Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A0 F0 I1 R1
|
29 |
281.6 |
8141248 |
99.5% |
8100541 |
150.0 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
BS168_reference_genome |
2,387,885 |
(A)7→8 |
coding (704/735 nt) |
yphF ← |
putative lipoprotein of unknown function |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | BS168_reference_genome | 2,387,878 | 1 | . | A | 94.3%
| 726.3
/ 35.1
| 211 | coding (711/735 nt) | yphF | putative lipoprotein of unknown function |
| Reads supporting (aligned to +/- strand): ref base . (5/7); new base A (114/85); total (119/92) |
| Fisher's exact test for biased strand distribution p-value = 3.72e-01 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.99e-01 |
Only 100 of 235 total aligned reads displayed.
AACACAGGACACTATATGTGTATGACGTTGTCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCT‑‑A‑A‑A‑AAA‑ACAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGCCAAATCATATCCTGGATTTCAGTCCCGGGTTTAAACGTTTTTTTGCTTTTTTTGAGGCAAGAAGCCAGCTCAGT > BS168_reference_genome/2387729‑2388024
|
aaCACAGGACACTATATGTGTATGACGTTGTCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCt < 1:138901/150‑1 (MQ=255)
aaCACAGGACACTATATGTGTATGACGTTGTCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCt > 2:3054176/1‑150 (MQ=255)
aaCACAGGACACTATATGTGTATGACGTTGTCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCt < 2:3819578/150‑1 (MQ=255)
acaGGACACTATATGTGTATGACGTTGTCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCT‑‑a‑a‑a > 2:3547338/1‑150 (MQ=255)
ggACACTATATGTGTATGACGTTGTCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCT‑‑a‑a‑a‑aaa < 1:4049984/150‑1 (MQ=255)
ggACACTATATGTGTATGACGTTGTCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCT‑‑a‑a‑a‑aaa > 2:2148650/1‑150 (MQ=255)
gACACTATATGTGTATGACGTTGTCCTATTTGAATATGACATCTTTAGAAAATATCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCT‑‑a‑a‑a‑aaa‑a < 2:3988189/150‑1 (MQ=255)
acacTATATGTGTATGACGTTGTCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCAATCCTTTTTCATATCATTTTCT‑‑a‑a‑a‑aaa‑aa > 1:1917322/1‑149 (MQ=255)
acTATATGTGTATGACGTTGTCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGGAAGGGAGAAGGGTTCCTTCCTTTTTCATATCCTTTTCT‑‑g‑a‑a‑aaagaca > 1:690694/1‑146 (MQ=255)
cTATATGTGTATGACGTTGTCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCT‑‑a‑a‑a‑aaa‑aacag < 2:3718519/150‑5 (MQ=255)
cTATATGTGTATGACGTTGTCCTATTTGAATATGACAACTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCT‑‑a‑a‑a‑aaa‑aacag < 2:1012345/150‑5 (MQ=255)
gtatGTGCATGACGTTGTCCTATGTGGATAGGACACCTTTAGAAGATTGCTCACGCCCAACCTACTACTATGAAGCAACCTTTCTCCCTGTTTGTATGCAGGGGAGCAACCTTCATTCCTTTTTCATATCATTTTCT‑‑A‑A‑AGAAA‑GCAGGt < 2:690694/149‑1 (MQ=255)
atatGTGTATGACGTTGTCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTA‑A‑A‑A‑AAA‑ACAGGt < 2:451949/150‑1 (MQ=255)
atatGTGTATGACGTTGTCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTA‑A‑A‑A‑AAA‑ACAGGt > 2:1402465/1‑150 (MQ=255)
gtATGACGTTGTCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTA‑A‑A‑A‑AAA‑ACAGGTTCCTGt > 2:560350/1‑150 (MQ=255)
taagACGTTGTCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTA‑A‑A‑A‑AAA‑ACAGGTTCCTGtt < 1:1904915/147‑1 (MQ=255)
tATGACGTTTTCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTA‑A‑A‑A‑AAA‑ACAGGTTCCTGtt < 1:1516284/150‑1 (MQ=255)
cGTTGTCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTA‑A‑A‑A‑AAA‑ATAGGTTCCTGTTTGTCa < 1:3141259/150‑1 (MQ=255)
gTTGTCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTA‑A‑A‑A‑AAA‑ACAGGTTCCTGTTTGTCAt > 2:3903992/1‑150 (MQ=255)
gTTGTCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCT‑‑A‑A‑A‑AAATACAGGTTCCTGTTTGTCAt > 1:357156/1‑150 (MQ=255)
tGTCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAACCCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTA‑A‑A‑A‑AAA‑ACAGGTTCCTGTTTGTCAttt < 2:2692474/150‑1 (MQ=255)
gTCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTA‑A‑A‑A‑AAA‑ACAGGTTCCTGTTTGTCATTTa < 2:1714434/150‑1 (MQ=255)
gTCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAAACTTTCTCCCTATTTGTATGCAAGGGGGAAAGGTTCATTCCTTTTTCATATCATTTTCTA‑A‑A‑A‑AAA‑ACAGGTTCCTGTTTTGCATTTa > 1:3668827/1‑150 (MQ=255)
tCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTTTGCAAGGGAGAAAGGTTCATTCCTTTTTTATATCATTTTCTA‑A‑A‑A‑AAA‑ACAGGGTCCTGTTTGGCTTTTAc > 1:2251382/1‑150 (MQ=255)
tGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTA‑A‑A‑A‑AAA‑ACAGGTTCCTGTTTGTCATTTACCGTatat > 1:2773788/1‑150 (MQ=255)
gAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTA‑A‑A‑A‑AAA‑ACAGGTTCCTGTTTGTCATTTACCGTATAtt > 2:2362406/1‑150 (MQ=255)
aaTATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTA‑A‑A‑A‑AAA‑ACAGGTTCCTGTTTGTCATTTACCGTATAttt < 2:3207107/150‑1 (MQ=255)
atGCCATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTAAA‑A‑A‑AAA‑ACAGGTTCCTGTTTGTCATTTACCGTATATTTTa < 2:3479017/150‑1 (MQ=255)
tGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTA‑A‑A‑A‑AAA‑ACAGGTTCCTGTTTGTCATTTACCGTATATTTTACa < 1:1011011/150‑1 (MQ=255)
tGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCAATTTCTA‑A‑A‑A‑AAA‑ACAGGTTCCTGTTTGTCATTTACCGTATATTTTACa > 1:1257309/1‑150 (MQ=255)
gACATCTTTAGTAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGGTCATTCCTTTTTCATATCATTTTCTA‑A‑A‑A‑AAA‑ACAGGTTCCTGTTTGTCATTTACCGTATATTTTACAg > 2:1463676/1‑150 (MQ=255)
gACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTA‑A‑A‑A‑AAA‑ACAGGTTCCTGTTTGTCATTTACCGTATATTTTACAg > 2:1347929/1‑150 (MQ=255)
gACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCT‑‑A‑ATA‑AAA‑ACAGGTTCCTGTTTGTCATTTACCGTATATTTTACAg > 1:1111031/1‑150 (MQ=255)
aCATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTA‑A‑A‑A‑AAA‑ACAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGa < 1:2084268/150‑1 (MQ=255)
cATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACTCTTCTTCCTATGTGTATGCAAGGGAGGAAAGATCATTCCTTTTTCTTATTATTTTCT‑‑AGA‑A‑AAA‑ACAGGTTACTGCTTGTCATTTACCGTATCTTTTActgca > 1:2545567/1‑146 (MQ=255)
cATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTA‑A‑A‑A‑AAA‑ACAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGaa > 2:75272/1‑150 (MQ=255)
tCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTA‑A‑A‑A‑AAA‑ACAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGaaaa > 2:95480/1‑150 (MQ=255)
cTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTA‑A‑A‑A‑AAA‑ACAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAAc < 1:2521911/150‑1 (MQ=255)
aGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTA‑A‑A‑A‑AAA‑ACAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCgg < 2:2107656/150‑1 (MQ=255)
aGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTA‑A‑A‑A‑AAA‑ACAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCgg < 1:32372/150‑1 (MQ=255)
gAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTA‑A‑A‑A‑AAA‑ACAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCggg > 2:904712/1‑150 (MQ=255)
aaaaTTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTA‑A‑A‑A‑AAA‑ACAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCgggg > 2:3583077/1‑150 (MQ=255)
aaaTTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTA‑A‑A‑A‑AAA‑ACAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAAcgtttaaa < 2:1111031/150‑7 (MQ=255)
aaaTTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTA‑A‑A‑A‑AAA‑ACAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGa < 2:2773788/150‑1 (MQ=255)
aaTTTCCCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTA‑A‑A‑A‑AAA‑ACAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGAc < 1:973273/150‑1 (MQ=255)
aTTTCTCATCCTCTATCTATTTATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTA‑A‑A‑A‑AAA‑ACAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACa < 1:750604/150‑1 (MQ=255)
ctcATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAGGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTA‑A‑A‑A‑AAA‑ACAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAgg < 1:1667994/150‑1 (MQ=255)
aTCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTA‑A‑A‑A‑AAA‑ACAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAggggg < 2:223132/150‑1 (MQ=255)
tCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTA‑A‑A‑A‑AAA‑ACAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGt < 1:2818484/150‑1 (MQ=255)
cTCAATCTATTAATCTAAAAAATCCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTA‑A‑A‑A‑AAA‑ACAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGttt < 1:2989797/150‑1 (MQ=255)
cTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTA‑A‑A‑A‑AAA‑ACAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGttt < 2:3448866/150‑1 (MQ=255)
cAATCTATTAATATAAAAAAACTTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTA‑A‑A‑A‑AAA‑ACAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCa > 1:2185230/1‑150 (MQ=255)
cTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTA‑A‑A‑A‑AAA‑ACAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGcc > 2:3792550/1‑150 (MQ=255)
ttAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTA‑A‑A‑A‑AAA‑ACAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGCCaaa < 1:1092069/150‑1 (MQ=255)
ttAATATAAAAAAAACTTTCTCCCTATTTGTAAGCAAGGGAGAAAGGTTCATTCCTTTCTCATATCATTTTCTA‑A‑A‑A‑AAA‑ACAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGCCaaa < 1:3013283/150‑1 (MQ=255)
tAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTA‑A‑A‑A‑AAA‑ACAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGCCAAAt > 2:2330125/1‑150 (MQ=255)
atatAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTA‑A‑A‑A‑AAA‑ACAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGCCAAATCa > 1:1602278/1‑150 (MQ=255)
aaaaaaaCCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTA‑A‑A‑A‑AAA‑ACAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGCCAAATCATATc > 2:323341/1‑150 (MQ=255)
aaaCCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTA‑A‑A‑A‑AAA‑ACAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGCCAAATCATATCCTgg > 2:3322765/1‑150 (MQ=255)
aaCCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTA‑A‑A‑A‑AAA‑ACAGGTTCCTGTTTGTCATTTATCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGCCAAATCATATCCTGGa > 1:1697849/1‑150 (MQ=255)
aaCCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTA‑A‑A‑A‑AAA‑ACAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGCCAAATCATATCCTGGa < 1:90448/150‑1 (MQ=255)
aaCCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTA‑A‑A‑A‑AAA‑ACAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGCCAAATCATATCCTGGa > 2:2014489/1‑150 (MQ=255)
ttCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTA‑A‑A‑A‑AAA‑ACAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGCCAAATCATATCCTGGATTTCa > 1:3441051/1‑150 (MQ=255)
ttCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTA‑A‑A‑A‑AAA‑ACAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGCCAAATCATATCCTGGATTTCa > 1:3637453/1‑150 (MQ=255)
ctcCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTA‑A‑A‑A‑AAA‑ACAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGCCAAATCATATCCTGGATTTCAGt > 2:758010/1‑150 (MQ=255)
ctcCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTA‑A‑A‑A‑AAA‑ACAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGCCAAATCATATCCTGGATTTCAGt < 1:2428917/150‑1 (MQ=255)
ctcCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTA‑A‑A‑A‑AAA‑ACAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGCCAAATCATATCCTGGATTTCAGt < 2:2919190/150‑1 (MQ=255)
cccTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTATCTA‑A‑A‑A‑AAA‑ACAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGCCAAATCATATCCTGGATTTCAGTcc > 1:1621258/1‑150 (MQ=255)
tATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTA‑A‑A‑A‑AAA‑ACAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGCCAAATCATATCCTGGATTTCAGTCCCgg > 2:308481/1‑150 (MQ=255)
tATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTA‑A‑A‑A‑AAA‑ACAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGCCAAATCATATCCTGGATTTCAGTCCCgg > 2:1561613/1‑150 (MQ=255)
ttGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTA‑A‑A‑A‑AAA‑ACAGGTTCCTGTTTGTCATTTACCCTATATTTTACAGAAAACGCGGGGACAAAGGGGGGTTCATGCCAAATCTAATCCTGGATTTCAGTCCCGGGtt > 2:3805955/1‑150 (MQ=255)
gTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTA‑A‑A‑A‑AAA‑ACAGGTTCCTGTTTGTCATTTACCGTGTATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGCCAAATCATATCCTGGATTTCAGTCCCGGGTTTa > 2:3385835/1‑150 (MQ=255)
tGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTA‑A‑A‑A‑AAA‑ACAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGCCAAATCATATCCTGGATTTCAGTCCCGGGTTTAAAc > 1:831996/1‑150 (MQ=255)
tGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTA‑A‑A‑A‑AAA‑ACAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGCCAAATCATATCCTGGATTTCAGTCCCGGGTTTAAAc > 1:578241/1‑150 (MQ=255)
tGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTA‑A‑A‑A‑AAA‑ACAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGCCAAATCATATCCTGGATTTCAGTCCCGGGTTTAAAc < 1:4034466/150‑1 (MQ=255)
cAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTA‑A‑A‑A‑AAA‑ACAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGCCAAATCATATCCTGGATTTCAGTCCCGGGTTTAAACGt < 1:3276682/150‑1 (MQ=255)
aaGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTA‑A‑A‑A‑AAA‑ACAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCAGGCCAAATCATATCCTGGATTTCAGTCCCGGGTTTAAACggt > 2:1968150/1‑148 (MQ=255)
gagaAAGGTTCATTCCTTTTTCATATCATTTTCTA‑A‑A‑A‑AAA‑ACAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGCCAAATCATATTCTGGATTTCAGTCCCGGGTTTAAACGtttttt < 1:2418553/150‑1 (MQ=255)
agaAAGGTTCATTCCTTTTTCATATCATTTTCTA‑A‑A‑A‑AAA‑ACAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGCCAAATCATATCCTGGATTTCAGTCCCGGGTTTAAACGttttttt > 2:2546300/1‑150 (MQ=255)
gaAAGGTTCATTCCTTTTTCATATCATTTTCTA‑A‑A‑A‑AAA‑ACAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGCCAAATCATATCCTGGATTTCAGTCCCGGGTTTAAACGttttt < 1:3305933/147‑1 (MQ=255)
aaaGGTTCATTCCTTTTTCATATCATTTTCTA‑A‑A‑A‑AAA‑ACAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGCCAAATCATATCCTGGATTTCAGTCCCGGGTTTAAACGTTTTTTTGc < 1:3492751/150‑1 (MQ=255)
aaGGTTCATTCCTTTTTCATATCATTTTCTA‑A‑A‑A‑AAA‑ACAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGCCAAATCATATCCTGGATTTCAGTCCCGGGTTTAAACGTTTTTTTGCt < 1:1097741/150‑1 (MQ=255)
aGGTTCATTCCTTTTTCATATCATTTTCTA‑A‑A‑A‑AAA‑ACAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGCCAAATCATATCCTGGATTTCAGTCCCGGGTTTAAACGTTTTTTTGCtt < 1:968368/150‑1 (MQ=255)
ggTTCATTCCTTTTTCATATCATTTTCTA‑A‑A‑A‑AAA‑ACAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGCCAAATCATATCCTGGATTTCAGTCCCGGGTTTAAACGTTTTTTTGCttt < 2:1912515/150‑1 (MQ=255)
gTTCATTCCTTTTTCATATCATTTTCTA‑A‑A‑A‑AAA‑ACAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGCCAAATCATATCCTGGATTTCAGTCCCGGGTTTAAACGTTTTTTTGCtttt > 2:1211636/1‑150 (MQ=255)
tccATTCCTTTTTCATATCATTTTCTA‑A‑A‑A‑AAA‑ACAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGCCAAATCATATCCTGGATTTCAGTCCCGGGTTTAAACGTTTTTTTGCttttt < 2:3637453/148‑1 (MQ=255)
aTTCCTTTTTCATATCATTTTCTA‑A‑A‑A‑AAA‑ACAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGCCAAATCATATCCTGGATTTCAGTCCCGGGTTTAAACGTTTTTTTGCTTTTTTTg < 2:2385082/150‑1 (MQ=255)
tCCTTTTTCATATCATTTTCTA‑A‑A‑A‑AAA‑ACAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGCCAAATCATATCCTGGATTTCAGTCCCGGGTTTAAACGTTTTTTTGCTTTTTTTGAg < 1:2571495/150‑1 (MQ=255)
tCCTTTTTCATATCATTTTCTA‑A‑A‑A‑AAA‑ACAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGCCAAATCATATCCTGGATTTCAGTCCCGGGTTTAAACGTTTTTTTGCTTTTTTTGAg > 2:508631/1‑150 (MQ=255)
ccTTTTTCATATCATTTTCTA‑A‑A‑A‑AAA‑ACAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGCCAAATCATATCCTGGATTTCAGTCCCGGGTTTAAACGTTTTTTTGCTTTTTTTGAgg > 2:2640499/1‑150 (MQ=255)
ccTTTTTCATATCATTTTCTA‑A‑A‑A‑AAA‑ACAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGCCAAATCATATCCTGGATTTCAGTCCCGGGTTTAAACGTTTTTTTGCTTTTTTTGAgg > 2:327542/1‑150 (MQ=255)
cTTTTTCATATCATTTTCTA‑A‑A‑A‑AAA‑ACAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGCCAAATCATATCCTGGATTTCAGTCCCGGGTTTAAACGTTTTTTTGCTTTTTTTGAGGc < 1:2754239/150‑1 (MQ=255)
cATATCATTTTCTA‑A‑A‑A‑AAA‑ACAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGCCAAATCATATCCTGGATTTCAGTCCCGGGTTTAAACGTTTTTTTGCTTTTTTTGAGGCaagaag > 1:1434166/1‑150 (MQ=255)
atCATTTTCTA‑A‑A‑A‑AAA‑ACAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGCCAAATCATATCCTGGATTTCAGTCCCGGGGTAAAACGTTTTTTGGCTTTTTTTGGGGCAAGAAGCCa > 2:2705729/1‑150 (MQ=255)
tCATTTTCTA‑A‑A‑A‑AAA‑ACAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGCCAAATCATATCCTGGATTTCAGTCCCGGGTTTAAACGTTTTTTTGCTTTTTTTGGGGCAAGGAGCCAg > 2:317553/1‑150 (MQ=255)
tCATTTTCTA‑A‑A‑A‑AAA‑ACAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGCCAAATCATATCCTGGATTTCAGTCCCGGGTTTAAACGTTTTTTTGCTTTTTTTGAGGCAAGAAGCCAg < 1:1861888/150‑1 (MQ=255)
tCATTTTCTA‑A‑A‑A‑AAA‑ACAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGCCAAATCATATCCTGGATTTCAGTCCCGGGTTTAAACGTTTTTTTGCTTTTTTTGAGGCAAGAAGCCAg > 1:3805223/1‑150 (MQ=255)
cATTTTCTA‑A‑A‑A‑AAA‑ACAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGCCAAATCATATCCTGGATTTCAGTCCCGGGTTTAAACGTATTTTTGCTTTATTTGAGGCAAGAAGCCAGc > 2:1070228/1‑150 (MQ=255)
aTTTTCTA‑A‑A‑A‑AAA‑ACAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGCCAAATCATATCCTGGATTTCAGTCCCGGGTTTAAACGTTTTTTTGCTTTTTTTGAGGCAAGAAGCCAGCt < 1:90513/150‑1 (MQ=255)
aTTTTCTA‑A‑A‑A‑AAA‑ACAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGCCAAATCATATCCTGGATTTCAGTCCCGGGTTTAAACGTTTTTTTGCTTTTTTTGAGGCAAGAAGCCAGCt > 2:624683/1‑150 (MQ=255)
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AACACAGGACACTATATGTGTATGACGTTGTCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCT‑‑A‑A‑A‑AAA‑ACAGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGCCAAATCATATCCTGGATTTCAGTCCCGGGTTTAAACGTTTTTTTGCTTTTTTTGAGGCAAGAAGCCAGCTCAGT > BS168_reference_genome/2387729‑2388024
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| Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
