTTTGCtttt > 7:207701/1‑139 (MQ=255)
acATTTCCA‑AAAAAA‑ACAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGCCAAATCATATCCTGGATTTCAGTCCCGGGTTTAAACGTTTTTTTGCTTTTTTTGAGGc < 1:96120/138‑1 (MQ=255)
ttttCTAAAAAAA‑ACAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGCCAAATCATATCCTGGATTTCAGTCCCGGGTTTAAACGTTTTTTTGCTTTTTTTGAGGCaa < 6:177331/139‑1 (MQ=255)
ttttCTAAAAAAA‑ACAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGCCAAATCATATCCTGGATTTCAGTCCCGGGTTTAAACGTTTTTTTGCTTTTTTTGAGGCaa < 8:207701/139‑1 (MQ=255)
ttttCTAAAAAAA‑ACAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGCCAAATCATATCCTGGATTTCAGTCCCGGGTTTAAACGTTTTTTTGCTTTTTTTGAGGCaa < 2:42158/139‑1 (MQ=255)
|
TATATGTGTATGACGTTGTCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCT‑AAAAAA‑ACAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGCCAAATCATATCCTGGATTTCAGTCCCGGGTTTAAACGTTTTTTTGCTTTTTTTGAGGCAA > BS168_reference_genome/2387741‑2388010
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
