Sample Resequencing Stats
Note: The mutation counts shown below represent unfiltered mutation sets.
| ALE, Flask, Isolate |
Predicted Mutations |
Mean Coverage |
Total Reads |
Percent Mapped |
Mapped Reads |
Average Read Length |
|
A24 F66 I1 R1
|
37 |
65.5 |
2715618 |
95.2% |
2585268 |
125.9 |
Breseq alignment
BRESEQ :: Evidence
|
| evidence |
seq id |
position |
mutation |
annotation |
gene |
description |
| RA |
BS168_reference_genome |
2,387,885 |
(A)7→8 |
coding (704/735 nt) |
yphF ← |
putative lipoprotein of unknown function |
|
| |
seq id |
position |
ref |
new |
freq |
score (cons/poly) |
reads |
annotation |
genes |
product |
| * | BS168_reference_genome | 2,387,878 | 1 | . | A | 90.4%
| 169.3
/ 9.9
| 52 | coding (711/735 nt) | yphF | putative lipoprotein of unknown function |
| Reads supporting (aligned to +/- strand): ref base . (5/0); new base A (20/27); total (25/27) |
| Fisher's exact test for biased strand distribution p-value = 2.04e-02 |
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 |
TATATGTGTATGACGTTGTCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCT‑AAA‑AAAAC‑AGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGCCAAATCATATCCTGGATTTCAGTCCCGGGTTTAAACGTTTTTTTGCTTTTTTTGAGGCAA > BS168_reference_genome/2387741‑2388010
|
tataTGTGTATGACGTTGTCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCt > 3:148716/1‑138 (MQ=255)
gtATGACGTTGTCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCT‑aaa‑aaaaa > 8:313749/1‑138 (MQ=255)
tATGACGTTGTCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCT‑aaa‑aaaaa > 1:180818/1‑137 (MQ=255)
tATGACGTTGTCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCT‑aaa‑aaaaa > 4:207255/1‑137 (MQ=255)
tATGACGTTGTCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCT‑aaa‑aaaaa > 6:332960/1‑137 (MQ=255)
tATGACGTTGTCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCT‑aaa‑aaaaa > 8:290076/1‑137 (MQ=255)
tATGACGTTGTCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCT‑aaa‑aaaaa > 6:292067/1‑137 (MQ=255)
tATGACGTTGTCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCT‑aaa‑aaaaa > 2:17241/1‑137 (MQ=255)
tATGACGTTGTCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCT‑aaa‑aaaaa > 8:218003/1‑137 (MQ=255)
tATGACGTTGTCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCT‑aaa‑aaaaa < 2:219000/138‑2 (MQ=255)
tATGACGTTGTCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCT‑aaa‑aaaaa < 2:242024/138‑2 (MQ=255)
tATGACGTTGTCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCACCCTATTTGATTGCAAGGAATAATGGTTCATACCTTTTAAATAAGATTTAAA‑AAA‑AAAAc > 8:70537/1‑138 (MQ=255)
tGACGTTGTCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCT‑aaa‑aaaaacag > 3:147978/1‑135 (MQ=255)
tGACGTTGTCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCT‑aaa‑aaaaacag > 8:164340/1‑135 (MQ=255)
tGACGTTGTCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCT‑aaa‑aaaaacag > 2:324097/1‑135 (MQ=255)
tGACGTTGTCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCT‑aaa‑aaaaacag > 4:124822/1‑135 (MQ=255)
tGACGTTGTCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCT‑aaa‑aaaaacag > 1:91957/1‑135 (MQ=255)
tGACGTTGTCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCT‑aaa‑aaaaacag > 6:11507/1‑135 (MQ=255)
tGACGTTGTCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCT‑aaa‑aaaaacag > 8:99387/1‑135 (MQ=255)
tGACGTTGTCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCT‑AAA‑AAAAC‑Agg > 5:284313/1‑139 (MQ=255)
aCGTTGTCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTAAAA‑AAAAC‑AGGt > 2:68755/1‑139 (MQ=255)
gTTGTCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTAAAA‑AAAAC‑AGGTTc < 7:313749/139‑1 (MQ=255)
tGTCCTATTTGAATATGACGTCTTTAGAAAATTTCTCATCCTCAGTCTATTTATATAAAAAAACCTTTCTCCCGAGTTGTATGCAAGGGAGAAAGGTTCATTCGTTTTTCTTATCATTGTCT‑AAA‑AAATCGAGGTTCCt > 8:160403/1‑139 (MQ=255)
gTCCTATTTGAATATGCCATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCT‑AAATAAAAC‑AGGTTCCTg > 1:285070/1‑139 (MQ=255)
tCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTAAAA‑AAAAC‑AGGTTCCTGt > 5:37570/1‑139 (MQ=255)
tCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTACTAAAA‑AAAAC‑AGGTTCCTGt < 8:247839/139‑1 (MQ=255)
atatGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCATATTTGTATGAAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTAAAA‑AAAAC‑AGGTACCTGTTTGTCTTTTa > 6:5138/1‑139 (MQ=255)
tGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTAAAA‑AAAAC‑AGGTTCCTGTTTGTCATTTAcc < 2:180818/138‑1 (MQ=255)
tGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTAAAA‑AAAAC‑AGGGTCCTGTTTGTCATTTAcc < 7:137049/138‑1 (MQ=255)
aCATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTAAAA‑AAAAC‑AGGTTCCTGTTTGTCATTTACCGt < 1:80610/138‑1 (MQ=255)
cTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTAAAA‑AAAAC‑AGGTTCCTGttt < 4:149339/122‑1 (MQ=255)
cTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTAAAA‑AAAAC‑AGGTTCCTGttt > 3:149339/1‑122 (MQ=255)
ttCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCT‑AAA‑AAAAC‑AGGTTCCTGATTGTCATTTAACTTATATTTTAAAGAAAAcg > 3:41591/1‑139 (MQ=255)
tcATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTAAAA‑AAAAC‑AGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAAcgcg < 2:91957/139‑1 (MQ=255)
aTCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTAAAA‑AAAAC‑AGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAAcgc < 5:11507/136‑1 (MQ=255)
aTCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTAAAA‑AAAAC‑AGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAAcgc < 5:332960/136‑1 (MQ=255)
tCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTAAAA‑AAAAC‑AGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAgg > 4:182734/1‑139 (MQ=255)
tAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTAAAA‑AAAAC‑AGGTTCCTGTGTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGtt > 8:315791/1‑139 (MQ=255)
aaaaaaaCCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTAAAA‑AAAAC‑AGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGc > 4:285855/1‑139 (MQ=255)
aaaaaaCCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTAAAA‑AAAAC‑AGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGcc < 7:290076/139‑1 (MQ=255)
aaaaaaCCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTAAAA‑AAAAC‑AGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGcc < 6:226734/139‑1 (MQ=255)
aaaaaaCCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTAAAA‑AAAAC‑AGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGc > 8:149326/1‑138 (MQ=255)
aCCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTAAAA‑AAAAC‑AGGTTCCTGTTTGTGATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGCCAAATc < 4:147978/139‑1 (MQ=255)
ccTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTAAAA‑AAAAC‑AGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGCCAAATCa < 1:68755/139‑1 (MQ=255)
ccTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTAAAA‑AAAAC‑AGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGCCAAATCa > 6:340455/1‑139 (MQ=255)
ttCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTAAAA‑AAAAC‑AGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGAc > 5:57077/1‑113 (MQ=255)
ttCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTAAAA‑AAAAC‑AGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGAc < 6:57077/113‑1 (MQ=255)
aTTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTAAAA‑AAAAC‑AGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGcc < 5:229076/122‑1 (MQ=255)
aTTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTAAAA‑AAAAC‑AGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGcc > 6:229076/1‑122 (MQ=255)
tttGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTAAAA‑AAAAC‑AGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGGTTCATGCCAAATCATATCCTGGAttt < 1:324097/139‑1 (MQ=255)
tATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTAAAA‑AAAAC‑AGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGCCAAATc < 1:197108/122‑1 (MQ=255)
tATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTAAAA‑AAAAC‑AGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGCCAAATc > 2:197108/1‑122 (MQ=255)
tGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTAAAA‑AAAAC‑AGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGCCAAATCATATCCTGGATTTCAGTcc < 3:285855/139‑1 (MQ=255)
cAAGGGAGAAAGTTTCATTCCTTTTTCATATCATTTTCTAAAA‑AAAAC‑AGGTTACTGTTTGTCATTTACCGAATATTTTACAGAAAACTCGGTGACAAAGGGGTTTTCATGCGAAATCGTATCCTGGATATCAGTCCCg > 6:232905/1‑139 (MQ=255)
cAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTAAAA‑AAAAC‑AGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCgg > 2:35891/1‑92 (MQ=255)
cAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCTAAAA‑AAAAC‑AGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCgg < 1:35891/92‑1 (MQ=255)
tgggAGAAAGGTTCATTCCTATATCATATCATTTTCTAAAA‑AAAAC‑AGGTTCCTGTTTGTCATTTAGCGAATATTTTACAGAATACGCGGGGACAAAGGCGGTTTCATGCCAAATCATATCCTGGATTTCTGTccctgt > 4:185297/2‑136 (MQ=255)
agaAAGGTTCATTCCTTTTTCATATCATTTTCTAAAA‑AAAAC‑AGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGcc < 2:84101/107‑1 (MQ=255)
agaAAGGTTCATTCCTTTTTCATATCATTTTCTAAAA‑AAAAC‑AGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGcc > 1:84101/1‑107 (MQ=255)
aaaGGTTCATTCCTTTTTCATATCATTTTCTAAAA‑AAAAC‑AGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAGACGCGGGGACAAAGGGGGTTTCTTGCCAAATCATATCCTGGATTTCAGTCCCGGGTTTaaa > 2:110841/1‑139 (MQ=255)
aaaGGTTCATTCCTTTTTCATATCATTTTCTAAAA‑AAAAC‑AGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAGACGCGGGGACAAAGGGGGTTGCATGCCAAATCATATCCTGGATTTCAGTCCGGGGTTTaaa > 6:118477/1‑139 (MQ=255)
tCCTTTTTCATATCATTTTCTAAAA‑AAAAC‑AGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGCCAAATCATATCCTGGATTTCAGTCCCGGGTTTAAACGttttttt > 3:87584/1‑138 (MQ=255)
ttttCATATCATTTTCTAAAA‑AAAAC‑AGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGCCAAATCATATCCTGGATTTCAGTCCCGGGTTTAAACGTTTTTTTGCttt > 3:276910/1‑139 (MQ=255)
tatCATTTTCTAAAA‑AAAAC‑AGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGCCAAATCATATCCTGGATTTCAGTCCCGGGTTTAAACGTTTTTTTGCTTTTTTTGa < 2:330396/139‑1 (MQ=255)
aTTTTCTAAAA‑AAAAC‑AGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGCCAAATCATATCCTGGATTTCAGTCCCGGGTTTAAACGTTTTTTTGCTTTTTTTGAGGc < 5:292067/138‑1 (MQ=255)
ttttCTAAAA‑AAAAC‑AGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGCCAAATCATATCCTGGATTTCAGTCCCGGGTTTAAACGTTTTTTTGCTTTTTTTGAGGCaa < 7:149326/139‑1 (MQ=255)
ttttCTAAAA‑AAAAC‑AGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGCCAAATCATATCCTGGATTTCAGTCCCGGGTTTAAACGTTTTTTTGCTTTTTTTGAGGCaa < 7:164340/139‑1 (MQ=255)
ttttCTAAAA‑AAAAC‑AGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGCCAAATCATATCCTGGATTTCAGTCCCGGGTTTAAACGTTTTTTTGCTTTTTTTGAGGCaa < 4:148716/139‑1 (MQ=255)
ttttCTAAAA‑AAAAC‑AGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGCCAAATCATATCCTGGATTTCAGTCCCGGGTTTAAACGTTTTTTTGCTTTTTTTGAGGCaa < 5:340455/139‑1 (MQ=255)
ttttCTAAAA‑AAAAC‑AGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGCCAAATCATATCCTGGATTTCAGTCCCGGGTTTAAACGTTTTTTTGCTTTTTTTGAGGCaa < 5:282456/139‑1 (MQ=255)
|
TATATGTGTATGACGTTGTCCTATTTGAATATGACATCTTTAGAAAATTTCTCATCCTCAATCTATTAATATAAAAAAACCTTTCTCCCTATTTGTATGCAAGGGAGAAAGGTTCATTCCTTTTTCATATCATTTTCT‑AAA‑AAAAC‑AGGTTCCTGTTTGTCATTTACCGTATATTTTACAGAAAACGCGGGGACAAAGGGGGTTTCATGCCAAATCATATCCTGGATTTCAGTCCCGGGTTTAAACGTTTTTTTGCTTTTTTTGAGGCAA > BS168_reference_genome/2387741‑2388010
|
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
GATK/CNVnator alignment
N/A
